Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0014203

Physical Location & Seq

Genomic Coordinates Forward (+)

9238438 .. 9240821

Gene Structure 2384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g13590.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGAAGTTGCTTTTCAACCTTCCCCTGCAATTATTTGTCACAGGCAATCGAGGTTTCCGTCAAAGTTATCTTTGTTGCCGCTGTTCGCTTATAAGGGACTTTCTATTGGGTGCTCTCCTCGCAGATGGCCCATTTCGAGAAATTTAAGCCATTCGGCTCATCATAGTGTTTTATGCATTCAAAGGAAACATGGTAGCATATCGTGGTGTGACTTTGATGCAAAAGAGGAGTTTGGAAGACCGCATTGTAATATTAGATTGCATGACCAAAATCGGTTGTCCAGGTATACAGTTGTACAATCTGCTGAAGCTGGAACCTGTGATGCTGGCTATCCATTACCAGAAGTAAGTATGGTCTCAAGAGTTAGGGGAATTGGCTTTTGTGCCATTACTGCTTTCAATGCCATTTATCTCTTTGTGCTGATGCTGATAGTCCATCCTCTTGTGCTGTTACTGGATCGATACAAAAGAAAAGCTCATATTTTTATTGCCAAAATTTGGGCCACTGCTACGATTACACCATTTGTTAGGATCAAGTATGAGGGACTGGAGAATTTGCCTCCGCCTGATGCTCCTGCTGTGTATGTTTCCAACCACCAGAGCTTTTTAGACATCTATGTTCTTTTCACAATTGGGAGACCCTTTAAGTTTATCAGCAAGACCAGCATATTTCTCTATCCCATTATTGGGTGGGCCATGTTTCTGATGGGTGTAATTCCTTTAAAGCGCATGGACAGAAAAAGCCAATTGGAATGCTTTAAGAGTTGCGTAGATCTTATCAAGAAGGGGGCCTCTGTCTTTTTCTTCCCTGAGGGAACACGCAGCAAAGATGGAAAATTAGGTGCTTTCAAGAGAGGGGCCTTCAGTCTTGCAGCGAAAACCAAGGTACCAGTAGTTCCAATTACCGTTATAGGAACCGGAAAGATCATGCCTCCGGGAAGGGAGACTATCTTGAATACTGGAGCTGTTAAAGTTGTTATTCATAAACCTATAGAAGGAAATGATACAGAAGTACTGTGTAGGGAAAGCAGAAACATAATCGCTAGTGCACTTGATCGTCAAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006644 GO:0006650 GO:0006655 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0019637 GO:0022414 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046471 GO:0046474 GO:0046486 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

Acyltransferase

Protein Analysis

356

Amino Acids

39.7

Weight (kDa)

9.79

Isoelectric Point (pI)

42.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30580
fragaria_vesca	FvH4_1g00880 FvH4_1g00880
malus_domestica	MD02G1007100.v1.1 MD15G1144400.v1.1
prunus_persica	Prupe.7G263300_v2.0.a1 Prupe.7G263300_v2.0.a1
pyrus_communis	pycom02g00600 pycom15g13590
rosa_chinensis	RchiOBHm_Chr2g0085591
rosa_multiflora	Rmu_sc0006059.1_g000018 Rmu_sc0016087.1_g000004
rosa_roxburghii	Rroxscaffold_2G00155240
rosa_rugosa	Rorug01G0022900
rosa_samantha	Rh2AG010700 Rh2DG013100
rosa_wichuraiana	Rw2G000950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	93
Acc65I	GGTACC	1 cut(s)	886
AccB1I	GGYRCC	1 cut(s)	886
AccB7I	CCANNNNNTGG	1 cut(s)	498
AccI	GTMKAC	1 cut(s)	287
AciI	CCGC	3 cut(s)	80, 242, 563
AclWI	GGATC	2 cut(s)	465, 539
AcsI	RAATTY	3 cut(s)	142, 495, 553
AcuI	CTGAAG	2 cut(s)	327, 847
AfaI	GTAC	3 cut(s)	297, 888, 1014
AfiI	CCNNNNNNNGG	4 cut(s)	498, 686, 687, 995
AgsI	TTSAA	5 cut(s)	17, 182, 400, 850, 955
AjnI	CCWGG	1 cut(s)	281
AluBI	AGCT	4 cut(s)	311, 476, 603, 965
AluI	AGCT	4 cut(s)	311, 476, 603, 965
Alw21I	GWGCWC	2 cut(s)	116, 1051
Alw26I	GTCTC	3 cut(s)	361, 631, 938
Alw44I	GTGCAC	1 cut(s)	1047
AlwI	GGATC	2 cut(s)	465, 539
AoxI	GGCC	5 cut(s)	128, 501, 693, 789, 858
ApaLI	GTGCAC	1 cut(s)	1047
ApeKI	GCWGC	2 cut(s)	822, 872
ApoI	RAATTY	3 cut(s)	142, 495, 553
Asp718I	GGTACC	1 cut(s)	886
AspLEI	GCGC	1 cut(s)	729
AspS9I	GGNCC	5 cut(s)	129, 501, 693, 789, 858
AsuC2I	CCSGG	1 cut(s)	936
AxyI	CCTNAGG	1 cut(s)	810
BaeGI	GKGCMC	1 cut(s)	1051
BaeI	ACNNNNGTAYC	4 cut(s)	870, 903, 996, 1029
BanI	GGYRCC	1 cut(s)	886
BbsI	GAAGAC	1 cut(s)	244
Bbv12I	GWGCWC	2 cut(s)	116, 1051
BbvI	GCAGC	2 cut(s)	834, 884
BccI	CCATC	4 cut(s)	120, 444, 700, 824
BciT130I	CCWGG	1 cut(s)	283
BcnI	CCSGG	1 cut(s)	936
BcoDI	GTCTC	3 cut(s)	361, 631, 938
BfaI	CTAG	1 cut(s)	1044
BfmI	CTRYAG	1 cut(s)	990
BglII	AGATCT	1 cut(s)	772
BisI	GCNGC	3 cut(s)	80, 823, 873
BlsI	GCNGC	3 cut(s)	81, 824, 874
BmcAI	AGTACT	1 cut(s)	1014
Bme1390I	CCNGG	2 cut(s)	283, 936
BmgT120I	GGNCC	5 cut(s)	129, 501, 693, 789, 858
BmiI	GGNNCC	5 cut(s)	316, 790, 859, 888, 916
BmrFI	CCNGG	2 cut(s)	283, 936
BmsI	GCATC	4 cut(s)	208, 313, 414, 559
BpiI	GAAGAC	1 cut(s)	244
BpmI	CTGGAG	2 cut(s)	569, 981
BpuEI	CTTGAG	1 cut(s)	343
BpuMI	CCSGG	1 cut(s)	936
Bsa29I	ATCGAT	1 cut(s)	460
BsaI	GGTCTC	2 cut(s)	361, 631
BsaJI	CCNNGG	1 cut(s)	882
BsaWI	WCCGGW	1 cut(s)	917
Bsc4I	CCNNNNNNNGG	4 cut(s)	498, 686, 687, 995
Bse1I	ACTGG	4 cut(s)	459, 552, 890, 964
Bse21I	CCTNAGG	1 cut(s)	810
BseBI	CCWGG	1 cut(s)	283
BseCI	ATCGAT	1 cut(s)	460
BseDI	CCNNGG	1 cut(s)	882
BseGI	GGATG	1 cut(s)	436
BseLI	CCNNNNNNNGG	4 cut(s)	498, 686, 687, 995
BseMII	CTCAG	1 cut(s)	801
BseNI	ACTGG	4 cut(s)	459, 552, 890, 964
BseRI	GAGGAG	2 cut(s)	108, 242
BseSI	GKGCMC	1 cut(s)	1051
BseXI	GCAGC	2 cut(s)	834, 884
BshFI	GGCC	5 cut(s)	130, 503, 695, 791, 860
BshNI	GGYRCC	1 cut(s)	886
BshVI	ATCGAT	1 cut(s)	460
BsiHKAI	GWGCWC	2 cut(s)	116, 1051
BsiSI	CCGG	2 cut(s)	918, 935
BslFI	GGGAC	2 cut(s)	111, 558
BslI	CCNNNNNNNGG	4 cut(s)	498, 686, 687, 995
BsmAI	GTCTC	3 cut(s)	361, 631, 938
BsmFI	GGGAC	2 cut(s)	111, 558
BsmI	GAATGC	2 cut(s)	177, 758
BsnI	GGCC	5 cut(s)	130, 503, 695, 791, 860
Bso31I	GGTCTC	2 cut(s)	361, 631
Bsp1286I	GDGCHC	2 cut(s)	116, 1051
Bsp1407I	TGTACA	1 cut(s)	295
Bsp143I	GATC	5 cut(s)	457, 531, 772, 924, 1054
BspACI	CCGC	3 cut(s)	80, 242, 563
BspANI	GGCC	5 cut(s)	130, 503, 695, 791, 860
BspCNI	CTCAG	1 cut(s)	802
BspDI	ATCGAT	1 cut(s)	460
BspLI	GGNNCC	5 cut(s)	316, 790, 859, 888, 916
BspPI	GGATC	2 cut(s)	465, 539
BspT107I	GGYRCC	1 cut(s)	886
BspTNI	GGTCTC	2 cut(s)	361, 631
BsrGI	TGTACA	1 cut(s)	295
BsrI	ACTGG	4 cut(s)	459, 552, 890, 964
BssECI	CCNNGG	1 cut(s)	882
BssMI	GATC	5 cut(s)	457, 531, 772, 924, 1054
BssNAI	GTATAC	1 cut(s)	288
BssT1I	CCWWGG	1 cut(s)	882
Bst1107I	GTATAC	1 cut(s)	288
Bst2UI	CCWGG	1 cut(s)	283
Bst4CI	ACNGT	3 cut(s)	292, 907, 1017
BstAUI	TGTACA	1 cut(s)	295
BstC8I	GCNNGC	1 cut(s)	328
BstDEI	CTNAG	1 cut(s)	810
BstENI	CCTNNNNNAGG	1 cut(s)	993
BstF5I	GGATG	1 cut(s)	436
BstHHI	GCGC	1 cut(s)	729
BstKTI	GATC	5 cut(s)	460, 534, 775, 927, 1057
BstMAI	GTCTC	3 cut(s)	361, 631, 938
BstMBI	GATC	5 cut(s)	457, 531, 772, 924, 1054
BstMWI	GCNNNNNNNGC	4 cut(s)	120, 392, 401, 663
BstNI	CCWGG	1 cut(s)	283
BstSCI	CCNGG	2 cut(s)	281, 934
BstSFI	CTRYAG	1 cut(s)	990
BstSLI	GKGCMC	1 cut(s)	1051
BstV1I	GCAGC	2 cut(s)	834, 884
BstV2I	GAAGAC	1 cut(s)	244
BstX2I	RGATCY	1 cut(s)	772
BstYI	RGATCY	1 cut(s)	772
BstZ17I	GTATAC	1 cut(s)	288
Bsu15I	ATCGAT	1 cut(s)	460
Bsu36I	CCTNAGG	1 cut(s)	810
BsuRI	GGCC	5 cut(s)	130, 503, 695, 791, 860
BsuTUI	ATCGAT	1 cut(s)	460
BtsCI	GGATG	1 cut(s)	436
BtsI	GCAGTG	1 cut(s)	504
BtsIMutI	CAGTG	1 cut(s)	504
Cac8I	GCNNGC	1 cut(s)	328
CfoI	GCGC	1 cut(s)	729
Cfr13I	GGNCC	5 cut(s)	129, 501, 693, 789, 858
ClaI	ATCGAT	1 cut(s)	460
Csp6I	GTAC	3 cut(s)	296, 887, 1013
CviAII	CATG	5 cut(s)	191, 263, 697, 730, 928
CviQI	GTAC	3 cut(s)	296, 887, 1013
DdeI	CTNAG	1 cut(s)	810
DpnI	GATC	5 cut(s)	459, 533, 774, 926, 1056
DpnII	GATC	5 cut(s)	457, 531, 772, 924, 1054
DraI	TTTAAA	1 cut(s)	723
EciI	GGCGGA	1 cut(s)	552
Eco130I	CCWWGG	1 cut(s)	882
Eco31I	GGTCTC	2 cut(s)	361, 631
Eco57I	CTGAAG	2 cut(s)	327, 847
Eco81I	CCTNAGG	1 cut(s)	810
EcoNI	CCTNNNNNAGG	1 cut(s)	993
EcoO109I	RGGNCCY	2 cut(s)	789, 858
EcoRII	CCWGG	1 cut(s)	281
EcoT14I	CCWWGG	1 cut(s)	882
EcoT22I	ATGCAT	1 cut(s)	179
ErhI	CCWWGG	1 cut(s)	882
FaeI	CATG	5 cut(s)	194, 266, 700, 733, 931
FaqI	GGGAC	2 cut(s)	111, 558
FatI	CATG	5 cut(s)	190, 262, 696, 729, 927
FblI	GTMKAC	1 cut(s)	287
Fnu4HI	GCNGC	3 cut(s)	80, 823, 873
FokI	GGATG	1 cut(s)	423
Fsp4HI	GCNGC	3 cut(s)	80, 823, 873
FspBI	CTAG	1 cut(s)	1044
GlaI	GCGC	1 cut(s)	728
GluI	GCNGC	3 cut(s)	80, 823, 873
GsuI	CTGGAG	2 cut(s)	569, 981
HaeIII	GGCC	5 cut(s)	130, 503, 695, 791, 860
HapII	CCGG	2 cut(s)	918, 935
HhaI	GCGC	1 cut(s)	729
Hin1II	CATG	5 cut(s)	194, 266, 700, 733, 931
Hin6I	GCGC	1 cut(s)	727
HinP1I	GCGC	1 cut(s)	727
HpaII	CCGG	2 cut(s)	918, 935
Hpy166II	GTNNAC	2 cut(s)	288, 1049
Hpy188I	TCNGA	1 cut(s)	705
Hpy188III	TCNNGA	5 cut(s)	138, 360, 781, 850, 952
Hpy8I	GTNNAC	2 cut(s)	288, 1049
HpyAV	CCTTC	5 cut(s)	30, 778, 871, 933, 989
HpyCH4III	ACNGT	3 cut(s)	292, 907, 1017
HpyCH4V	TGCA	6 cut(s)	29, 177, 221, 262, 872, 1049
HpyF10VI	GCNNNNNNNGC	4 cut(s)	120, 392, 401, 663
HpyF3I	CTNAG	1 cut(s)	810
Hsp92II	CATG	5 cut(s)	194, 266, 700, 733, 931
HspAI	GCGC	1 cut(s)	727
KpnI	GGTACC	1 cut(s)	890
Kzo9I	GATC	5 cut(s)	457, 531, 772, 924, 1054
LmnI	GCTCC	2 cut(s)	577, 962
Lsp1109I	GCAGC	2 cut(s)	834, 884
LweI	GCATC	4 cut(s)	208, 313, 414, 559
MaeI	CTAG	1 cut(s)	1044
MaeIII	GTNAC	3 cut(s)	38, 209, 450
MalI	GATC	5 cut(s)	459, 533, 774, 926, 1056
MboI	GATC	5 cut(s)	457, 531, 772, 924, 1054
MboII	GAAGA	2 cut(s)	249, 796
MfeI	CAATTG	2 cut(s)	630, 746
MflI	RGATCY	1 cut(s)	772
MhlI	GDGCHC	2 cut(s)	116, 1051
MmeI	TCCRAC	1 cut(s)	615
Mph1103I	ATGCAT	1 cut(s)	179
MseI	TTAA	5 cut(s)	146, 645, 722, 759, 969
MslI	CAYNNNNRTG	1 cut(s)	165
MspA1I	CMGCKG	1 cut(s)	82
MspI	CCGG	2 cut(s)	918, 935
MspR9I	CCNGG	2 cut(s)	283, 936
MunI	CAATTG	2 cut(s)	630, 746
Mva1269I	GAATGC	2 cut(s)	177, 758
MvaI	CCWGG	1 cut(s)	283
MwoI	GCNNNNNNNGC	4 cut(s)	120, 392, 401, 663
NciI	CCSGG	1 cut(s)	936
NdeII	GATC	5 cut(s)	457, 531, 772, 924, 1054
NlaIII	CATG	5 cut(s)	194, 266, 700, 733, 931
NlaIV	GGNNCC	5 cut(s)	316, 790, 859, 888, 916
NmuCI	GTSAC	2 cut(s)	38, 209
NsiI	ATGCAT	1 cut(s)	179
PcsI	WCGNNNNNNNCGW	1 cut(s)	56
PctI	GAATGC	2 cut(s)	177, 758
PflMI	CCANNNNNTGG	1 cut(s)	498
PfoI	TCCNGGA	1 cut(s)	934
PkrI	GCNGC	3 cut(s)	81, 824, 874
PsiI	TTATAA	1 cut(s)	93
Psp6I	CCWGG	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	281
PspN4I	GGNNCC	5 cut(s)	316, 790, 859, 888, 916
PspPI	GGNCC	5 cut(s)	129, 501, 693, 789, 858
PsrI	GAACNNNNNNTAC	2 cut(s)	879, 911
PsuI	RGATCY	1 cut(s)	772
RsaI	GTAC	3 cut(s)	297, 888, 1014
RsaNI	GTAC	3 cut(s)	296, 887, 1013
RseI	CAYNNNNRTG	1 cut(s)	165
SaqAI	TTAA	5 cut(s)	146, 645, 722, 759, 969
SatI	GCNGC	3 cut(s)	80, 823, 873
Sau3AI	GATC	5 cut(s)	457, 531, 772, 924, 1054
Sau96I	GGNCC	5 cut(s)	129, 501, 693, 789, 858
ScaI	AGTACT	1 cut(s)	1014
ScrFI	CCNGG	2 cut(s)	283, 936
SduI	GDGCHC	2 cut(s)	116, 1051
SfaNI	GCATC	4 cut(s)	208, 313, 414, 559
SfcI	CTRYAG	1 cut(s)	990
SmiMI	CAYNNNNRTG	1 cut(s)	165
SmlI	CTYRAG	1 cut(s)	358
SmoI	CTYRAG	1 cut(s)	358
SsiI	CCGC	3 cut(s)	80, 242, 563
SspI	AATATT	1 cut(s)	253
SspMI	CTAG	1 cut(s)	1044
StyD4I	CCNGG	2 cut(s)	281, 934
StyI	CCWWGG	1 cut(s)	882
TaaI	ACNGT	3 cut(s)	292, 907, 1017
TaqI	TCGA	3 cut(s)	50, 137, 460
TatI	WGTACW	2 cut(s)	295, 1012
TauI	GCSGC	1 cut(s)	82
Tru1I	TTAA	5 cut(s)	146, 645, 722, 759, 969
Tru9I	TTAA	5 cut(s)	146, 645, 722, 759, 969
TscAI	CASTG	1 cut(s)	511
TseFI	GTSAC	2 cut(s)	38, 209
TseI	GCWGC	2 cut(s)	822, 872
Tsp45I	GTSAC	2 cut(s)	38, 209
TspDTI	ATGAA	1 cut(s)	971
TspGWI	ACGGA	1 cut(s)	48
TspRI	CASTG	1 cut(s)	511
Van91I	CCANNNNNTGG	1 cut(s)	498
VneI	GTGCAC	1 cut(s)	1047
XagI	CCTNNNNNAGG	1 cut(s)	993
XapI	RAATTY	3 cut(s)	142, 495, 553
XcmI	CCANNNNNNNNNTGG	1 cut(s)	703
XmiI	GTMKAC	1 cut(s)	287
XspI	CTAG	1 cut(s)	1044
ZrmI	AGTACT	1 cut(s)	1014
Zsp2I	ATGCAT	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.