Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0014203

Physical Location & Seq

Genomic Coordinates Forward (+)

91611893 .. 91615447

Gene Structure 3555 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00155240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGAAGTCGCTTCTCACCCTTCGCATTCTATACTCTCTGCTTGTCATAGCGTTTTATGCATTCCAAGGAAGCCAGTTGGGATATCATGGTGTGACGTTGATGCCAAAAAGGAGTTTGTCAGACCTTATAATGATGTCAGATTGCATAACCAGCGTAAATCGTCCAGGCTTACAGTTGTACATTGTGGACTTGTTGAAACTGGAACCCCTGATGAAGCCTTGCCAGAAGCAAATATGGTCTCAAAAGTTAGGGGGCTGTGCTTTTATGCCATTACTGCCTTTAATGCCATTTATCTCTTTGTACTGATGGTAGTAGCCCATCCTTTTGTTCTGTTGTTGGATCGATATAGAAGACGAGCTCAATTTTTTATTGCCAAAATTTGGGCCACTTTTGCTGTTACTCCGTTTCTCAATATCAAGTTTGAGGGACTGGAGAATTTGCCTCGTCCAGATGTTCCTGCTGTATATGTTTCTAACCACCAGAGCTTTTTAGACATATATGTTCTTCTCACTATTGGGAGACCCTATAAGTTTATTAGCAAGACTAGCATATTCCTCATTCCCATTATTGGGTGGGCCATGTTTCTACTAGGCGTGATTCCTTTAAAGCGCATGGACAGCAAAAGCCAATTGGAATGTCTTAAACGTTGCATATATCTTCTCAAGAAGGGGTCCTCTGTCTTTTTCTTCCCTGAGGGAACACGCAGTAAAGATGGAAAATTAGGGGATTTCAAGAAAGGTGCCTTCAGTCTTGCAGCAAAGACGAATGTGCCAGTGGTGCCTATTACTCTTATTGGAACTGGGAAAATCATGCCTGTGGGAAAGGAGGGCATCTTGAACACTGGACCTGTTAAAGTTGTTATACATAAACCTATAGAAGGAACTGATACAGAAACACTGTGCAGAGAAAGTAGAAACATAATTGCAGAAGCACTCAATTGTCAAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006644 GO:0006650 GO:0006655 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0019637 GO:0022414 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046471 GO:0046474 GO:0046486 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

Acyltransferase

Protein Analysis

316

Amino Acids

35.25

Weight (kDa)

9.48

Isoelectric Point (pI)

36.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyltransferase	PF01553	139 - 264	5.2e-33	Acyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30580
fragaria_vesca	FvH4_1g00880 FvH4_1g00880
malus_domestica	MD02G1007100.v1.1 MD15G1144400.v1.1
prunus_persica	Prupe.7G263300_v2.0.a1 Prupe.7G263300_v2.0.a1
pyrus_communis	pycom02g00600 pycom15g13590
rosa_chinensis	RchiOBHm_Chr2g0085591
rosa_multiflora	Rmu_sc0006059.1_g000018 Rmu_sc0016087.1_g000004
rosa_roxburghii	Rroxscaffold_2G00155240
rosa_rugosa	Rorug01G0022900
rosa_samantha	Rh2AG010700 Rh2DG013100
rosa_wichuraiana	Rw2G000950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	129
AccB1I	GGYRCC	2 cut(s)	740, 778
AccB7I	CCANNNNNTGG	1 cut(s)	381
AclI	AACGTT	1 cut(s)	646
AclWI	GGATC	1 cut(s)	348
AcsI	RAATTY	2 cut(s)	378, 436
AcuI	CTGAAG	1 cut(s)	730
AfaI	GTAC	2 cut(s)	180, 303
AfiI	CCNNNNNNNGG	4 cut(s)	381, 569, 570, 878
AgsI	TTSAA	3 cut(s)	197, 733, 838
AjnI	CCWGG	1 cut(s)	164
AluBI	AGCT	2 cut(s)	359, 486
AluI	AGCT	2 cut(s)	359, 486
Alw21I	GWGCWC	1 cut(s)	361
Alw26I	GTCTC	2 cut(s)	244, 514
AlwI	GGATC	1 cut(s)	348
AoxI	GGCC	2 cut(s)	384, 576
ApeKI	GCWGC	1 cut(s)	755
ApoI	RAATTY	2 cut(s)	378, 436
AspLEI	GCGC	1 cut(s)	612
AspS9I	GGNCC	4 cut(s)	384, 576, 672, 845
AsuHPI	GGTGA	1 cut(s)	8
AvaII	GGWCC	2 cut(s)	672, 845
AxyI	CCTNAGG	1 cut(s)	693
BanI	GGYRCC	2 cut(s)	740, 778
BanII	GRGCYC	1 cut(s)	361
BbsI	GAAGAC	1 cut(s)	358
Bbv12I	GWGCWC	1 cut(s)	361
BbvI	GCAGC	1 cut(s)	767
BccI	CCATC	3 cut(s)	301, 327, 707
BciT130I	CCWGG	1 cut(s)	166
BcoDI	GTCTC	2 cut(s)	244, 514
BfaI	CTAG	2 cut(s)	546, 590
BfmI	CTRYAG	1 cut(s)	873
BisI	GCNGC	1 cut(s)	756
BlsI	GCNGC	1 cut(s)	757
Bme1390I	CCNGG	1 cut(s)	166
Bme18I	GGWCC	2 cut(s)	672, 845
BmgT120I	GGNCC	4 cut(s)	384, 576, 672, 845
BmiI	GGNNCC	4 cut(s)	205, 673, 742, 780
BmrFI	CCNGG	1 cut(s)	166
BmrI	ACTGGG	1 cut(s)	810
BmsI	GCATC	2 cut(s)	91, 840
BmuI	ACTGGG	1 cut(s)	810
BpiI	GAAGAC	1 cut(s)	358
BpmI	CTGGAG	1 cut(s)	452
BpuEI	CTTGAG	1 cut(s)	647
Bsa29I	ATCGAT	1 cut(s)	343
BsaI	GGTCTC	2 cut(s)	244, 514
BsaJI	CCNNGG	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	4 cut(s)	381, 569, 570, 878
Bse1I	ACTGG	6 cut(s)	74, 205, 435, 773, 805, 847
Bse21I	CCTNAGG	1 cut(s)	693
BseBI	CCWGG	1 cut(s)	166
BseCI	ATCGAT	1 cut(s)	343
BseDI	CCNNGG	1 cut(s)	65
BseGI	GGATG	1 cut(s)	319
BseLI	CCNNNNNNNGG	4 cut(s)	381, 569, 570, 878
BseMII	CTCAG	1 cut(s)	684
BseNI	ACTGG	6 cut(s)	74, 205, 435, 773, 805, 847
BseXI	GCAGC	1 cut(s)	767
BsgI	GTGCAG	1 cut(s)	922
BshFI	GGCC	2 cut(s)	386, 578
BshNI	GGYRCC	2 cut(s)	740, 778
BshVI	ATCGAT	1 cut(s)	343
BsiHKAI	GWGCWC	1 cut(s)	361
BslFI	GGGAC	1 cut(s)	441
BslI	CCNNNNNNNGG	4 cut(s)	381, 569, 570, 878
BsmAI	GTCTC	2 cut(s)	244, 514
BsmFI	GGGAC	1 cut(s)	441
BsmI	GAATGC	2 cut(s)	25, 60
BsnI	GGCC	2 cut(s)	386, 578
Bso31I	GGTCTC	2 cut(s)	244, 514
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp1407I	TGTACA	1 cut(s)	178
Bsp143I	GATC	1 cut(s)	340
BspANI	GGCC	2 cut(s)	386, 578
BspCNI	CTCAG	1 cut(s)	685
BspDI	ATCGAT	1 cut(s)	343
BspLI	GGNNCC	4 cut(s)	205, 673, 742, 780
BspPI	GGATC	1 cut(s)	348
BspT107I	GGYRCC	2 cut(s)	740, 778
BspTNI	GGTCTC	2 cut(s)	244, 514
BsrGI	TGTACA	1 cut(s)	178
BsrI	ACTGG	6 cut(s)	74, 205, 435, 773, 805, 847
BssECI	CCNNGG	1 cut(s)	65
BssMI	GATC	1 cut(s)	340
BssT1I	CCWWGG	1 cut(s)	65
Bst2UI	CCWGG	1 cut(s)	166
Bst4CI	ACNGT	2 cut(s)	175, 900
BstAUI	TGTACA	1 cut(s)	178
BstDEI	CTNAG	1 cut(s)	693
BstENI	CCTNNNNNAGG	1 cut(s)	876
BstF5I	GGATG	1 cut(s)	319
BstHHI	GCGC	1 cut(s)	612
BstKTI	GATC	1 cut(s)	343
BstMAI	GTCTC	2 cut(s)	244, 514
BstMBI	GATC	1 cut(s)	340
BstMWI	GCNNNNNNNGC	8 cut(s)	57, 151, 275, 284, 392, 546, 618, 778
BstNI	CCWGG	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	164
BstSFI	CTRYAG	1 cut(s)	873
BstV1I	GCAGC	1 cut(s)	767
BstV2I	GAAGAC	1 cut(s)	358
Bsu15I	ATCGAT	1 cut(s)	343
Bsu36I	CCTNAGG	1 cut(s)	693
BsuRI	GGCC	2 cut(s)	386, 578
BsuTUI	ATCGAT	1 cut(s)	343
BtsCI	GGATG	1 cut(s)	319
BtsIMutI	CAGTG	3 cut(s)	780, 840, 896
CfoI	GCGC	1 cut(s)	612
Cfr13I	GGNCC	4 cut(s)	384, 576, 672, 845
ClaI	ATCGAT	1 cut(s)	343
Csp6I	GTAC	2 cut(s)	179, 302
CviAII	CATG	4 cut(s)	87, 580, 613, 811
CviQI	GTAC	2 cut(s)	179, 302
DdeI	CTNAG	1 cut(s)	693
DpnI	GATC	1 cut(s)	342
DpnII	GATC	1 cut(s)	340
DraI	TTTAAA	1 cut(s)	606
Ecl136II	GAGCTC	1 cut(s)	359
Eco130I	CCWWGG	1 cut(s)	65
Eco24I	GRGCYC	1 cut(s)	361
Eco31I	GGTCTC	2 cut(s)	244, 514
Eco32I	GATATC	1 cut(s)	84
Eco47I	GGWCC	2 cut(s)	672, 845
Eco53kI	GAGCTC	1 cut(s)	359
Eco57I	CTGAAG	1 cut(s)	730
Eco81I	CCTNAGG	1 cut(s)	693
EcoICRI	GAGCTC	1 cut(s)	359
EcoNI	CCTNNNNNAGG	1 cut(s)	876
EcoO109I	RGGNCCY	1 cut(s)	672
EcoRII	CCWGG	1 cut(s)	164
EcoRV	GATATC	1 cut(s)	84
EcoT14I	CCWWGG	1 cut(s)	65
EcoT22I	ATGCAT	1 cut(s)	62
EcoT38I	GRGCYC	1 cut(s)	361
ErhI	CCWWGG	1 cut(s)	65
FaeI	CATG	4 cut(s)	90, 583, 616, 814
FaqI	GGGAC	1 cut(s)	441
FatI	CATG	4 cut(s)	86, 579, 612, 810
Fnu4HI	GCNGC	1 cut(s)	756
FokI	GGATG	1 cut(s)	306
FriOI	GRGCYC	1 cut(s)	361
Fsp4HI	GCNGC	1 cut(s)	756
FspBI	CTAG	2 cut(s)	546, 590
GlaI	GCGC	1 cut(s)	611
GluI	GCNGC	1 cut(s)	756
GsuI	CTGGAG	1 cut(s)	452
HaeIII	GGCC	2 cut(s)	386, 578
HhaI	GCGC	1 cut(s)	612
Hin1II	CATG	4 cut(s)	90, 583, 616, 814
Hin6I	GCGC	1 cut(s)	610
HinP1I	GCGC	1 cut(s)	610
HinfI	GANTC	1 cut(s)	598
HphI	GGTGA	1 cut(s)	8
Hpy166II	GTNNAC	1 cut(s)	188
Hpy188I	TCNGA	2 cut(s)	122, 140
Hpy188III	TCNNGA	4 cut(s)	449, 664, 733, 835
Hpy8I	GTNNAC	1 cut(s)	188
HpyAV	CCTTC	4 cut(s)	30, 661, 754, 872
HpyCH4III	ACNGT	2 cut(s)	175, 900
HpyCH4IV	ACGT	2 cut(s)	96, 646
HpyCH4V	TGCA	6 cut(s)	60, 145, 651, 755, 903, 926
HpyF10VI	GCNNNNNNNGC	8 cut(s)	57, 151, 275, 284, 392, 546, 618, 778
HpyF3I	CTNAG	1 cut(s)	693
HpySE526I	ACGT	2 cut(s)	96, 646
Hsp92II	CATG	4 cut(s)	90, 583, 616, 814
HspAI	GCGC	1 cut(s)	610
Kzo9I	GATC	1 cut(s)	340
Lsp1109I	GCAGC	1 cut(s)	767
LweI	GCATC	2 cut(s)	91, 840
MaeI	CTAG	2 cut(s)	546, 590
MaeII	ACGT	2 cut(s)	96, 646
MaeIII	GTNAC	2 cut(s)	92, 397
MalI	GATC	1 cut(s)	342
MboI	GATC	1 cut(s)	340
MboII	GAAGA	4 cut(s)	363, 497, 650, 679
MfeI	CAATTG	2 cut(s)	629, 937
MhlI	GDGCHC	1 cut(s)	361
MluCI	AATT	7 cut(s)	362, 378, 436, 629, 719, 921, 937
MmeI	TCCRAC	1 cut(s)	318
MnlI	CCTC	6 cut(s)	418, 453, 566, 685, 688, 820
Mph1103I	ATGCAT	1 cut(s)	62
MseI	TTAA	4 cut(s)	282, 605, 642, 852
MslI	CAYNNNNRTG	1 cut(s)	815
MspR9I	CCNGG	1 cut(s)	166
MunI	CAATTG	2 cut(s)	629, 937
Mva1269I	GAATGC	2 cut(s)	25, 60
MvaI	CCWGG	1 cut(s)	166
MwoI	GCNNNNNNNGC	8 cut(s)	57, 151, 275, 284, 392, 546, 618, 778
NdeII	GATC	1 cut(s)	340
NlaIII	CATG	4 cut(s)	90, 583, 616, 814
NlaIV	GGNNCC	4 cut(s)	205, 673, 742, 780
NmuCI	GTSAC	1 cut(s)	92
NsiI	ATGCAT	1 cut(s)	62
PctI	GAATGC	2 cut(s)	25, 60
PfeI	GAWTC	1 cut(s)	598
PflMI	CCANNNNNTGG	1 cut(s)	381
PkrI	GCNGC	1 cut(s)	757
PpuMI	RGGWCCY	1 cut(s)	672
PsiI	TTATAA	1 cut(s)	129
Psp124BI	GAGCTC	1 cut(s)	361
Psp1406I	AACGTT	1 cut(s)	646
Psp5II	RGGWCCY	1 cut(s)	672
Psp6I	CCWGG	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	164
PspN4I	GGNNCC	4 cut(s)	205, 673, 742, 780
PspPI	GGNCC	4 cut(s)	384, 576, 672, 845
PspPPI	RGGWCCY	1 cut(s)	672
RsaI	GTAC	2 cut(s)	180, 303
RsaNI	GTAC	2 cut(s)	179, 302
RseI	CAYNNNNRTG	1 cut(s)	815
SacI	GAGCTC	1 cut(s)	361
SaqAI	TTAA	4 cut(s)	282, 605, 642, 852
SatI	GCNGC	1 cut(s)	756
Sau3AI	GATC	1 cut(s)	340
Sau96I	GGNCC	4 cut(s)	384, 576, 672, 845
ScrFI	CCNGG	1 cut(s)	166
SduI	GDGCHC	1 cut(s)	361
SetI	ASST	8 cut(s)	99, 127, 361, 488, 649, 742, 850, 874
SfaNI	GCATC	2 cut(s)	91, 840
SfcI	CTRYAG	1 cut(s)	873
SinI	GGWCC	2 cut(s)	672, 845
SmiMI	CAYNNNNRTG	1 cut(s)	815
SmlI	CTYRAG	1 cut(s)	662
SmoI	CTYRAG	1 cut(s)	662
Sse9I	AATT	7 cut(s)	362, 378, 436, 629, 719, 921, 937
SspMI	CTAG	2 cut(s)	546, 590
SstI	GAGCTC	1 cut(s)	361
StyD4I	CCNGG	1 cut(s)	164
StyI	CCWWGG	1 cut(s)	65
TaaI	ACNGT	2 cut(s)	175, 900
TaiI	ACGT	2 cut(s)	99, 649
TaqI	TCGA	1 cut(s)	343
TasI	AATT	7 cut(s)	362, 378, 436, 629, 719, 921, 937
TatI	WGTACW	2 cut(s)	178, 301
TfiI	GAWTC	1 cut(s)	598
Tru1I	TTAA	4 cut(s)	282, 605, 642, 852
Tru9I	TTAA	4 cut(s)	282, 605, 642, 852
TscAI	CASTG	3 cut(s)	780, 847, 903
TseFI	GTSAC	1 cut(s)	92
TseI	GCWGC	1 cut(s)	755
Tsp45I	GTSAC	1 cut(s)	92
TspDTI	ATGAA	1 cut(s)	228
TspGWI	ACGGA	1 cut(s)	393
TspRI	CASTG	3 cut(s)	780, 847, 903
Van91I	CCANNNNNTGG	1 cut(s)	381
VpaK11BI	GGWCC	2 cut(s)	672, 845
XagI	CCTNNNNNAGG	1 cut(s)	876
XapI	RAATTY	2 cut(s)	378, 436
XspI	CTAG	2 cut(s)	546, 590
Zsp2I	ATGCAT	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.