Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016087.1

Orthogroup ID

OG0014203

Physical Location & Seq

Genomic Coordinates Forward (+)

11342 .. 14536

Gene Structure 3195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016087.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

atggaagtcgcttctcacccttctcattctatactctgttacaagcaatccaggttgccatcaacgtcgtctttgttgccgctgttcactcagaagggactaactattgggtgctctccgcgcagacgtcccattttgggaaagcttagtagttctgcttgtcatagcgttttttgcattccaaggaagccggttgggatatcatggtgtgacgttgatgccaaagaggagtttgtcagaccttataatgatgtcagattgcataaccagtataaatcgtccaggcacacagttgtacattgtggacttgttgaaactggaacccctaatgaagccttaccagaagtaaatatggtctcaaaagttagggggctgtgcttttatgccattactgcctttaatgccatttatctctttgcactgatggtagtagcccatccttttgtcctgttgttggatcgatatagaagacgagctcaattttttattgccaaagtttgggccacttttgctgttactccgtttctcaatatcaagtttgagggactggagaatttgcctcctccagatgttcctgctgtatatgtttctaaccaccagagctttttagacatatatgttcttctcactattgggagaccctataagtttattagcaagactagcatattcctcattcccattattgggtgggccatgtttctactaggcgtgattcctttaaagcgcatggacagcaaaagccaattggaatgtcttaaacgttgcatatatcttctcaagaaggggtcctctgtctttttcttccctgagggaacacgcagtaaagatggaaaattaggggatttcaagaaaggtgccttcagtcttgcagcaaagacgaatgttccagtggtgcctattactcttataggaactgggaaaatcatgcctgtgggaaaggagggtatcttgaacactggacctactcgttcctttgctgtgaatggaagtaacataatccaaaagagaaagcaaataaaatttgcagcagagtttaaatctgtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006644 GO:0006650 GO:0006655 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0019637 GO:0022414 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046471 GO:0046474 GO:0046486 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

Acyltransferase

Protein Analysis

349

Amino Acids

38.95

Weight (kDa)

9.88

Isoelectric Point (pI)

44.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30580
fragaria_vesca	FvH4_1g00880 FvH4_1g00880
malus_domestica	MD02G1007100.v1.1 MD15G1144400.v1.1
prunus_persica	Prupe.7G263300_v2.0.a1 Prupe.7G263300_v2.0.a1
pyrus_communis	pycom02g00600 pycom15g13590
rosa_chinensis	RchiOBHm_Chr2g0085591
rosa_multiflora	Rmu_sc0006059.1_g000018 Rmu_sc0016087.1_g000004
rosa_roxburghii	Rroxscaffold_2G00155240
rosa_rugosa	Rorug01G0022900
rosa_samantha	Rh2AG010700 Rh2DG013100
rosa_wichuraiana	Rw2G000950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	246
AatII	GACGTC	1 cut(s)	130
AccB1I	GGYRCC	2 cut(s)	857, 895
AccB7I	CCANNNNNTGG	1 cut(s)	498
AccII	CGCG	1 cut(s)	121
AciI	CCGC	2 cut(s)	80, 119
AclI	AACGTT	1 cut(s)	763
AclWI	GGATC	1 cut(s)	465
AcsI	RAATTY	2 cut(s)	553, 1022
AcuI	CTGAAG	1 cut(s)	847
AcyI	GRCGYC	1 cut(s)	127
AfaI	GTAC	1 cut(s)	297
AfiI	CCNNNNNNNGG	5 cut(s)	137, 454, 498, 686, 687
AgsI	TTSAA	3 cut(s)	314, 850, 955
AjnI	CCWGG	2 cut(s)	50, 281
AluBI	AGCT	3 cut(s)	145, 476, 603
AluI	AGCT	3 cut(s)	145, 476, 603
Alw21I	GWGCWC	2 cut(s)	116, 478
Alw26I	GTCTC	2 cut(s)	361, 631
AlwI	GGATC	1 cut(s)	465
AoxI	GGCC	2 cut(s)	501, 693
ApeKI	GCWGC	2 cut(s)	872, 1028
ApoI	RAATTY	2 cut(s)	553, 1022
AspLEI	GCGC	2 cut(s)	123, 729
AspS9I	GGNCC	4 cut(s)	501, 693, 789, 962
AsuHPI	GGTGA	1 cut(s)	8
AvaII	GGWCC	2 cut(s)	789, 962
AxyI	CCTNAGG	1 cut(s)	810
BanI	GGYRCC	2 cut(s)	857, 895
BanII	GRGCYC	1 cut(s)	478
BbsI	GAAGAC	1 cut(s)	475
Bbv12I	GWGCWC	2 cut(s)	116, 478
BbvI	GCAGC	2 cut(s)	884, 1040
BccI	CCATC	4 cut(s)	67, 418, 444, 824
BciT130I	CCWGG	2 cut(s)	52, 283
BcoDI	GTCTC	2 cut(s)	361, 631
BfaI	CTAG	2 cut(s)	663, 707
BisI	GCNGC	3 cut(s)	80, 873, 1029
BlsI	GCNGC	3 cut(s)	81, 874, 1030
Bme1390I	CCNGG	2 cut(s)	52, 283
Bme18I	GGWCC	2 cut(s)	789, 962
BmgT120I	GGNCC	4 cut(s)	501, 693, 789, 962
BmiI	GGNNCC	4 cut(s)	322, 790, 859, 897
BmrFI	CCNGG	2 cut(s)	52, 283
BmrI	ACTGGG	1 cut(s)	927
BmsI	GCATC	1 cut(s)	208
BmuI	ACTGGG	1 cut(s)	927
BpiI	GAAGAC	1 cut(s)	475
BpmI	CTGGAG	2 cut(s)	549, 569
BpuEI	CTTGAG	1 cut(s)	764
Bsa29I	ATCGAT	1 cut(s)	460
BsaHI	GRCGYC	1 cut(s)	127
BsaI	GGTCTC	2 cut(s)	361, 631
BsaJI	CCNNGG	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	5 cut(s)	137, 454, 498, 686, 687
Bse118I	RCCGGY	1 cut(s)	190
Bse1I	ACTGG	6 cut(s)	268, 322, 552, 890, 922, 964
Bse21I	CCTNAGG	1 cut(s)	810
BseBI	CCWGG	2 cut(s)	52, 283
BseCI	ATCGAT	1 cut(s)	460
BseDI	CCNNGG	1 cut(s)	182
BseGI	GGATG	1 cut(s)	436
BseLI	CCNNNNNNNGG	5 cut(s)	137, 454, 498, 686, 687
BseMII	CTCAG	2 cut(s)	104, 801
BseNI	ACTGG	6 cut(s)	268, 322, 552, 890, 922, 964
BseRI	GAGGAG	2 cut(s)	242, 552
BseXI	GCAGC	2 cut(s)	884, 1040
Bsh1236I	CGCG	1 cut(s)	121
BshFI	GGCC	2 cut(s)	503, 695
BshNI	GGYRCC	2 cut(s)	857, 895
BshVI	ATCGAT	1 cut(s)	460
BsiHKAI	GWGCWC	2 cut(s)	116, 478
BsiSI	CCGG	1 cut(s)	191
BslFI	GGGAC	3 cut(s)	111, 114, 558
BslI	CCNNNNNNNGG	5 cut(s)	137, 454, 498, 686, 687
BsmAI	GTCTC	2 cut(s)	361, 631
BsmFI	GGGAC	3 cut(s)	111, 114, 558
BsmI	GAATGC	1 cut(s)	177
BsnI	GGCC	2 cut(s)	503, 695
Bso31I	GGTCTC	2 cut(s)	361, 631
Bsp1286I	GDGCHC	2 cut(s)	116, 478
Bsp1407I	TGTACA	1 cut(s)	295
Bsp143I	GATC	1 cut(s)	457
BspACI	CCGC	2 cut(s)	80, 119
BspANI	GGCC	2 cut(s)	503, 695
BspCNI	CTCAG	2 cut(s)	103, 802
BspDI	ATCGAT	1 cut(s)	460
BspFNI	CGCG	1 cut(s)	121
BspLI	GGNNCC	4 cut(s)	322, 790, 859, 897
BspPI	GGATC	1 cut(s)	465
BspT107I	GGYRCC	2 cut(s)	857, 895
BspTNI	GGTCTC	2 cut(s)	361, 631
BsrFI	RCCGGY	1 cut(s)	190
BsrGI	TGTACA	1 cut(s)	295
BsrI	ACTGG	6 cut(s)	268, 322, 552, 890, 922, 964
BssAI	RCCGGY	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	182
BssMI	GATC	1 cut(s)	457
BssNI	GRCGYC	1 cut(s)	127
BssT1I	CCWWGG	1 cut(s)	182
Bst2UI	CCWGG	2 cut(s)	52, 283
Bst4CI	ACNGT	1 cut(s)	292
BstACI	GRCGYC	1 cut(s)	127
BstAUI	TGTACA	1 cut(s)	295
BstDEI	CTNAG	3 cut(s)	90, 146, 810
BstF5I	GGATG	1 cut(s)	436
BstFNI	CGCG	1 cut(s)	121
BstHHI	GCGC	2 cut(s)	123, 729
BstKTI	GATC	1 cut(s)	460
BstMAI	GTCTC	2 cut(s)	361, 631
BstMBI	GATC	1 cut(s)	457
BstMWI	GCNNNNNNNGC	7 cut(s)	120, 174, 392, 401, 509, 663, 735
BstNI	CCWGG	2 cut(s)	52, 283
BstSCI	CCNGG	2 cut(s)	50, 281
BstUI	CGCG	1 cut(s)	121
BstV1I	GCAGC	2 cut(s)	884, 1040
BstV2I	GAAGAC	1 cut(s)	475
Bsu15I	ATCGAT	1 cut(s)	460
Bsu36I	CCTNAGG	1 cut(s)	810
BsuRI	GGCC	2 cut(s)	503, 695
BsuTUI	ATCGAT	1 cut(s)	460
BtsCI	GGATG	1 cut(s)	436
BtsIMutI	CAGTG	3 cut(s)	419, 897, 957
CfoI	GCGC	2 cut(s)	123, 729
Cfr10I	RCCGGY	1 cut(s)	190
Cfr13I	GGNCC	4 cut(s)	501, 693, 789, 962
ClaI	ATCGAT	1 cut(s)	460
Csp6I	GTAC	1 cut(s)	296
CviAII	CATG	4 cut(s)	204, 697, 730, 928
CviQI	GTAC	1 cut(s)	296
DdeI	CTNAG	3 cut(s)	90, 146, 810
DpnI	GATC	1 cut(s)	459
DpnII	GATC	1 cut(s)	457
DraI	TTTAAA	2 cut(s)	723, 1039
Ecl136II	GAGCTC	1 cut(s)	476
Eco130I	CCWWGG	1 cut(s)	182
Eco24I	GRGCYC	1 cut(s)	478
Eco31I	GGTCTC	2 cut(s)	361, 631
Eco32I	GATATC	1 cut(s)	201
Eco47I	GGWCC	2 cut(s)	789, 962
Eco53kI	GAGCTC	1 cut(s)	476
Eco57I	CTGAAG	1 cut(s)	847
Eco81I	CCTNAGG	1 cut(s)	810
EcoICRI	GAGCTC	1 cut(s)	476
EcoO109I	RGGNCCY	1 cut(s)	789
EcoRII	CCWGG	2 cut(s)	50, 281
EcoRV	GATATC	1 cut(s)	201
EcoT14I	CCWWGG	1 cut(s)	182
EcoT38I	GRGCYC	1 cut(s)	478
ErhI	CCWWGG	1 cut(s)	182
FaeI	CATG	4 cut(s)	207, 700, 733, 931
FaqI	GGGAC	3 cut(s)	111, 114, 558
FatI	CATG	4 cut(s)	203, 696, 729, 927
Fnu4HI	GCNGC	3 cut(s)	80, 873, 1029
FokI	GGATG	1 cut(s)	423
FriOI	GRGCYC	1 cut(s)	478
Fsp4HI	GCNGC	3 cut(s)	80, 873, 1029
FspBI	CTAG	2 cut(s)	663, 707
GlaI	GCGC	2 cut(s)	122, 728
GluI	GCNGC	3 cut(s)	80, 873, 1029
GsuI	CTGGAG	2 cut(s)	549, 569
HaeIII	GGCC	2 cut(s)	503, 695
HapII	CCGG	1 cut(s)	191
HhaI	GCGC	2 cut(s)	123, 729
Hin1I	GRCGYC	1 cut(s)	127
Hin1II	CATG	4 cut(s)	207, 700, 733, 931
Hin6I	GCGC	2 cut(s)	121, 727
HinP1I	GCGC	2 cut(s)	121, 727
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	1 cut(s)	715
HpaII	CCGG	1 cut(s)	191
HphI	GGTGA	1 cut(s)	8
Hpy166II	GTNNAC	2 cut(s)	87, 305
Hpy188I	TCNGA	3 cut(s)	93, 239, 257
Hpy188III	TCNNGA	4 cut(s)	566, 781, 850, 952
Hpy8I	GTNNAC	2 cut(s)	87, 305
Hpy99I	CGWCG	1 cut(s)	70
HpyAV	CCTTC	4 cut(s)	30, 88, 778, 871
HpyCH4III	ACNGT	1 cut(s)	292
HpyCH4IV	ACGT	4 cut(s)	65, 127, 213, 763
HpyCH4V	TGCA	6 cut(s)	177, 262, 419, 768, 872, 1028
HpyF10VI	GCNNNNNNNGC	7 cut(s)	120, 174, 392, 401, 509, 663, 735
HpyF3I	CTNAG	3 cut(s)	90, 146, 810
HpySE526I	ACGT	4 cut(s)	65, 127, 213, 763
Hsp92I	GRCGYC	1 cut(s)	127
Hsp92II	CATG	4 cut(s)	207, 700, 733, 931
HspAI	GCGC	2 cut(s)	121, 727
Kzo9I	GATC	1 cut(s)	457
Lsp1109I	GCAGC	2 cut(s)	884, 1040
LweI	GCATC	1 cut(s)	208
MaeI	CTAG	2 cut(s)	663, 707
MaeII	ACGT	4 cut(s)	65, 127, 213, 763
MaeIII	GTNAC	4 cut(s)	38, 209, 514, 992
MalI	GATC	1 cut(s)	459
MboI	GATC	1 cut(s)	457
MboII	GAAGA	4 cut(s)	480, 614, 767, 796
MfeI	CAATTG	1 cut(s)	746
MhlI	GDGCHC	2 cut(s)	116, 478
MluCI	AATT	5 cut(s)	479, 553, 746, 836, 1022
MmeI	TCCRAC	1 cut(s)	435
MnlI	CCTC	8 cut(s)	220, 535, 570, 573, 683, 802, 805, 937
MseI	TTAA	4 cut(s)	399, 722, 759, 1038
MslI	CAYNNNNRTG	1 cut(s)	932
MspA1I	CMGCKG	1 cut(s)	82
MspI	CCGG	1 cut(s)	191
MspR9I	CCNGG	2 cut(s)	52, 283
MunI	CAATTG	1 cut(s)	746
Mva1269I	GAATGC	1 cut(s)	177
MvaI	CCWGG	2 cut(s)	52, 283
MvnI	CGCG	1 cut(s)	121
MwoI	GCNNNNNNNGC	7 cut(s)	120, 174, 392, 401, 509, 663, 735
NdeII	GATC	1 cut(s)	457
NlaIII	CATG	4 cut(s)	207, 700, 733, 931
NlaIV	GGNNCC	4 cut(s)	322, 790, 859, 897
NmuCI	GTSAC	1 cut(s)	209
PctI	GAATGC	1 cut(s)	177
PfeI	GAWTC	1 cut(s)	715
PflMI	CCANNNNNTGG	1 cut(s)	498
PkrI	GCNGC	3 cut(s)	81, 874, 1030
PpuMI	RGGWCCY	1 cut(s)	789
PsiI	TTATAA	1 cut(s)	246
Psp124BI	GAGCTC	1 cut(s)	478
Psp1406I	AACGTT	1 cut(s)	763
Psp5II	RGGWCCY	1 cut(s)	789
Psp6I	CCWGG	2 cut(s)	50, 281
PspGI	CCWGG	2 cut(s)	50, 281
PspN4I	GGNNCC	4 cut(s)	322, 790, 859, 897
PspPI	GGNCC	4 cut(s)	501, 693, 789, 962
PspPPI	RGGWCCY	1 cut(s)	789
RsaI	GTAC	1 cut(s)	297
RsaNI	GTAC	1 cut(s)	296
RseI	CAYNNNNRTG	1 cut(s)	932
SacI	GAGCTC	1 cut(s)	478
SaqAI	TTAA	4 cut(s)	399, 722, 759, 1038
SatI	GCNGC	3 cut(s)	80, 873, 1029
Sau3AI	GATC	1 cut(s)	457
Sau96I	GGNCC	4 cut(s)	501, 693, 789, 962
ScrFI	CCNGG	2 cut(s)	52, 283
SduI	GDGCHC	2 cut(s)	116, 478
SfaNI	GCATC	1 cut(s)	208
SinI	GGWCC	2 cut(s)	789, 962
SmiMI	CAYNNNNRTG	1 cut(s)	932
SmlI	CTYRAG	1 cut(s)	779
SmoI	CTYRAG	1 cut(s)	779
Sse9I	AATT	5 cut(s)	479, 553, 746, 836, 1022
SsiI	CCGC	2 cut(s)	80, 119
SspMI	CTAG	2 cut(s)	663, 707
SstI	GAGCTC	1 cut(s)	478
StyD4I	CCNGG	2 cut(s)	50, 281
StyI	CCWWGG	1 cut(s)	182
TaaI	ACNGT	1 cut(s)	292
TaiI	ACGT	4 cut(s)	68, 130, 216, 766
TaqI	TCGA	1 cut(s)	460
TasI	AATT	5 cut(s)	479, 553, 746, 836, 1022
TatI	WGTACW	1 cut(s)	295
TauI	GCSGC	1 cut(s)	82
TfiI	GAWTC	1 cut(s)	715
Tru1I	TTAA	4 cut(s)	399, 722, 759, 1038
Tru9I	TTAA	4 cut(s)	399, 722, 759, 1038
TscAI	CASTG	3 cut(s)	426, 897, 964
TseFI	GTSAC	1 cut(s)	209
TseI	GCWGC	2 cut(s)	872, 1028
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	1 cut(s)	345
TspGWI	ACGGA	1 cut(s)	510
TspRI	CASTG	3 cut(s)	426, 897, 964
Van91I	CCANNNNNTGG	1 cut(s)	498
VpaK11BI	GGWCC	2 cut(s)	789, 962
XapI	RAATTY	2 cut(s)	553, 1022
XspI	CTAG	2 cut(s)	663, 707
ZraI	GACGTC	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.