Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006059.1

Orthogroup ID

OG0014203

Physical Location & Seq

Genomic Coordinates Forward (+)

78832 .. 82106

Gene Structure 3275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006059.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atggggtggccggaagccgccggaaaacaccaccacagtggaggctgcgccgcccatccaaagtcaaaatttgacaaaactcacaacatgaaagttcttcatttcgactccaatttcactttttatatctacaccaaaatcaaatcgttacaagccattttgtgcagagtatatatgtcctctgggcttcaaatgcccccacggatcaccggctatggtggccggaaaagtgatctccgatctgagcaatttgcagctccaccgtgcgacttctcggccttgtacggtcgtgcactgaaaggtgccttcgttcttgcagcaaaaacgaatgtgccagttgtgcctgttactcttatgggaactgggaaaatcatacctgtgggaaaggagggtatcttgaacaccggacctgttaaagttgctatacataagcctatagaaggaactgatacagactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006644 GO:0006650 GO:0006655 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0019637 GO:0022414 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046471 GO:0046474 GO:0046486 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

Acyltransferase

Protein Analysis

152

Amino Acids

16.44

Weight (kDa)

9.62

Isoelectric Point (pI)

40.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30580
fragaria_vesca	FvH4_1g00880 FvH4_1g00880
malus_domestica	MD02G1007100.v1.1 MD15G1144400.v1.1
prunus_persica	Prupe.7G263300_v2.0.a1 Prupe.7G263300_v2.0.a1
pyrus_communis	pycom02g00600 pycom15g13590
rosa_chinensis	RchiOBHm_Chr2g0085591
rosa_multiflora	Rmu_sc0006059.1_g000018 Rmu_sc0016087.1_g000004
rosa_roxburghii	Rroxscaffold_2G00155240
rosa_rugosa	Rorug01G0022900
rosa_samantha	Rh2AG010700 Rh2DG013100
rosa_wichuraiana	Rw2G000950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	302
AciI	CCGC	2 cut(s)	18, 51
AclWI	GGATC	1 cut(s)	212
AcoI	YGGCCR	2 cut(s)	8, 220
AcsI	RAATTY	1 cut(s)	68
AfaI	GTAC	1 cut(s)	284
AfiI	CCNNNNNNNGG	1 cut(s)	440
AgsI	TTSAA	2 cut(s)	191, 400
AleI	CACNNNNGTG	1 cut(s)	36
AluBI	AGCT	1 cut(s)	257
AluI	AGCT	1 cut(s)	257
Alw21I	GWGCWC	1 cut(s)	295
Alw44I	GTGCAC	1 cut(s)	291
AlwI	GGATC	1 cut(s)	212
AoxI	GGCC	3 cut(s)	8, 220, 276
ApaLI	GTGCAC	1 cut(s)	291
ApeKI	GCWGC	3 cut(s)	45, 254, 317
ApoI	RAATTY	1 cut(s)	68
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	1 cut(s)	407
AsuHPI	GGTGA	1 cut(s)	199
AvaII	GGWCC	1 cut(s)	407
BaeGI	GKGCMC	1 cut(s)	295
BanI	GGYRCC	1 cut(s)	302
Bbv12I	GWGCWC	1 cut(s)	295
BbvI	GCAGC	3 cut(s)	32, 266, 329
BccI	CCATC	1 cut(s)	63
BfmI	CTRYAG	1 cut(s)	435
BisI	GCNGC	5 cut(s)	18, 46, 51, 255, 318
BlsI	GCNGC	5 cut(s)	19, 47, 52, 256, 319
Bme18I	GGWCC	1 cut(s)	407
BmgT120I	GGNCC	1 cut(s)	407
BmiI	GGNNCC	1 cut(s)	304
BmrI	ACTGGG	1 cut(s)	372
BmuI	ACTGGG	1 cut(s)	372
BsaJI	CCNNGG	1 cut(s)	200
BsaWI	WCCGGW	1 cut(s)	404
Bsc4I	CCNNNNNNNGG	1 cut(s)	440
Bse118I	RCCGGY	1 cut(s)	209
Bse1I	ACTGG	2 cut(s)	335, 367
BseDI	CCNNGG	1 cut(s)	200
BseGI	GGATG	1 cut(s)	55
BseLI	CCNNNNNNNGG	1 cut(s)	440
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	2 cut(s)	335, 367
BseSI	GKGCMC	1 cut(s)	295
BseXI	GCAGC	3 cut(s)	32, 266, 329
BsgI	GTGCAG	1 cut(s)	184
Bsh1285I	CGRYCG	1 cut(s)	289
BshFI	GGCC	3 cut(s)	10, 222, 278
BshNI	GGYRCC	1 cut(s)	302
BsiEI	CGRYCG	1 cut(s)	289
BsiHKAI	GWGCWC	1 cut(s)	295
BsiSI	CCGG	5 cut(s)	11, 21, 210, 223, 405
BslI	CCNNNNNNNGG	1 cut(s)	440
BsnI	GGCC	3 cut(s)	10, 222, 278
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp143I	GATC	3 cut(s)	204, 232, 239
BspACI	CCGC	2 cut(s)	18, 51
BspANI	GGCC	3 cut(s)	10, 222, 278
BspCNI	CTCAG	1 cut(s)	235
BspLI	GGNNCC	1 cut(s)	304
BspPI	GGATC	1 cut(s)	212
BspT107I	GGYRCC	1 cut(s)	302
BsrFI	RCCGGY	1 cut(s)	209
BsrI	ACTGG	2 cut(s)	335, 367
BssAI	RCCGGY	1 cut(s)	209
BssECI	CCNNGG	1 cut(s)	200
BssMI	GATC	3 cut(s)	204, 232, 239
Bst4CI	ACNGT	3 cut(s)	38, 264, 287
BstDEI	CTNAG	1 cut(s)	243
BstDSI	CCRYGG	1 cut(s)	200
BstENI	CCTNNNNNAGG	1 cut(s)	438
BstF5I	GGATG	1 cut(s)	55
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	3 cut(s)	207, 235, 242
BstMBI	GATC	3 cut(s)	204, 232, 239
BstMCI	CGRYCG	1 cut(s)	289
BstMWI	GCNNNNNNNGC	3 cut(s)	193, 219, 340
BstSFI	CTRYAG	1 cut(s)	435
BstSLI	GKGCMC	1 cut(s)	295
BstV1I	GCAGC	3 cut(s)	32, 266, 329
BstXI	CCANNNNNNTGG	1 cut(s)	38
BsuRI	GGCC	3 cut(s)	10, 222, 278
BtgI	CCRYGG	1 cut(s)	200
BtsCI	GGATG	1 cut(s)	55
BtsIMutI	CAGTG	2 cut(s)	43, 293
CfoI	GCGC	1 cut(s)	50
Cfr10I	RCCGGY	1 cut(s)	209
Cfr13I	GGNCC	1 cut(s)	407
Csp6I	GTAC	1 cut(s)	283
CviAII	CATG	1 cut(s)	88
CviQI	GTAC	1 cut(s)	283
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	3 cut(s)	206, 234, 241
DpnII	GATC	3 cut(s)	204, 232, 239
EaeI	YGGCCR	2 cut(s)	8, 220
Eco47I	GGWCC	1 cut(s)	407
EcoNI	CCTNNNNNAGG	1 cut(s)	438
FaeI	CATG	1 cut(s)	91
FatI	CATG	1 cut(s)	87
Fnu4HI	GCNGC	5 cut(s)	18, 46, 51, 255, 318
FokI	GGATG	1 cut(s)	42
Fsp4HI	GCNGC	5 cut(s)	18, 46, 51, 255, 318
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	5 cut(s)	18, 46, 51, 255, 318
HaeIII	GGCC	3 cut(s)	10, 222, 278
HapII	CCGG	5 cut(s)	11, 21, 210, 223, 405
HhaI	GCGC	1 cut(s)	50
Hin1II	CATG	1 cut(s)	91
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HinfI	GANTC	1 cut(s)	107
HpaII	CCGG	5 cut(s)	11, 21, 210, 223, 405
HphI	GGTGA	1 cut(s)	199
Hpy166II	GTNNAC	1 cut(s)	293
Hpy188I	TCNGA	2 cut(s)	239, 244
Hpy188III	TCNNGA	1 cut(s)	397
Hpy8I	GTNNAC	1 cut(s)	293
HpyAV	CCTTC	2 cut(s)	316, 434
HpyCH4III	ACNGT	3 cut(s)	38, 264, 287
HpyCH4V	TGCA	4 cut(s)	165, 254, 293, 317
HpyF10VI	GCNNNNNNNGC	3 cut(s)	193, 219, 340
HpyF3I	CTNAG	1 cut(s)	243
Hsp92II	CATG	1 cut(s)	91
HspAI	GCGC	1 cut(s)	48
Kzo9I	GATC	3 cut(s)	204, 232, 239
LmnI	GCTCC	1 cut(s)	262
Lsp1109I	GCAGC	3 cut(s)	32, 266, 329
MaeIII	GTNAC	2 cut(s)	147, 346
MalI	GATC	3 cut(s)	206, 234, 241
MboI	GATC	3 cut(s)	204, 232, 239
MboII	GAAGA	1 cut(s)	89
MhlI	GDGCHC	1 cut(s)	295
MluCI	AATT	3 cut(s)	68, 112, 248
MlyI	GAGTC	1 cut(s)	101
MnlI	CCTC	3 cut(s)	35, 190, 382
MseI	TTAA	1 cut(s)	414
MslI	CAYNNNNRTG	2 cut(s)	36, 377
MspI	CCGG	5 cut(s)	11, 21, 210, 223, 405
MwoI	GCNNNNNNNGC	3 cut(s)	193, 219, 340
NdeII	GATC	3 cut(s)	204, 232, 239
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	1 cut(s)	304
NmeAIII	GCCGAG	1 cut(s)	254
OliI	CACNNNNGTG	1 cut(s)	36
PkrI	GCNGC	5 cut(s)	19, 47, 52, 256, 319
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
PspN4I	GGNNCC	1 cut(s)	304
PspPI	GGNCC	1 cut(s)	407
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
RseI	CAYNNNNRTG	2 cut(s)	36, 377
SaqAI	TTAA	1 cut(s)	414
SatI	GCNGC	5 cut(s)	18, 46, 51, 255, 318
Sau3AI	GATC	3 cut(s)	204, 232, 239
Sau96I	GGNCC	1 cut(s)	407
SchI	GAGTC	1 cut(s)	101
SduI	GDGCHC	1 cut(s)	295
SetI	ASST	4 cut(s)	259, 304, 379, 412
SfcI	CTRYAG	1 cut(s)	435
SinI	GGWCC	1 cut(s)	407
SmiMI	CAYNNNNRTG	2 cut(s)	36, 377
Sse9I	AATT	3 cut(s)	68, 112, 248
SsiI	CCGC	2 cut(s)	18, 51
TaaI	ACNGT	3 cut(s)	38, 264, 287
TaqI	TCGA	1 cut(s)	105
TasI	AATT	3 cut(s)	68, 112, 248
TauI	GCSGC	2 cut(s)	20, 53
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TscAI	CASTG	2 cut(s)	43, 300
TseI	GCWGC	3 cut(s)	45, 254, 317
TspDTI	ATGAA	2 cut(s)	89, 104
TspGWI	ACGGA	1 cut(s)	217
TspRI	CASTG	2 cut(s)	43, 300
VneI	GTGCAC	1 cut(s)	291
VpaK11BI	GGWCC	1 cut(s)	407
XagI	CCTNNNNNAGG	1 cut(s)	438
XapI	RAATTY	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.