Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0014203

Physical Location & Seq

Genomic Coordinates Forward (+)

338482 .. 339397

Gene Structure 916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g00600.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGCTGATACTCCATCCTCTTGTTCTGTTGTTGGATCAGTACAAAAGAAAAGCTCATATTTTTATTGCCAAGGTTTGGGCCACTGCTACTGTTACACCATTTGTTAGGATCAAGTATGAGGGACTGGAGAATTTGCCTTCTCCGGATACTCCTGCTGTGTATGTTTCCAACCACCAGAGCTTTTTAGACATCTATGTTCTTTTCACAATTGGGCGACCCTTTAAGTTTATCAGCAAGACTAGCATATTTCTCTATCCCGTTATTGGGTGGGCCATGTTTCTGATGGGTGTAATTCCCTTAAAGCGCATGGACAGCAAAAGCCAATTGGAATGCCTTAAGCGTTGCATAGAGCTTATTAAGAAGGGGGCTTCTGTCTTTTTCTTTCCTGAGGGGACACGCAGCAAAGATGGAAAATTAGGTGCTTTCAAGAGAGGTGCCTTTAGTGTTGCAGCGAAAACCAAGGTACCAGTAGTGCCCATTACCCTTATAGGAACTGGAAAAATCATGCCTCCGGGAAGGGAGGATATCTTGAATACTGGAGCTGTTAAAGTCATTATTCATAAACCTATAGAAGGAAATGATACAGAAGCACTGTGTAGTGAAACTAGAAACGTAATCGCTGGTGCACTTGATCGTCAAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006644 GO:0006650 GO:0006655 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0019637 GO:0022414 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046471 GO:0046474 GO:0046486 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

Acyltransferase

Protein Analysis

215

Amino Acids

23.73

Weight (kDa)

9.73

Isoelectric Point (pI)

38.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30580
fragaria_vesca	FvH4_1g00880 FvH4_1g00880
malus_domestica	MD02G1007100.v1.1 MD15G1144400.v1.1
prunus_persica	Prupe.7G263300_v2.0.a1 Prupe.7G263300_v2.0.a1
pyrus_communis	pycom02g00600 pycom15g13590
rosa_chinensis	RchiOBHm_Chr2g0085591
rosa_multiflora	Rmu_sc0006059.1_g000018 Rmu_sc0016087.1_g000004
rosa_roxburghii	Rroxscaffold_2G00155240
rosa_rugosa	Rorug01G0022900
rosa_samantha	Rh2AG010700 Rh2DG013100
rosa_wichuraiana	Rw2G000950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	463
AccB1I	GGYRCC	2 cut(s)	434, 463
AccB7I	CCANNNNNTGG	1 cut(s)	75
AccIII	TCCGGA	1 cut(s)	142
AclWI	GGATC	2 cut(s)	42, 116
AcsI	RAATTY	1 cut(s)	130
AfaI	GTAC	2 cut(s)	41, 465
AfiI	CCNNNNNNNGG	4 cut(s)	75, 263, 264, 572
AflII	CTTAAG	1 cut(s)	335
AgsI	TTSAA	2 cut(s)	427, 532
AluBI	AGCT	4 cut(s)	53, 180, 352, 542
AluI	AGCT	4 cut(s)	53, 180, 352, 542
Alw21I	GWGCWC	1 cut(s)	628
Alw44I	GTGCAC	1 cut(s)	624
AlwI	GGATC	2 cut(s)	42, 116
Aor13HI	TCCGGA	1 cut(s)	142
AoxI	GGCC	2 cut(s)	78, 270
ApaLI	GTGCAC	1 cut(s)	624
ApeKI	GCWGC	2 cut(s)	399, 449
ApoI	RAATTY	1 cut(s)	130
Asp718I	GGTACC	1 cut(s)	463
AspLEI	GCGC	1 cut(s)	306
AspS9I	GGNCC	2 cut(s)	78, 270
AsuC2I	CCSGG	1 cut(s)	513
AxyI	CCTNAGG	1 cut(s)	387
BaeGI	GKGCMC	2 cut(s)	477, 628
BaeI	ACNNNNGTAYC	2 cut(s)	447, 480
BanI	GGYRCC	2 cut(s)	434, 463
Bbv12I	GWGCWC	1 cut(s)	628
BbvI	GCAGC	2 cut(s)	411, 461
BccI	CCATC	3 cut(s)	21, 277, 401
BciVI	GTATCC	1 cut(s)	139
BcnI	CCSGG	1 cut(s)	513
BfaI	CTAG	2 cut(s)	240, 606
BfmI	CTRYAG	1 cut(s)	567
BfrI	CTTAAG	1 cut(s)	335
BfuI	GTATCC	1 cut(s)	139
BisI	GCNGC	2 cut(s)	400, 450
BlsI	GCNGC	2 cut(s)	401, 451
Bme1390I	CCNGG	1 cut(s)	513
BmgT120I	GGNCC	2 cut(s)	78, 270
BmiI	GGNNCC	2 cut(s)	436, 465
BmrFI	CCNGG	1 cut(s)	513
BpmI	CTGGAG	2 cut(s)	146, 558
BpuMI	CCSGG	1 cut(s)	513
BsaJI	CCNNGG	2 cut(s)	69, 459
BsaWI	WCCGGW	1 cut(s)	142
Bsc4I	CCNNNNNNNGG	4 cut(s)	75, 263, 264, 572
Bse1I	ACTGG	4 cut(s)	129, 467, 499, 541
Bse21I	CCTNAGG	1 cut(s)	387
BseAI	TCCGGA	1 cut(s)	142
BseDI	CCNNGG	2 cut(s)	69, 459
BseGI	GGATG	1 cut(s)	13
BseLI	CCNNNNNNNGG	4 cut(s)	75, 263, 264, 572
BseMII	CTCAG	1 cut(s)	378
BseNI	ACTGG	4 cut(s)	129, 467, 499, 541
BseSI	GKGCMC	2 cut(s)	477, 628
BseXI	GCAGC	2 cut(s)	411, 461
BshFI	GGCC	2 cut(s)	80, 272
BshNI	GGYRCC	2 cut(s)	434, 463
BsiHKAI	GWGCWC	1 cut(s)	628
BsiSI	CCGG	2 cut(s)	143, 512
BslFI	GGGAC	2 cut(s)	135, 406
BslI	CCNNNNNNNGG	4 cut(s)	75, 263, 264, 572
BsmFI	GGGAC	2 cut(s)	135, 406
BsmI	GAATGC	1 cut(s)	335
BsnI	GGCC	2 cut(s)	80, 272
Bsp1286I	GDGCHC	2 cut(s)	477, 628
Bsp13I	TCCGGA	1 cut(s)	142
Bsp143I	GATC	3 cut(s)	34, 108, 631
BspANI	GGCC	2 cut(s)	80, 272
BspCNI	CTCAG	1 cut(s)	379
BspEI	TCCGGA	1 cut(s)	142
BspLI	GGNNCC	2 cut(s)	436, 465
BspPI	GGATC	2 cut(s)	42, 116
BspT107I	GGYRCC	2 cut(s)	434, 463
BspTI	CTTAAG	1 cut(s)	335
BsrI	ACTGG	4 cut(s)	129, 467, 499, 541
BssECI	CCNNGG	2 cut(s)	69, 459
BssMI	GATC	3 cut(s)	34, 108, 631
BssT1I	CCWWGG	2 cut(s)	69, 459
Bst4CI	ACNGT	2 cut(s)	91, 594
BstAFI	CTTAAG	1 cut(s)	335
BstDEI	CTNAG	1 cut(s)	387
BstENI	CCTNNNNNAGG	1 cut(s)	570
BstF5I	GGATG	1 cut(s)	13
BstHHI	GCGC	1 cut(s)	306
BstKTI	GATC	3 cut(s)	37, 111, 634
BstMBI	GATC	3 cut(s)	34, 108, 631
BstMWI	GCNNNNNNNGC	2 cut(s)	240, 312
BstSCI	CCNGG	1 cut(s)	511
BstSFI	CTRYAG	1 cut(s)	567
BstSLI	GKGCMC	2 cut(s)	477, 628
BstV1I	GCAGC	2 cut(s)	411, 461
Bsu36I	CCTNAGG	1 cut(s)	387
BsuI	GTATCC	1 cut(s)	139
BsuRI	GGCC	2 cut(s)	80, 272
BtsCI	GGATG	1 cut(s)	13
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	2 cut(s)	81, 590
CfoI	GCGC	1 cut(s)	306
Cfr13I	GGNCC	2 cut(s)	78, 270
Csp6I	GTAC	2 cut(s)	40, 464
CviAII	CATG	3 cut(s)	274, 307, 505
CviJI	RGCY	9 cut(s)	53, 80, 180, 272, 321, 352, 368, 542, 642
CviKI_1	RGCY	9 cut(s)	53, 80, 180, 272, 321, 352, 368, 542, 642
CviQI	GTAC	2 cut(s)	40, 464
DdeI	CTNAG	1 cut(s)	387
DpnI	GATC	3 cut(s)	36, 110, 633
DpnII	GATC	3 cut(s)	34, 108, 631
Eco130I	CCWWGG	2 cut(s)	69, 459
Eco32I	GATATC	1 cut(s)	526
Eco81I	CCTNAGG	1 cut(s)	387
EcoNI	CCTNNNNNAGG	1 cut(s)	570
EcoRV	GATATC	1 cut(s)	526
EcoT14I	CCWWGG	2 cut(s)	69, 459
ErhI	CCWWGG	2 cut(s)	69, 459
FaeI	CATG	3 cut(s)	277, 310, 508
FaqI	GGGAC	2 cut(s)	135, 406
FatI	CATG	3 cut(s)	273, 306, 504
Fnu4HI	GCNGC	2 cut(s)	400, 450
Fsp4HI	GCNGC	2 cut(s)	400, 450
FspBI	CTAG	2 cut(s)	240, 606
GlaI	GCGC	1 cut(s)	305
GluI	GCNGC	2 cut(s)	400, 450
GsuI	CTGGAG	2 cut(s)	146, 558
HaeIII	GGCC	2 cut(s)	80, 272
HapII	CCGG	2 cut(s)	143, 512
HhaI	GCGC	1 cut(s)	306
Hin1II	CATG	3 cut(s)	277, 310, 508
Hin6I	GCGC	1 cut(s)	304
HinP1I	GCGC	1 cut(s)	304
HpaII	CCGG	2 cut(s)	143, 512
Hpy166II	GTNNAC	1 cut(s)	626
Hpy188I	TCNGA	1 cut(s)	282
Hpy188III	TCNNGA	4 cut(s)	143, 386, 427, 529
Hpy8I	GTNNAC	1 cut(s)	626
HpyAV	CCTTC	4 cut(s)	147, 355, 510, 566
HpyCH4III	ACNGT	2 cut(s)	91, 594
HpyCH4IV	ACGT	1 cut(s)	612
HpyCH4V	TGCA	3 cut(s)	345, 449, 626
HpyF10VI	GCNNNNNNNGC	2 cut(s)	240, 312
HpyF3I	CTNAG	1 cut(s)	387
HpySE526I	ACGT	1 cut(s)	612
Hsp92II	CATG	3 cut(s)	277, 310, 508
HspAI	GCGC	1 cut(s)	304
Kpn2I	TCCGGA	1 cut(s)	142
KpnI	GGTACC	1 cut(s)	467
Kzo9I	GATC	3 cut(s)	34, 108, 631
LmnI	GCTCC	1 cut(s)	539
Lsp1109I	GCAGC	2 cut(s)	411, 461
MaeI	CTAG	2 cut(s)	240, 606
MaeII	ACGT	1 cut(s)	612
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	3 cut(s)	36, 110, 633
MboI	GATC	3 cut(s)	34, 108, 631
MfeI	CAATTG	2 cut(s)	207, 323
MhlI	GDGCHC	2 cut(s)	477, 628
MluCI	AATT	5 cut(s)	130, 207, 291, 323, 413
MmeI	TCCRAC	2 cut(s)	12, 192
MnlI	CCTC	6 cut(s)	27, 112, 382, 425, 514, 519
MroI	TCCGGA	1 cut(s)	142
MseI	TTAA	5 cut(s)	222, 299, 336, 357, 546
MspCI	CTTAAG	1 cut(s)	335
MspI	CCGG	2 cut(s)	143, 512
MspR9I	CCNGG	1 cut(s)	513
MunI	CAATTG	2 cut(s)	207, 323
Mva1269I	GAATGC	1 cut(s)	335
MwoI	GCNNNNNNNGC	2 cut(s)	240, 312
NciI	CCSGG	1 cut(s)	513
NdeII	GATC	3 cut(s)	34, 108, 631
NlaIII	CATG	3 cut(s)	277, 310, 508
NlaIV	GGNNCC	2 cut(s)	436, 465
PctI	GAATGC	1 cut(s)	335
PflMI	CCANNNNNTGG	1 cut(s)	75
PfoI	TCCNGGA	1 cut(s)	511
PkrI	GCNGC	2 cut(s)	401, 451
PspN4I	GGNNCC	2 cut(s)	436, 465
PspPI	GGNCC	2 cut(s)	78, 270
RsaI	GTAC	2 cut(s)	41, 465
RsaNI	GTAC	2 cut(s)	40, 464
SaqAI	TTAA	5 cut(s)	222, 299, 336, 357, 546
SatI	GCNGC	2 cut(s)	400, 450
Sau3AI	GATC	3 cut(s)	34, 108, 631
Sau96I	GGNCC	2 cut(s)	78, 270
ScrFI	CCNGG	1 cut(s)	513
SduI	GDGCHC	2 cut(s)	477, 628
SfcI	CTRYAG	1 cut(s)	567
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	5 cut(s)	130, 207, 291, 323, 413
SspMI	CTAG	2 cut(s)	240, 606
StyD4I	CCNGG	1 cut(s)	511
StyI	CCWWGG	2 cut(s)	69, 459
TaaI	ACNGT	2 cut(s)	91, 594
TaiI	ACGT	1 cut(s)	615
TasI	AATT	5 cut(s)	130, 207, 291, 323, 413
TatI	WGTACW	1 cut(s)	39
Tru1I	TTAA	5 cut(s)	222, 299, 336, 357, 546
Tru9I	TTAA	5 cut(s)	222, 299, 336, 357, 546
TscAI	CASTG	2 cut(s)	88, 597
TseI	GCWGC	2 cut(s)	399, 449
TspDTI	ATGAA	1 cut(s)	548
TspRI	CASTG	2 cut(s)	88, 597
Van91I	CCANNNNNTGG	1 cut(s)	75
Vha464I	CTTAAG	1 cut(s)	335
VneI	GTGCAC	1 cut(s)	624
XagI	CCTNNNNNAGG	1 cut(s)	570
XapI	RAATTY	1 cut(s)	130
XcmI	CCANNNNNNNNNTGG	1 cut(s)	280
XspI	CTAG	2 cut(s)	240, 606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.