FvH4_1g01150

Protein RTF2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0014164
Physical Location & Seq
Forward (+)
584018 .. 585539
1522 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g01150.t1

Sequence Viewer

Length: 1128 bp
ATGAATCCCAATCCCCAATCCTTCCAAATCTTTCTCCAATCGCCAGACCTCCAAATCCCAACCCAAACCCTAACCCTATCCCCAATCCAAACCCCAACTCTCCACCACCTCAAGCTCTCTCTTTTCCCCCAAACCCTCCCCTCCCTCTTCTTCACCCTCAACGGCAAACCCTTACTCGACTCCACCCCTCTCCAATTCCCCCCTCTTTCAACCCTAATTCTCCGAATCAGAACCCCCGGCGGCGGCGGCGATGGCGGCGCCACCGGTGCCGAGTCTCGCGACTGCTACCTCAACATGTACGCGGAGAAGAAGCCCGACAAGGTCGACCCCTACGAGCAGAGGCTCTCGAAGTTTCTGAACTGCGCGCTTTCGAATGAGCCGCTGAAGGATCCTTGCGTCGTGGATTTGATCGGGAATGTGTTTAACAAGGAGGCTCTGGTTGAGGCATTGTTGGGGAAGAAGGTGCCGAAGGCTTTCGGACACATTAAGGGGCTGAAGGACATGATCCCTGTGCATTTCGCTTCGATTTCCGGGAAGGAAATGGAGTCTCAGGCGACGGTTAGTGGGCCGAGGTTTCAGTGCCCGATTACGGGGCTGGAGTTTAATGGAAAGAGTAACTTTCTGGCGCTGAGGAGCTGCGGGCATGTGTTGAGTGTGAAGGCGTTGAAGGAGGTGAAGTCCTCGGCGTGTTTAGTGTGTCATGTGGGGTTTTCGGAGGAGGATAAGATTGTGATCAATGGGAATGAGGAGGAGGTCGCGGCGCTGAGGGAGAGGATGGAGGCTGAGAAGGCGAAAACGAGGGTGAAGAAGGTGAAGAAGGTGAAGAAGCTGAAAAATGGGGAGGAGGAGGGTGTGGAGGCTGCGAGGTTGAGTGGTACGAAGCATGGGATTGATGTGAAGGGTGGAGAGAAGGCTTTGGCGAAGGTGGAGGGGAATGGGAAGGTTGGAAATGGTGGGGAGAATGTGAAGGGTGGGAGTAATGGTCCTGCGGTGAAGAAGTTTAAGGCGGTGGATGTAGCCCCGGCTAATGCTACTAAGGAAGTTTATGCTTCGATTTTTACTTCTTCGAGCACAAAGAAGTTTAAGGAGACGTATTCTTGTCGATCTCTCCCACTTGGTCGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rtf2

Protein Analysis

376

Amino Acids

40.5

Weight (kDa)

9.3

Isoelectric Point (pI)

31.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rtf2 PF04641 81 - 360 2.4e-73 Rtf2 RING-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014164)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58020
fragaria_vesca FvH4_1g01150
malus_domestica MD15G1155100.v1.1
prunus_persica Prupe.7G260500_v2.0.a1
pyrus_communis pycom15g13860
rosa_chinensis RchiOBHm_Chr2g0085941
rosa_laevigata RLG00000015728
rosa_multiflora Rmu_sc0001748.1_g000001 Rmu_ssc0000355.1_g000028
rosa_roxburghii Rroxscaffold_2G00154910
rosa_rugosa Rorug01G0464500 Rorug01G0464500
rosa_samantha Rh2AG013500 Rh2BG014200 Rh2CG014700 Rh2DG016000
rosa_wichuraiana Rw2G001210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 257, 266, 463
AccI GTMKAC 1 cut(s) 324
AccII CGCG 4 cut(s) 279, 302, 365, 758
AclWI GGATC 3 cut(s) 383, 396, 499
AcuI CTGAAG 2 cut(s) 404, 515
AcyI GRCGYC 1 cut(s) 258
AfaI GTAC 2 cut(s) 299, 877
AfiI CCNNNNNNNGG 3 cut(s) 242, 589, 590
AflIII ACRYGT 1 cut(s) 294
AgeI ACCGGT 1 cut(s) 263
AgsI TTSAA 2 cut(s) 210, 667
AluBI AGCT 3 cut(s) 115, 636, 829
AluI AGCT 3 cut(s) 115, 636, 829
Alw21I GWGCWC 1 cut(s) 1073
Alw26I GTCTC 3 cut(s) 279, 552, 1082
AlwI GGATC 3 cut(s) 383, 396, 499
AoxI GGCC 1 cut(s) 566
ApeKI GCWGC 2 cut(s) 636, 860
AsiGI ACCGGT 1 cut(s) 263
Asp700I GAANNNNTTC 1 cut(s) 473
AspLEI GCGC 5 cut(s) 260, 365, 367, 628, 763
AspS9I GGNCC 2 cut(s) 566, 983
AsuC2I CCSGG 3 cut(s) 237, 532, 1022
AsuHPI GGTGA 6 cut(s) 145, 685, 814, 823, 832, 1003
AsuII TTCGAA 1 cut(s) 371
AvaII GGWCC 1 cut(s) 983
BaeGI GKGCMC 1 cut(s) 584
BamHI GGATCC 1 cut(s) 388
BanI GGYRCC 3 cut(s) 257, 266, 463
Bbv12I GWGCWC 1 cut(s) 1073
BbvCI CCTCAGC 2 cut(s) 629, 764
BbvI GCAGC 2 cut(s) 623, 847
BccI CCATC 2 cut(s) 245, 769
BceAI ACGGC 1 cut(s) 178
BclI TGATCA 1 cut(s) 732
BcnI CCSGG 3 cut(s) 237, 532, 1022
BcoDI GTCTC 3 cut(s) 279, 552, 1082
BfoI RGCGCY 3 cut(s) 261, 629, 764
BisI GCNGC 8 cut(s) 241, 244, 247, 256, 380, 637, 759, 861
BlsI GCNGC 8 cut(s) 242, 245, 248, 257, 381, 638, 760, 862
Bme1390I CCNGG 3 cut(s) 237, 532, 1022
Bme18I GGWCC 1 cut(s) 983
BmgT120I GGNCC 2 cut(s) 566, 983
BmiI GGNNCC 4 cut(s) 259, 268, 390, 465
BmrFI CCNGG 3 cut(s) 237, 532, 1022
BpmI CTGGAG 1 cut(s) 617
Bpu10I CCTNAGC 2 cut(s) 629, 764
Bpu14I TTCGAA 1 cut(s) 371
BpuEI CTTGAG 1 cut(s) 95
BpuMI CCSGG 3 cut(s) 237, 532, 1022
BsaBI GATNNNNATC 1 cut(s) 731
BsaHI GRCGYC 1 cut(s) 258
BsaJI CCNNGG 4 cut(s) 235, 569, 681, 1020
BsaWI WCCGGW 1 cut(s) 263
BsaXI ACNNNNNCTCC 4 cut(s) 662, 692, 967, 997
Bsc4I CCNNNNNNNGG 3 cut(s) 242, 589, 590
Bse118I RCCGGY 1 cut(s) 263
Bse8I GATNNNNATC 1 cut(s) 731
BseDI CCNNGG 4 cut(s) 235, 569, 681, 1020
BseGI GGATG 2 cut(s) 780, 1018
BseJI GATNNNNATC 1 cut(s) 731
BseLI CCNNNNNNNGG 3 cut(s) 242, 589, 590
BseMII CTCAG 4 cut(s) 563, 620, 755, 774
BsePI GCGCGC 1 cut(s) 363
BseRI GAGGAG 6 cut(s) 646, 731, 761, 764, 857, 860
BseSI GKGCMC 1 cut(s) 584
BseXI GCAGC 2 cut(s) 623, 847
Bsh1236I CGCG 4 cut(s) 279, 302, 365, 758
BshFI GGCC 1 cut(s) 568
BshNI GGYRCC 3 cut(s) 257, 266, 463
BshTI ACCGGT 1 cut(s) 263
BsiHKAI GWGCWC 1 cut(s) 1073
BsiSI CCGG 4 cut(s) 237, 264, 531, 1022
BslI CCNNNNNNNGG 3 cut(s) 242, 589, 590
BsmAI GTCTC 3 cut(s) 279, 552, 1082
BsmBI CGTCTC 1 cut(s) 1082
BsnI GGCC 1 cut(s) 568
Bsp119I TTCGAA 1 cut(s) 371
Bsp1286I GDGCHC 2 cut(s) 584, 1073
Bsp143I GATC 5 cut(s) 388, 408, 504, 732, 1103
Bsp68I TCGCGA 1 cut(s) 279
BspANI GGCC 1 cut(s) 568
BspCNI CTCAG 4 cut(s) 562, 621, 756, 775
BspFNI CGCG 4 cut(s) 279, 302, 365, 758
BspLI GGNNCC 4 cut(s) 259, 268, 390, 465
BspPI GGATC 3 cut(s) 383, 396, 499
BspT104I TTCGAA 1 cut(s) 371
BspT107I GGYRCC 3 cut(s) 257, 266, 463
BsrFI RCCGGY 1 cut(s) 263
BssAI RCCGGY 1 cut(s) 263
BssECI CCNNGG 4 cut(s) 235, 569, 681, 1020
BssHII GCGCGC 1 cut(s) 363
BssMI GATC 5 cut(s) 388, 408, 504, 732, 1103
BssNI GRCGYC 1 cut(s) 258
Bst4CI ACNGT 1 cut(s) 559
Bst6I CTCTTC 1 cut(s) 152
BstACI GRCGYC 1 cut(s) 258
BstBI TTCGAA 1 cut(s) 371
BstC8I GCNNGC 2 cut(s) 365, 641
BstDEI CTNAG 5 cut(s) 549, 629, 764, 783, 1035
BstF5I GGATG 2 cut(s) 780, 1018
BstFNI CGCG 4 cut(s) 279, 302, 365, 758
BstH2I RGCGCY 3 cut(s) 261, 629, 764
BstHHI GCGC 5 cut(s) 260, 365, 367, 628, 763
BstKTI GATC 5 cut(s) 391, 411, 507, 735, 1106
BstMAI GTCTC 3 cut(s) 279, 552, 1082
BstMBI GATC 5 cut(s) 388, 408, 504, 732, 1103
BstMWI GCNNNNNNNGC 5 cut(s) 246, 252, 255, 266, 788
BstNSI RCATGY 2 cut(s) 298, 647
BstSCI CCNGG 3 cut(s) 235, 530, 1020
BstSLI GKGCMC 1 cut(s) 584
BstUI CGCG 4 cut(s) 279, 302, 365, 758
BstV1I GCAGC 2 cut(s) 623, 847
BstX2I RGATCY 1 cut(s) 388
BstYI RGATCY 1 cut(s) 388
BsuRI GGCC 1 cut(s) 568
BtgZI GCGATG 1 cut(s) 264
BtsCI GGATG 2 cut(s) 780, 1018
BtsIMutI CAGTG 1 cut(s) 584
BtuMI TCGCGA 1 cut(s) 279
Cac8I GCNNGC 2 cut(s) 365, 641
CfoI GCGC 5 cut(s) 260, 365, 367, 628, 763
Cfr10I RCCGGY 1 cut(s) 263
Cfr13I GGNCC 2 cut(s) 566, 983
CseI GACGC 1 cut(s) 385
Csp6I GTAC 2 cut(s) 298, 876
CspAI ACCGGT 1 cut(s) 263
CviAII CATG 5 cut(s) 295, 502, 644, 701, 884
CviQI GTAC 2 cut(s) 298, 876
DdeI CTNAG 5 cut(s) 549, 629, 764, 783, 1035
DinI GGCGCC 1 cut(s) 259
DpnI GATC 5 cut(s) 390, 410, 506, 734, 1105
DpnII GATC 5 cut(s) 388, 408, 504, 732, 1103
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
Eco47I GGWCC 1 cut(s) 983
Eco57I CTGAAG 2 cut(s) 404, 515
EgeI GGCGCC 1 cut(s) 259
EheI GGCGCC 1 cut(s) 259
Esp3I CGTCTC 1 cut(s) 1082
FaeI CATG 5 cut(s) 298, 505, 647, 704, 887
FaiI YATR 6 cut(s) 296, 503, 645, 702, 885, 1047
FalI AAGNNNNNCTT 2 cut(s) 602, 634
FatI CATG 5 cut(s) 294, 501, 643, 700, 883
FauI CCCGC 1 cut(s) 632
FbaI TGATCA 1 cut(s) 732
FblI GTMKAC 1 cut(s) 324
Fnu4HI GCNGC 8 cut(s) 241, 244, 247, 256, 380, 637, 759, 861
FokI GGATG 2 cut(s) 787, 1025
Fsp4HI GCNGC 8 cut(s) 241, 244, 247, 256, 380, 637, 759, 861
GlaI GCGC 5 cut(s) 259, 364, 366, 627, 762
GluI GCNGC 8 cut(s) 241, 244, 247, 256, 380, 637, 759, 861
GsuI CTGGAG 1 cut(s) 617
HaeII RGCGCY 3 cut(s) 261, 629, 764
HaeIII GGCC 1 cut(s) 568
HapII CCGG 4 cut(s) 237, 264, 531, 1022
HgaI GACGC 1 cut(s) 385
HhaI GCGC 5 cut(s) 260, 365, 367, 628, 763
Hin1I GRCGYC 1 cut(s) 258
Hin1II CATG 5 cut(s) 298, 505, 647, 704, 887
Hin6I GCGC 5 cut(s) 258, 363, 365, 626, 761
HinP1I GCGC 5 cut(s) 258, 363, 365, 626, 761
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HinfI GANTC 5 cut(s) 4, 179, 225, 272, 545
HpaII CCGG 4 cut(s) 237, 264, 531, 1022
HphI GGTGA 6 cut(s) 145, 685, 814, 823, 832, 1003
Hpy166II GTNNAC 1 cut(s) 325
Hpy188I TCNGA 5 cut(s) 224, 230, 357, 479, 715
Hpy188III TCNNGA 3 cut(s) 278, 346, 412
Hpy8I GTNNAC 1 cut(s) 325
Hpy99I CGWCG 2 cut(s) 401, 559
HpyCH4III ACNGT 1 cut(s) 559
HpyCH4IV ACGT 1 cut(s) 1091
HpyCH4V TGCA 1 cut(s) 514
HpyF10VI GCNNNNNNNGC 5 cut(s) 246, 252, 255, 266, 788
HpyF3I CTNAG 5 cut(s) 549, 629, 764, 783, 1035
HpySE526I ACGT 1 cut(s) 1091
Hsp92I GRCGYC 1 cut(s) 258
Hsp92II CATG 5 cut(s) 298, 505, 647, 704, 887
HspAI GCGC 5 cut(s) 258, 363, 365, 626, 761
KasI GGCGCC 1 cut(s) 257
Ksp22I TGATCA 1 cut(s) 732
Kzo9I GATC 5 cut(s) 388, 408, 504, 732, 1103
LmnI GCTCC 1 cut(s) 633
Lsp1109I GCAGC 2 cut(s) 623, 847
MaeII ACGT 1 cut(s) 1091
MaeIII GTNAC 1 cut(s) 614
MalI GATC 5 cut(s) 390, 410, 506, 734, 1105
MboI GATC 5 cut(s) 388, 408, 504, 732, 1103
MboII GAAGA 9 cut(s) 139, 142, 319, 469, 817, 826, 835, 1006, 1056
MflI RGATCY 1 cut(s) 388
MhlI GDGCHC 2 cut(s) 584, 1073
MluCI AATT 3 cut(s) 194, 216, 1123
Mly113I GGCGCC 1 cut(s) 258
MlyI GAGTC 3 cut(s) 173, 281, 554
MmeI TCCRAC 1 cut(s) 925
MroXI GAANNNNTTC 1 cut(s) 473
MseI TTAA 5 cut(s) 423, 486, 603, 1002, 1083
MspA1I CMGCKG 1 cut(s) 382
MspI CCGG 4 cut(s) 237, 264, 531, 1022
MspR9I CCNGG 3 cut(s) 237, 532, 1022
MvnI CGCG 4 cut(s) 279, 302, 365, 758
MwoI GCNNNNNNNGC 5 cut(s) 246, 252, 255, 266, 788
NarI GGCGCC 1 cut(s) 258
NciI CCSGG 3 cut(s) 237, 532, 1022
NdeII GATC 5 cut(s) 388, 408, 504, 732, 1103
NlaIII CATG 5 cut(s) 298, 505, 647, 704, 887
NlaIV GGNNCC 4 cut(s) 259, 268, 390, 465
NmeAIII GCCGAG 3 cut(s) 295, 594, 662
NruI TCGCGA 1 cut(s) 279
NspI RCATGY 2 cut(s) 298, 647
NspV TTCGAA 1 cut(s) 371
PauI GCGCGC 1 cut(s) 363
PciI ACATGT 1 cut(s) 294
PcsI WCGNNNNNNNCGW 1 cut(s) 330
PdmI GAANNNNTTC 1 cut(s) 473
PfeI GAWTC 2 cut(s) 4, 225
PflFI GACNNNGTC 1 cut(s) 320
PfoI TCCNGGA 1 cut(s) 530
PinAI ACCGGT 1 cut(s) 263
PkrI GCNGC 8 cut(s) 242, 245, 248, 257, 381, 638, 760, 862
PleI GAGTC 3 cut(s) 173, 280, 553
PluTI GGCGCC 1 cut(s) 261
PpsI GAGTC 3 cut(s) 173, 280, 553
PscI ACATGT 1 cut(s) 294
PspN4I GGNNCC 4 cut(s) 259, 268, 390, 465
PspPI GGNCC 2 cut(s) 566, 983
PsuI RGATCY 1 cut(s) 388
PsyI GACNNNGTC 1 cut(s) 320
PteI GCGCGC 1 cut(s) 363
RruI TCGCGA 1 cut(s) 279
RsaI GTAC 2 cut(s) 299, 877
RsaNI GTAC 2 cut(s) 298, 876
SalI GTCGAC 1 cut(s) 323
SaqAI TTAA 5 cut(s) 423, 486, 603, 1002, 1083
SatI GCNGC 8 cut(s) 241, 244, 247, 256, 380, 637, 759, 861
Sau3AI GATC 5 cut(s) 388, 408, 504, 732, 1103
Sau96I GGNCC 2 cut(s) 566, 983
SchI GAGTC 3 cut(s) 173, 281, 554
ScrFI CCNGG 3 cut(s) 237, 532, 1022
SduI GDGCHC 2 cut(s) 584, 1073
SfoI GGCGCC 1 cut(s) 259
SfuI TTCGAA 1 cut(s) 371
SgrAI CRCCGGYG 1 cut(s) 263
SinI GGWCC 1 cut(s) 983
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 3 cut(s) 194, 216, 1123
SspDI GGCGCC 1 cut(s) 257
StyD4I CCNGG 3 cut(s) 235, 530, 1020
TaaI ACNGT 1 cut(s) 559
TaiI ACGT 1 cut(s) 1094
TaqI TCGA 9 cut(s) 177, 324, 347, 371, 524, 1052, 1067, 1102, 1120
TasI AATT 3 cut(s) 194, 216, 1123
TauI GCSGC 6 cut(s) 243, 246, 249, 258, 382, 761
TfiI GAWTC 2 cut(s) 4, 225
Tru1I TTAA 5 cut(s) 423, 486, 603, 1002, 1083
Tru9I TTAA 5 cut(s) 423, 486, 603, 1002, 1083
TscAI CASTG 1 cut(s) 584
TseI GCWGC 2 cut(s) 636, 860
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 584
Tth111I GACNNNGTC 1 cut(s) 320
VpaK11BI GGWCC 1 cut(s) 983
XceI RCATGY 2 cut(s) 298, 647
XmiI GTMKAC 1 cut(s) 324
XmnI GAANNNNTTC 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.