Prupe.7G260500_v2.0.a1

Protein RTF2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0014164
Physical Location & Seq
Reverse (-)
21666556 .. 21668986
2431 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G260500.1

Sequence Viewer

Length: 1146 bp
ATGCATCCCAAACTTCACAATTTCCAAATCTTCCTCCAATCTCCAGACCTCCAAATTCCGACCCAAACCATAACCCTAGCCCCAACTCAGACCCCAACTCTCCGTCACCTCAAGCTCTCTATTTTCTCCCATACCCTGCCATCGCTTTACTTCACCCTCAATGGTAAACCCCTGAACGACTCCACTCCACTTCTCGATTCCCAAATTACCCCTCTTTCTACCCTCGTTTTACGTATTAGAGCTTGCGGAGGTGGCGGCGATGGCGGGGCCACGGGGGCCGAGTCCCGCGACTGTTACCTCAAGATGTATGCTGAGAAGAAGCCCGATAAGGTTGATCCAAATGAGCAGAGGCTGTCGAAGTGGCTCAATTGCTCGCTCTCCAACGAGCCCTTGAAGGAACCGTGCGTGGTGGATTTTCTTGGGAATGTGTTTAACAAGGAGCCTCTTGTGGAGGCCTTGTTGGGCAAGAAGGTGCCCAAGGCCTTTGGGCACATAAAGGGCTTGAAGGACATGATCACTGTTCATTTTTCCCCAATTCCTGGAACTGAATCCAATCGCCGATCGAGTGCCGCGGGGCCGCGGTTTCAATGCCCTATTTCTGGAGTGGAGTTTAACGGTAAGTGTAAGTTTTTGGCATTGAAAACTTGTGGACATGTACTCAGTGCAAAGGCTTTAAAGGAGGTAAAATCCTCCACTTGCCTTGTTTGTCATGCTGGATTTTCTGAGGCGGATAAGATTGTGATTAACGGAAACGAAGAGGAAGTTGCGGCGTTGAGAGATAGAATGGAGGCCGAGAAGGCGAAAGGGAGAGTGAAAAAGATGAAGAAGACGAAAAATGGGGATGCTACTCTGAATGGAGAAGAGGGTATGGGTTTTGAGGCCTCGCGGTTGAGCGGTACCAAGCATGGCATTGATGTTAAGGCTGTGGAGAAGGCATCAGCAAATGTCGAGGTACATGGGAAGGTTGTGAATGGTGGGGATAATGTGAAGGGTGTGAGTAATGGTGCGGCAAAGAGGTTCAAGGCTGTGGATATAGCCCCGCCTAATGCTACTAAGGAAGTGTATGCGTCTATCTTCACGTCGTCAAGGAAGTCGGAGTTCAAGGAAACATATTCTTGTAGATCTCTCCCACTCGGTAGAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rtf2

Protein Analysis

382

Amino Acids

41.3

Weight (kDa)

9.35

Isoelectric Point (pI)

33.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014164)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58020
fragaria_vesca FvH4_1g01150
malus_domestica MD15G1155100.v1.1
prunus_persica Prupe.7G260500_v2.0.a1
pyrus_communis pycom15g13860
rosa_chinensis RchiOBHm_Chr2g0085941
rosa_laevigata RLG00000015728
rosa_multiflora Rmu_sc0001748.1_g000001 Rmu_ssc0000355.1_g000028
rosa_roxburghii Rroxscaffold_2G00154910
rosa_rugosa Rorug01G0464500 Rorug01G0464500
rosa_samantha Rh2AG013500 Rh2BG014200 Rh2CG014700 Rh2DG016000
rosa_wichuraiana Rw2G001210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 896
AccB1I GGYRCC 2 cut(s) 472, 896
AccB7I CCANNNNNTGG 1 cut(s) 539
AccBSI CCGCTC 1 cut(s) 894
AccII CGCG 4 cut(s) 288, 572, 580, 886
AclWI GGATC 1 cut(s) 329
AcsI RAATTY 1 cut(s) 54
AfaI GTAC 3 cut(s) 657, 898, 954
AfiI CCNNNNNNNGG 2 cut(s) 539, 599
AflIII ACRYGT 1 cut(s) 652
AgsI TTSAA 6 cut(s) 394, 505, 587, 640, 1021, 1102
AjiI CACGTC 1 cut(s) 1080
AjnI CCWGG 1 cut(s) 538
AluBI AGCT 2 cut(s) 115, 242
AluI AGCT 2 cut(s) 115, 242
AlwI GGATC 1 cut(s) 329
AlwNI CAGNNNCTG 1 cut(s) 352
AoxI GGCC 7 cut(s) 267, 276, 453, 480, 575, 789, 879
ApoI RAATTY 1 cut(s) 54
Asp718I GGTACC 1 cut(s) 896
AspS9I GGNCC 3 cut(s) 267, 276, 575
AsuHPI GGTGA 2 cut(s) 98, 145
BaeGI GKGCMC 2 cut(s) 477, 492
BanI GGYRCC 2 cut(s) 472, 896
BanII GRGCYC 1 cut(s) 390
BbsI GAAGAC 1 cut(s) 833
BccI CCATC 2 cut(s) 148, 254
BciT130I CCWGG 1 cut(s) 540
BclI TGATCA 1 cut(s) 513
BfaI CTAG 2 cut(s) 77, 1144
BglI GCCNNNNNGGC 2 cut(s) 275, 797
BglII AGATCT 1 cut(s) 1121
BisI GCNGC 5 cut(s) 256, 570, 578, 768, 1008
BlsI GCNGC 5 cut(s) 257, 571, 579, 769, 1009
Bme1390I CCNGG 1 cut(s) 540
BmgBI CACGTC 1 cut(s) 1080
BmgT120I GGNCC 3 cut(s) 267, 276, 575
BmiI GGNNCC 7 cut(s) 268, 277, 399, 441, 474, 576, 898
BmrFI CCNGG 1 cut(s) 540
BmsI GCATC 3 cut(s) 13, 832, 944
BpiI GAAGAC 1 cut(s) 833
BpmI CTGGAG 2 cut(s) 27, 621
BpuEI CTTGAG 2 cut(s) 95, 284
BsaAI YACGTR 1 cut(s) 233
BsaJI CCNNGG 4 cut(s) 270, 477, 570, 578
BsaXI ACNNNNNCTCC 2 cut(s) 443, 473
Bsc4I CCNNNNNNNGG 2 cut(s) 539, 599
BseBI CCWGG 1 cut(s) 540
BseDI CCNNGG 4 cut(s) 270, 477, 570, 578
BseGI GGATG 2 cut(s) 4, 847
BseLI CCNNNNNNNGG 2 cut(s) 539, 599
BseMII CTCAG 4 cut(s) 101, 303, 673, 714
BseSI GKGCMC 2 cut(s) 477, 492
Bsh1236I CGCG 4 cut(s) 288, 572, 580, 886
Bsh1285I CGRYCG 1 cut(s) 563
BshFI GGCC 7 cut(s) 269, 278, 455, 482, 577, 791, 881
BshNI GGYRCC 2 cut(s) 472, 896
BsiEI CGRYCG 1 cut(s) 563
BslFI GGGAC 1 cut(s) 268
BslI CCNNNNNNNGG 2 cut(s) 539, 599
BsmFI GGGAC 1 cut(s) 268
BsnI GGCC 7 cut(s) 269, 278, 455, 482, 577, 791, 881
Bsp1286I GDGCHC 3 cut(s) 390, 477, 492
Bsp143I GATC 4 cut(s) 334, 513, 560, 1121
BspANI GGCC 7 cut(s) 269, 278, 455, 482, 577, 791, 881
BspCNI CTCAG 4 cut(s) 100, 304, 672, 715
BspFNI CGCG 4 cut(s) 288, 572, 580, 886
BspLI GGNNCC 7 cut(s) 268, 277, 399, 441, 474, 576, 898
BspPI GGATC 1 cut(s) 329
BspT107I GGYRCC 2 cut(s) 472, 896
BsrBI CCGCTC 1 cut(s) 894
BssECI CCNNGG 4 cut(s) 270, 477, 570, 578
BssMI GATC 4 cut(s) 334, 513, 560, 1121
BssT1I CCWWGG 1 cut(s) 477
Bst2UI CCWGG 1 cut(s) 540
Bst4CI ACNGT 4 cut(s) 293, 402, 520, 617
Bst6I CTCTTC 2 cut(s) 750, 855
BstBAI YACGTR 1 cut(s) 233
BstC8I GCNNGC 2 cut(s) 244, 374
BstDEI CTNAG 5 cut(s) 87, 312, 659, 723, 1053
BstDSI CCRYGG 3 cut(s) 270, 570, 578
BstF5I GGATG 2 cut(s) 4, 847
BstFNI CGCG 4 cut(s) 288, 572, 580, 886
BstKTI GATC 4 cut(s) 337, 516, 563, 1124
BstMBI GATC 4 cut(s) 334, 513, 560, 1121
BstMCI CGRYCG 1 cut(s) 563
BstMWI GCNNNNNNNGC 4 cut(s) 252, 261, 275, 797
BstNI CCWGG 1 cut(s) 540
BstNSI RCATGY 1 cut(s) 656
BstSCI CCNGG 1 cut(s) 538
BstSLI GKGCMC 2 cut(s) 477, 492
BstSNI TACGTA 1 cut(s) 233
BstUI CGCG 4 cut(s) 288, 572, 580, 886
BstV2I GAAGAC 1 cut(s) 833
BstX2I RGATCY 1 cut(s) 1121
BstYI RGATCY 1 cut(s) 1121
BsuRI GGCC 7 cut(s) 269, 278, 455, 482, 577, 791, 881
BtgI CCRYGG 3 cut(s) 270, 570, 578
BtgZI GCGATG 2 cut(s) 126, 273
BtrI CACGTC 1 cut(s) 1080
BtsCI GGATG 2 cut(s) 4, 847
BtsIMutI CAGTG 2 cut(s) 516, 667
Cac8I GCNNGC 2 cut(s) 244, 374
CaiI CAGNNNCTG 1 cut(s) 352
Cfr13I GGNCC 3 cut(s) 267, 276, 575
Cfr42I CCGCGG 2 cut(s) 573, 581
CseI GACGC 1 cut(s) 1056
Csp6I GTAC 3 cut(s) 656, 897, 953
CspCI CAANNNNNGTGG 2 cut(s) 682, 717
CviAII CATG 5 cut(s) 511, 653, 710, 905, 956
CviQI GTAC 3 cut(s) 656, 897, 953
DdeI CTNAG 5 cut(s) 87, 312, 659, 723, 1053
DpnI GATC 4 cut(s) 336, 515, 562, 1123
DpnII GATC 4 cut(s) 334, 513, 560, 1121
DraI TTTAAA 1 cut(s) 675
Eam1104I CTCTTC 2 cut(s) 750, 855
EarI CTCTTC 2 cut(s) 750, 855
EciI GGCGGA 1 cut(s) 743
Eco105I TACGTA 1 cut(s) 233
Eco130I CCWWGG 1 cut(s) 477
Eco147I AGGCCT 3 cut(s) 455, 482, 881
Eco24I GRGCYC 1 cut(s) 390
EcoRII CCWGG 1 cut(s) 538
EcoT14I CCWWGG 1 cut(s) 477
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 390
ErhI CCWWGG 1 cut(s) 477
FaeI CATG 5 cut(s) 514, 656, 713, 908, 959
FaqI GGGAC 1 cut(s) 268
FatI CATG 5 cut(s) 510, 652, 709, 904, 955
FauI CCCGC 4 cut(s) 257, 293, 565, 1047
FbaI TGATCA 1 cut(s) 513
Fnu4HI GCNGC 5 cut(s) 256, 570, 578, 768, 1008
FokI GGATG 1 cut(s) 854
FriOI GRGCYC 1 cut(s) 390
Fsp4HI GCNGC 5 cut(s) 256, 570, 578, 768, 1008
FspBI CTAG 2 cut(s) 77, 1144
GluI GCNGC 5 cut(s) 256, 570, 578, 768, 1008
GsuI CTGGAG 2 cut(s) 27, 621
HaeIII GGCC 7 cut(s) 269, 278, 455, 482, 577, 791, 881
HgaI GACGC 1 cut(s) 1056
Hin1II CATG 5 cut(s) 514, 656, 713, 908, 959
HinfI GANTC 4 cut(s) 179, 197, 281, 548
HphI GGTGA 2 cut(s) 98, 145
Hpy166II GTNNAC 2 cut(s) 167, 650
Hpy188I TCNGA 5 cut(s) 60, 90, 724, 852, 1096
Hpy188III TCNNGA 4 cut(s) 44, 194, 301, 600
Hpy8I GTNNAC 2 cut(s) 167, 650
Hpy99I CGWCG 1 cut(s) 1084
HpyAV CCTTC 7 cut(s) 388, 463, 499, 790, 925, 955, 982
HpyCH4III ACNGT 4 cut(s) 293, 402, 520, 617
HpyCH4IV ACGT 2 cut(s) 232, 1079
HpyCH4V TGCA 2 cut(s) 4, 665
HpyF10VI GCNNNNNNNGC 4 cut(s) 252, 261, 275, 797
HpyF3I CTNAG 5 cut(s) 87, 312, 659, 723, 1053
HpySE526I ACGT 2 cut(s) 232, 1079
Hsp92II CATG 5 cut(s) 514, 656, 713, 908, 959
KpnI GGTACC 1 cut(s) 900
Ksp22I TGATCA 1 cut(s) 513
KspI CCGCGG 2 cut(s) 573, 581
Kzo9I GATC 4 cut(s) 334, 513, 560, 1121
LmnI GCTCC 1 cut(s) 439
LpnPI CCDG 7 cut(s) 57, 149, 185, 525, 552, 585, 699
LweI GCATC 3 cut(s) 13, 832, 944
MaeI CTAG 2 cut(s) 77, 1144
MaeII ACGT 2 cut(s) 232, 1079
MaeIII GTNAC 2 cut(s) 104, 293
MalI GATC 4 cut(s) 336, 515, 562, 1123
MbiI CCGCTC 1 cut(s) 894
MboI GATC 4 cut(s) 334, 513, 560, 1121
MboII GAAGA 7 cut(s) 22, 328, 767, 835, 838, 872, 1066
MfeI CAATTG 1 cut(s) 367
MflI RGATCY 1 cut(s) 1121
MhlI GDGCHC 3 cut(s) 390, 477, 492
MluCI AATT 5 cut(s) 19, 54, 204, 367, 534
MlyI GAGTC 2 cut(s) 173, 290
MmeI TCCRAC 3 cut(s) 83, 405, 1074
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 5 cut(s) 432, 612, 674, 744, 918
MspA1I CMGCKG 2 cut(s) 572, 580
MspR9I CCNGG 1 cut(s) 540
MunI CAATTG 1 cut(s) 367
MvaI CCWGG 1 cut(s) 540
MvnI CGCG 4 cut(s) 288, 572, 580, 886
MwoI GCNNNNNNNGC 4 cut(s) 252, 261, 275, 797
NdeII GATC 4 cut(s) 334, 513, 560, 1121
NlaIII CATG 5 cut(s) 514, 656, 713, 908, 959
NlaIV GGNNCC 7 cut(s) 268, 277, 399, 441, 474, 576, 898
NmeAIII GCCGAG 2 cut(s) 304, 817
NmuCI GTSAC 1 cut(s) 104
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 656
PceI AGGCCT 3 cut(s) 455, 482, 881
PciI ACATGT 1 cut(s) 652
PfeI GAWTC 2 cut(s) 197, 548
PflMI CCANNNNNTGG 1 cut(s) 539
PfoI TCCNGGA 1 cut(s) 538
PkrI GCNGC 5 cut(s) 257, 571, 579, 769, 1009
Ple19I CGATCG 1 cut(s) 563
PleI GAGTC 2 cut(s) 173, 289
PpsI GAGTC 2 cut(s) 173, 289
Ppu21I YACGTR 1 cut(s) 233
PscI ACATGT 1 cut(s) 652
Psp6I CCWGG 1 cut(s) 538
PspGI CCWGG 1 cut(s) 538
PspN4I GGNNCC 7 cut(s) 268, 277, 399, 441, 474, 576, 898
PspPI GGNCC 3 cut(s) 267, 276, 575
PstNI CAGNNNCTG 1 cut(s) 352
PsuI RGATCY 1 cut(s) 1121
PvuI CGATCG 1 cut(s) 563
RsaI GTAC 3 cut(s) 657, 898, 954
RsaNI GTAC 3 cut(s) 656, 897, 953
SacII CCGCGG 2 cut(s) 573, 581
SaqAI TTAA 5 cut(s) 432, 612, 674, 744, 918
SatI GCNGC 5 cut(s) 256, 570, 578, 768, 1008
Sau3AI GATC 4 cut(s) 334, 513, 560, 1121
Sau96I GGNCC 3 cut(s) 267, 276, 575
SchI GAGTC 2 cut(s) 173, 290
ScrFI CCNGG 1 cut(s) 540
SduI GDGCHC 3 cut(s) 390, 477, 492
SfaNI GCATC 3 cut(s) 13, 832, 944
SfiI GGCCNNNNNGGCC 1 cut(s) 275
Sfr303I CCGCGG 2 cut(s) 573, 581
SgrBI CCGCGG 2 cut(s) 573, 581
SmlI CTYRAG 2 cut(s) 110, 299
SmoI CTYRAG 2 cut(s) 110, 299
SnaBI TACGTA 1 cut(s) 233
Sse9I AATT 5 cut(s) 19, 54, 204, 367, 534
SseBI AGGCCT 3 cut(s) 455, 482, 881
SspMI CTAG 2 cut(s) 77, 1144
StuI AGGCCT 3 cut(s) 455, 482, 881
StyD4I CCNGG 1 cut(s) 538
StyI CCWWGG 1 cut(s) 477
TaaI ACNGT 4 cut(s) 293, 402, 520, 617
TaiI ACGT 2 cut(s) 235, 1082
TaqI TCGA 4 cut(s) 195, 356, 563, 948
TasI AATT 5 cut(s) 19, 54, 204, 367, 534
TatI WGTACW 1 cut(s) 655
TauI GCSGC 5 cut(s) 258, 572, 580, 770, 1010
TfiI GAWTC 2 cut(s) 197, 548
Tru1I TTAA 5 cut(s) 432, 612, 674, 744, 918
Tru9I TTAA 5 cut(s) 432, 612, 674, 744, 918
TscAI CASTG 2 cut(s) 523, 667
TseFI GTSAC 1 cut(s) 104
Tsp45I GTSAC 1 cut(s) 104
TspDTI ATGAA 2 cut(s) 512, 836
TspGWI ACGGA 2 cut(s) 92, 762
TspRI CASTG 2 cut(s) 523, 667
Van91I CCANNNNNTGG 1 cut(s) 539
XapI RAATTY 1 cut(s) 54
XceI RCATGY 1 cut(s) 656
XspI CTAG 2 cut(s) 77, 1144
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.