Rorug01G0464500

Protein RTF2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0014164
Physical Location & Seq
Reverse (-)
55700395 .. 55701980
1586 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0464500.1

Sequence Viewer

Length: 885 bp
ATGTTTCAGTCATTCAAGAAACTAAGAACACAAAATGTAAATATGGCCAATATGCTAGCAAGCTATCCCAACATATCAGAACTCTCATATGGATTAATTACAGTTTCTAGACCAGCTAGGAGGACTAGATTGATCAATGGTGAGGGACATGTTGGGTATGTAGAGATTAAGACCACAAATTGTGTAGTGCATTGCTCCAGTAGTACTAGTGGTAGCTCAAGTAGTAGTACCTCATCAACGGAGGAAGTGGGTTTTGTAGGGAGTGGAAAGTTTGGTATTGATAATAAGGGAGAGTTCAAGTACTTGGTGAGTGAGTATGGATGGAAGGTCAGGAGTTTGTTTAGAAATGGAGATGAGGTAAGGAAGGCAGCTCAAGTTCAAGCTGAAGCATTTCATGAACCTGTGTTTCTCTTCAATGATCTGTTCTTCCAATTCTTCCAGGCTGAAGTGTTATCTGGGCTTGTATATAAACTTAGGAACTCACCCCCAAACAGGTATGCTTGTTTGGTTGCTGAGCCTACTCCCATGGACACTTCCGAGTCACAAGAACTCGTGGGCGTCGTGGATCTCACGGCGTCAAGAGACCAGAATGTACTAGAGCATCTCCCACCTGATGCAGATGAGTTTCTTTATGTGTCCGGCATAGCTGTTCTCAAGAGTTTTAGGAGGAAGAAAGTAGCCACTGTTTTACTAAAAGCTTGTGACATGCTCTCAGCTGAATGGGGATTTCAGTATCTTGCTCTCCGGGCTTATGAAGACGATTTTGGTGCCCGGGAGTTGTATGCAAATGCCGGTTACCAGGTTGTCTCCGGTGATCCACCGTGGATGAGTACTTGGATTGGAAGAAAACGCCGTGTTGTTATGATCAAACATATTTCGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rtf2

Protein Analysis

294

Amino Acids

32.93

Weight (kDa)

8.25

Isoelectric Point (pI)

40.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 178 - 266 2.5e-08 Acetyltransferase (GNAT) family
Acetyltransf_7 PF13508 182 - 267 6.9e-06 Acetyltransferase (GNAT) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014164)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58020
fragaria_vesca FvH4_1g01150
malus_domestica MD15G1155100.v1.1
prunus_persica Prupe.7G260500_v2.0.a1
pyrus_communis pycom15g13860
rosa_chinensis RchiOBHm_Chr2g0085941
rosa_laevigata RLG00000015728
rosa_multiflora Rmu_sc0001748.1_g000001 Rmu_ssc0000355.1_g000028
rosa_roxburghii Rroxscaffold_2G00154910
rosa_rugosa Rorug01G0464500 Rorug01G0464500
rosa_samantha Rh2AG013500 Rh2BG014200 Rh2CG014700 Rh2DG016000
rosa_wichuraiana Rw2G001210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 767
AclWI GGATC 2 cut(s) 573, 809
AcoI YGGCCR 1 cut(s) 45
AcuI CTGAAG 2 cut(s) 405, 465
AcyI GRCGYC 2 cut(s) 558, 575
AfaI GTAC 5 cut(s) 205, 229, 302, 594, 832
AfiI CCNNNNNNNGG 1 cut(s) 492
AflIII ACRYGT 1 cut(s) 148
AgsI TTSAA 4 cut(s) 16, 298, 380, 415
AhlI ACTAGT 1 cut(s) 206
AjnI CCWGG 2 cut(s) 438, 798
AjuI GAANNNNNNNTTGG 2 cut(s) 747, 779
AluBI AGCT 8 cut(s) 63, 116, 216, 371, 383, 647, 698, 716
AluI AGCT 8 cut(s) 63, 116, 216, 371, 383, 647, 698, 716
Alw26I GTCTC 2 cut(s) 576, 811
AlwI GGATC 2 cut(s) 573, 809
Ama87I CYCGRG 1 cut(s) 771
AoxI GGCC 1 cut(s) 45
ApeKI GCWGC 1 cut(s) 368
AseI ATTAAT 1 cut(s) 95
Asp700I GAANNNNTTC 1 cut(s) 390
AsuC2I CCSGG 3 cut(s) 746, 772, 773
AsuHPI GGTGA 4 cut(s) 152, 319, 474, 824
AsuNHI GCTAGC 1 cut(s) 55
AvaI CYCGRG 1 cut(s) 771
BaeGI GKGCMC 1 cut(s) 772
BalI TGGCCA 1 cut(s) 47
BanI GGYRCC 1 cut(s) 767
BauI CACGAG 1 cut(s) 551
BbsI GAAGAC 1 cut(s) 762
BbvI GCAGC 1 cut(s) 380
BccI CCATC 1 cut(s) 315
BceAI ACGGC 2 cut(s) 588, 837
BcgI CGANNNNNNTGC 2 cut(s) 749, 783
BciT130I CCWGG 2 cut(s) 440, 800
BclI TGATCA 2 cut(s) 132, 864
BcnI CCSGG 3 cut(s) 746, 772, 773
BcoDI GTCTC 2 cut(s) 576, 811
BcuI ACTAGT 1 cut(s) 206
BfaI CTAG 6 cut(s) 56, 108, 117, 126, 207, 596
BisI GCNGC 1 cut(s) 369
BlpI GCTNAGC 1 cut(s) 513
BlsI GCNGC 1 cut(s) 370
BmcAI AGTACT 3 cut(s) 205, 302, 832
Bme1390I CCNGG 5 cut(s) 440, 746, 772, 773, 800
BmeT110I CYCGRG 1 cut(s) 771
BmiI GGNNCC 1 cut(s) 769
BmrFI CCNGG 5 cut(s) 440, 746, 772, 773, 800
BmsI GCATC 2 cut(s) 604, 610
BmtI GCTAGC 1 cut(s) 59
BpiI GAAGAC 1 cut(s) 762
BpmI CTGGAG 1 cut(s) 181
Bpu1102I GCTNAGC 1 cut(s) 513
BpuEI CTTGAG 3 cut(s) 202, 357, 638
BpuMI CCSGG 3 cut(s) 746, 772, 773
BsaHI GRCGYC 2 cut(s) 558, 575
BsaI GGTCTC 1 cut(s) 576
BsaJI CCNNGG 3 cut(s) 525, 771, 821
BsaWI WCCGGW 1 cut(s) 809
BsaXI ACNNNNNCTCC 2 cut(s) 342, 372
Bsc4I CCNNNNNNNGG 1 cut(s) 492
Bse118I RCCGGY 1 cut(s) 791
Bse1I ACTGG 1 cut(s) 198
Bse3DI GCAATG 1 cut(s) 190
BseBI CCWGG 2 cut(s) 440, 800
BseDI CCNNGG 3 cut(s) 525, 771, 821
BseGI GGATG 2 cut(s) 326, 831
BseLI CCNNNNNNNGG 1 cut(s) 492
BseMI GCAATG 1 cut(s) 190
BseMII CTCAG 2 cut(s) 504, 726
BseNI ACTGG 1 cut(s) 198
BseSI GKGCMC 1 cut(s) 772
BseXI GCAGC 1 cut(s) 380
BshFI GGCC 1 cut(s) 47
BshNI GGYRCC 1 cut(s) 767
BsiHKCI CYCGRG 1 cut(s) 771
BsiSI CCGG 5 cut(s) 639, 745, 772, 792, 810
BslFI GGGAC 1 cut(s) 159
BslI CCNNNNNNNGG 1 cut(s) 492
BsmAI GTCTC 2 cut(s) 576, 811
BsmFI GGGAC 1 cut(s) 159
BsnI GGCC 1 cut(s) 47
Bso31I GGTCTC 1 cut(s) 576
BsoBI CYCGRG 1 cut(s) 771
Bsp1286I GDGCHC 1 cut(s) 772
Bsp143I GATC 5 cut(s) 132, 418, 565, 814, 864
Bsp1720I GCTNAGC 1 cut(s) 513
Bsp19I CCATGG 1 cut(s) 525
BspANI GGCC 1 cut(s) 47
BspCNI CTCAG 2 cut(s) 505, 725
BspHI TCATGA 1 cut(s) 394
BspLI GGNNCC 1 cut(s) 769
BspOI GCTAGC 1 cut(s) 59
BspPI GGATC 2 cut(s) 573, 809
BspT107I GGYRCC 1 cut(s) 767
BspTNI GGTCTC 1 cut(s) 576
BsrDI GCAATG 1 cut(s) 190
BsrFI RCCGGY 1 cut(s) 791
BsrI ACTGG 1 cut(s) 198
BssAI RCCGGY 1 cut(s) 791
BssECI CCNNGG 3 cut(s) 525, 771, 821
BssMI GATC 5 cut(s) 132, 418, 565, 814, 864
BssNI GRCGYC 2 cut(s) 558, 575
BssSI CACGAG 1 cut(s) 551
BssT1I CCWWGG 1 cut(s) 525
Bst2BI CACGAG 1 cut(s) 551
Bst2UI CCWGG 2 cut(s) 440, 800
Bst4CI ACNGT 3 cut(s) 103, 685, 822
Bst6I CTCTTC 1 cut(s) 416
BstACI GRCGYC 2 cut(s) 558, 575
BstC8I GCNNGC 2 cut(s) 57, 61
BstDEI CTNAG 4 cut(s) 23, 473, 513, 712
BstDSI CCRYGG 2 cut(s) 525, 821
BstEII GGTNACC 1 cut(s) 794
BstF5I GGATG 2 cut(s) 326, 831
BstKTI GATC 5 cut(s) 135, 421, 568, 817, 867
BstMAI GTCTC 2 cut(s) 576, 811
BstMBI GATC 5 cut(s) 132, 418, 565, 814, 864
BstMWI GCNNNNNNNGC 1 cut(s) 746
BstNI CCWGG 2 cut(s) 440, 800
BstNSI RCATGY 2 cut(s) 152, 709
BstPI GGTNACC 1 cut(s) 794
BstSCI CCNGG 5 cut(s) 438, 744, 770, 771, 798
BstSLI GKGCMC 1 cut(s) 772
BstV1I GCAGC 1 cut(s) 380
BstV2I GAAGAC 1 cut(s) 762
BstX2I RGATCY 1 cut(s) 565
BstYI RGATCY 1 cut(s) 565
BsuRI GGCC 1 cut(s) 47
BtgI CCRYGG 2 cut(s) 525, 821
BtsCI GGATG 2 cut(s) 326, 831
BtsIMutI CAGTG 1 cut(s) 681
Cac8I GCNNGC 2 cut(s) 57, 61
CciI TCATGA 1 cut(s) 394
Cfr10I RCCGGY 1 cut(s) 791
Cfr9I CCCGGG 1 cut(s) 771
CseI GACGC 2 cut(s) 547, 564
CsiI ACCWGGT 1 cut(s) 798
Csp6I GTAC 5 cut(s) 204, 228, 301, 593, 831
CviAII CATG 4 cut(s) 149, 395, 526, 706
CviQI GTAC 5 cut(s) 204, 228, 301, 593, 831
DdeI CTNAG 4 cut(s) 23, 473, 513, 712
DpnI GATC 5 cut(s) 134, 420, 567, 816, 866
DpnII GATC 5 cut(s) 132, 418, 565, 814, 864
EaeI YGGCCR 1 cut(s) 45
Eam1104I CTCTTC 1 cut(s) 416
EarI CTCTTC 1 cut(s) 416
Eco130I CCWWGG 1 cut(s) 525
Eco31I GGTCTC 1 cut(s) 576
Eco57I CTGAAG 2 cut(s) 405, 465
Eco88I CYCGRG 1 cut(s) 771
Eco91I GGTNACC 1 cut(s) 794
EcoO65I GGTNACC 1 cut(s) 794
EcoRII CCWGG 2 cut(s) 438, 798
EcoT14I CCWWGG 1 cut(s) 525
ErhI CCWWGG 1 cut(s) 525
FaeI CATG 4 cut(s) 152, 398, 529, 709
FaqI GGGAC 1 cut(s) 159
FatI CATG 4 cut(s) 148, 394, 525, 705
FauNDI CATATG 1 cut(s) 88
FbaI TGATCA 2 cut(s) 132, 864
Fnu4HI GCNGC 1 cut(s) 369
FokI GGATG 2 cut(s) 333, 838
Fsp4HI GCNGC 1 cut(s) 369
FspBI CTAG 6 cut(s) 56, 108, 117, 126, 207, 596
GluI GCNGC 1 cut(s) 369
GsuI CTGGAG 1 cut(s) 181
HaeIII GGCC 1 cut(s) 47
HapII CCGG 5 cut(s) 639, 745, 772, 792, 810
HgaI GACGC 2 cut(s) 547, 564
Hin1I GRCGYC 2 cut(s) 558, 575
Hin1II CATG 4 cut(s) 152, 398, 529, 709
HindIII AAGCTT 1 cut(s) 696
HinfI GANTC 1 cut(s) 539
HpaII CCGG 5 cut(s) 639, 745, 772, 792, 810
HphI GGTGA 4 cut(s) 152, 319, 474, 824
Hpy188I TCNGA 2 cut(s) 79, 538
Hpy188III TCNNGA 6 cut(s) 16, 108, 331, 395, 579, 655
Hpy99I CGWCG 1 cut(s) 563
HpyAV CCTTC 2 cut(s) 319, 358
HpyCH4III ACNGT 3 cut(s) 103, 685, 822
HpyCH4V TGCA 3 cut(s) 190, 617, 785
HpyF10VI GCNNNNNNNGC 1 cut(s) 746
HpyF3I CTNAG 4 cut(s) 23, 473, 513, 712
Hsp92I GRCGYC 2 cut(s) 558, 575
Hsp92II CATG 4 cut(s) 152, 398, 529, 709
Ksp22I TGATCA 2 cut(s) 132, 864
Kzo9I GATC 5 cut(s) 132, 418, 565, 814, 864
LmnI GCTCC 1 cut(s) 200
Lsp1109I GCAGC 1 cut(s) 380
LweI GCATC 2 cut(s) 604, 610
MabI ACCWGGT 1 cut(s) 798
MaeI CTAG 6 cut(s) 56, 108, 117, 126, 207, 596
MaeIII GTNAC 3 cut(s) 540, 701, 794
MalI GATC 5 cut(s) 134, 420, 567, 816, 866
MboI GATC 5 cut(s) 132, 418, 565, 814, 864
MboII GAAGA 6 cut(s) 403, 418, 427, 682, 767, 855
MflI RGATCY 1 cut(s) 565
MhlI GDGCHC 1 cut(s) 772
MlsI TGGCCA 1 cut(s) 47
MluCI AATT 3 cut(s) 96, 178, 431
MluNI TGGCCA 1 cut(s) 47
MlyI GAGTC 1 cut(s) 548
MnlI CCTC 6 cut(s) 114, 136, 235, 241, 349, 660
Mox20I TGGCCA 1 cut(s) 47
MroXI GAANNNNTTC 1 cut(s) 390
MscI TGGCCA 1 cut(s) 47
MseI TTAA 2 cut(s) 95, 168
Msp20I TGGCCA 1 cut(s) 47
MspA1I CMGCKG 1 cut(s) 716
MspI CCGG 5 cut(s) 639, 745, 772, 792, 810
MspR9I CCNGG 5 cut(s) 440, 746, 772, 773, 800
MvaI CCWGG 2 cut(s) 440, 800
MwoI GCNNNNNNNGC 1 cut(s) 746
NciI CCSGG 3 cut(s) 746, 772, 773
NcoI CCATGG 1 cut(s) 525
NdeI CATATG 1 cut(s) 88
NdeII GATC 5 cut(s) 132, 418, 565, 814, 864
NheI GCTAGC 1 cut(s) 55
NlaIII CATG 4 cut(s) 152, 398, 529, 709
NlaIV GGNNCC 1 cut(s) 769
NmuCI GTSAC 2 cut(s) 540, 701
NspI RCATGY 2 cut(s) 152, 709
PagI TCATGA 1 cut(s) 394
PciI ACATGT 1 cut(s) 148
PcsI WCGNNNNNNNCGW 1 cut(s) 558
PdmI GAANNNNTTC 1 cut(s) 390
PkrI GCNGC 1 cut(s) 370
PleI GAGTC 1 cut(s) 547
PpsI GAGTC 1 cut(s) 547
PscI ACATGT 1 cut(s) 148
PshBI ATTAAT 1 cut(s) 95
Psp6I CCWGG 2 cut(s) 438, 798
PspEI GGTNACC 1 cut(s) 794
PspGI CCWGG 2 cut(s) 438, 798
PspN4I GGNNCC 1 cut(s) 769
PsuI RGATCY 1 cut(s) 565
PvuII CAGCTG 1 cut(s) 716
RsaI GTAC 5 cut(s) 205, 229, 302, 594, 832
RsaNI GTAC 5 cut(s) 204, 228, 301, 593, 831
SaqAI TTAA 2 cut(s) 95, 168
SatI GCNGC 1 cut(s) 369
Sau3AI GATC 5 cut(s) 132, 418, 565, 814, 864
ScaI AGTACT 3 cut(s) 205, 302, 832
SchI GAGTC 1 cut(s) 548
ScrFI CCNGG 5 cut(s) 440, 746, 772, 773, 800
SduI GDGCHC 1 cut(s) 772
SexAI ACCWGGT 1 cut(s) 798
SfaNI GCATC 2 cut(s) 604, 610
SmaI CCCGGG 1 cut(s) 773
SmlI CTYRAG 3 cut(s) 217, 372, 653
SmoI CTYRAG 3 cut(s) 217, 372, 653
SpeI ACTAGT 1 cut(s) 206
Sse9I AATT 3 cut(s) 96, 178, 431
SspMI CTAG 6 cut(s) 56, 108, 117, 126, 207, 596
StyD4I CCNGG 5 cut(s) 438, 744, 770, 771, 798
StyI CCWWGG 1 cut(s) 525
TaaI ACNGT 3 cut(s) 103, 685, 822
TaqI TCGA 1 cut(s) 878
TasI AATT 3 cut(s) 96, 178, 431
TatI WGTACW 4 cut(s) 203, 300, 592, 830
Tru1I TTAA 2 cut(s) 95, 168
Tru9I TTAA 2 cut(s) 95, 168
TscAI CASTG 1 cut(s) 688
TseFI GTSAC 2 cut(s) 540, 701
TseI GCWGC 1 cut(s) 368
Tsp45I GTSAC 2 cut(s) 540, 701
TspDTI ATGAA 3 cut(s) 383, 411, 768
TspGWI ACGGA 1 cut(s) 254
TspMI CCCGGG 1 cut(s) 771
TspRI CASTG 1 cut(s) 688
VspI ATTAAT 1 cut(s) 95
XbaI TCTAGA 1 cut(s) 107
XceI RCATGY 2 cut(s) 152, 709
XmaI CCCGGG 1 cut(s) 771
XmnI GAANNNNTTC 1 cut(s) 390
XspI CTAG 6 cut(s) 56, 108, 117, 126, 207, 596
ZrmI AGTACT 3 cut(s) 205, 302, 832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.