Rmu_sc0001748.1_g000001

Protein RTF2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001748.1
OG0014164
Physical Location & Seq
Reverse (-)
2 .. 441
440 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001748.1_g000001.1.cds

Sequence Viewer

Length: 440 bp
atgcattccaagccccaaactttccaaatcttcctcgaatccccacaactccaaatcccaacccaaaccctaaccctatccccaattcaaaccccaactctccaccacctcaagctttctcttttctcccaaacccttccctccctctacttcaccctcaatggaaagcccttattcgactccaccccgcttctcagttccgaaatttctcccctttcgaccctaattttgcaattcagagctcccggcggaggcggcgatggcggcgccaccggggccgagtcgagggattgctatctcaacatgtacgccgagaaaaagcctgataaggtcgacccgtacgagcagagactctccaaatttctgaactgcgcgctttccaatgagccattgaaggatccttgcgttgtggatttgcttgggaatgtgttcaataagga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rtf2

Protein Analysis

146

Amino Acids

16.11

Weight (kDa)

6.26

Isoelectric Point (pI)

44.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014164)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58020
fragaria_vesca FvH4_1g01150
malus_domestica MD15G1155100.v1.1
prunus_persica Prupe.7G260500_v2.0.a1
pyrus_communis pycom15g13860
rosa_chinensis RchiOBHm_Chr2g0085941
rosa_laevigata RLG00000015728
rosa_multiflora Rmu_sc0001748.1_g000001 Rmu_ssc0000355.1_g000028
rosa_roxburghii Rroxscaffold_2G00154910
rosa_rugosa Rorug01G0464500 Rorug01G0464500
rosa_samantha Rh2AG013500 Rh2BG014200 Rh2CG014700 Rh2DG016000
rosa_wichuraiana Rw2G001210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 266
AccI GTMKAC 1 cut(s) 333
AccII CGCG 1 cut(s) 374
AciI CCGC 4 cut(s) 188, 249, 255, 264
AclWI GGATC 2 cut(s) 392, 405
AcsI RAATTY 2 cut(s) 204, 359
AcyI GRCGYC 1 cut(s) 267
AfaI GTAC 2 cut(s) 308, 341
AfiI CCNNNNNNNGG 2 cut(s) 251, 285
AflIII ACRYGT 1 cut(s) 303
AgsI TTSAA 3 cut(s) 89, 394, 433
AluBI AGCT 2 cut(s) 115, 242
AluI AGCT 2 cut(s) 115, 242
Alw21I GWGCWC 1 cut(s) 244
Alw26I GTCTC 1 cut(s) 343
AlwI GGATC 2 cut(s) 392, 405
AoxI GGCC 1 cut(s) 276
ApoI RAATTY 2 cut(s) 204, 359
ArsI GACNNNNNNTTYG 2 cut(s) 211, 243
Asp700I GAANNNNTTC 1 cut(s) 428
AspLEI GCGC 3 cut(s) 269, 374, 376
AspS9I GGNCC 1 cut(s) 276
AsuC2I CCSGG 2 cut(s) 246, 274
AsuHPI GGTGA 1 cut(s) 145
BamHI GGATCC 1 cut(s) 397
BanI GGYRCC 1 cut(s) 266
BanII GRGCYC 1 cut(s) 244
Bbv12I GWGCWC 1 cut(s) 244
BccI CCATC 1 cut(s) 254
BcnI CCSGG 2 cut(s) 246, 274
BcoDI GTCTC 1 cut(s) 343
BfoI RGCGCY 1 cut(s) 270
BglI GCCNNNNNGGC 1 cut(s) 275
BisI GCNGC 2 cut(s) 256, 265
BlsI GCNGC 2 cut(s) 257, 266
Bme1390I CCNGG 2 cut(s) 246, 274
BmgT120I GGNCC 1 cut(s) 276
BmiI GGNNCC 3 cut(s) 268, 277, 399
BmrFI CCNGG 2 cut(s) 246, 274
BpuEI CTTGAG 1 cut(s) 95
BpuMI CCSGG 2 cut(s) 246, 274
BsaBI GATNNNNATC 1 cut(s) 294
BsaHI GRCGYC 1 cut(s) 267
BsaJI CCNNGG 1 cut(s) 273
Bsc4I CCNNNNNNNGG 2 cut(s) 251, 285
Bse8I GATNNNNATC 1 cut(s) 294
BseDI CCNNGG 1 cut(s) 273
BseJI GATNNNNATC 1 cut(s) 294
BseLI CCNNNNNNNGG 2 cut(s) 251, 285
BseMII CTCAG 1 cut(s) 208
BsePI GCGCGC 1 cut(s) 372
Bsh1236I CGCG 1 cut(s) 374
BshFI GGCC 1 cut(s) 278
BshNI GGYRCC 1 cut(s) 266
BsiHKAI GWGCWC 1 cut(s) 244
BsiSI CCGG 2 cut(s) 246, 273
BsiWI CGTACG 1 cut(s) 339
BslI CCNNNNNNNGG 2 cut(s) 251, 285
BsmAI GTCTC 1 cut(s) 343
BsmI GAATGC 1 cut(s) 4
BsnI GGCC 1 cut(s) 278
Bsp1286I GDGCHC 1 cut(s) 244
Bsp143I GATC 1 cut(s) 397
BspACI CCGC 4 cut(s) 188, 249, 255, 264
BspANI GGCC 1 cut(s) 278
BspCNI CTCAG 1 cut(s) 207
BspFNI CGCG 1 cut(s) 374
BspLI GGNNCC 3 cut(s) 268, 277, 399
BspPI GGATC 2 cut(s) 392, 405
BspT107I GGYRCC 1 cut(s) 266
BssECI CCNNGG 1 cut(s) 273
BssHII GCGCGC 1 cut(s) 372
BssMI GATC 1 cut(s) 397
BssNI GRCGYC 1 cut(s) 267
BstACI GRCGYC 1 cut(s) 267
BstC8I GCNNGC 1 cut(s) 374
BstDEI CTNAG 1 cut(s) 194
BstFNI CGCG 1 cut(s) 374
BstH2I RGCGCY 1 cut(s) 270
BstHHI GCGC 3 cut(s) 269, 374, 376
BstKTI GATC 1 cut(s) 400
BstMAI GTCTC 1 cut(s) 343
BstMBI GATC 1 cut(s) 397
BstMWI GCNNNNNNNGC 5 cut(s) 10, 255, 261, 264, 275
BstNSI RCATGY 1 cut(s) 307
BstSCI CCNGG 2 cut(s) 244, 272
BstUI CGCG 1 cut(s) 374
BstX2I RGATCY 1 cut(s) 397
BstYI RGATCY 1 cut(s) 397
BsuRI GGCC 1 cut(s) 278
BtgZI GCGATG 1 cut(s) 273
Cac8I GCNNGC 1 cut(s) 374
CfoI GCGC 3 cut(s) 269, 374, 376
Cfr13I GGNCC 1 cut(s) 276
Csp6I GTAC 2 cut(s) 307, 340
CviAII CATG 1 cut(s) 304
CviJI RGCY 7 cut(s) 13, 115, 169, 242, 278, 322, 388
CviKI_1 RGCY 7 cut(s) 13, 115, 169, 242, 278, 322, 388
CviQI GTAC 2 cut(s) 307, 340
DdeI CTNAG 1 cut(s) 194
DinI GGCGCC 1 cut(s) 268
DpnI GATC 1 cut(s) 399
DpnII GATC 1 cut(s) 397
EciI GGCGGA 1 cut(s) 264
Ecl136II GAGCTC 1 cut(s) 242
Eco24I GRGCYC 1 cut(s) 244
Eco53kI GAGCTC 1 cut(s) 242
EcoICRI GAGCTC 1 cut(s) 242
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 244
EgeI GGCGCC 1 cut(s) 268
EheI GGCGCC 1 cut(s) 268
FaeI CATG 1 cut(s) 307
FaiI YATR 1 cut(s) 305
FatI CATG 1 cut(s) 303
FauI CCCGC 1 cut(s) 195
FblI GTMKAC 1 cut(s) 333
Fnu4HI GCNGC 2 cut(s) 256, 265
FriOI GRGCYC 1 cut(s) 244
Fsp4HI GCNGC 2 cut(s) 256, 265
GlaI GCGC 3 cut(s) 268, 373, 375
GluI GCNGC 2 cut(s) 256, 265
HaeII RGCGCY 1 cut(s) 270
HaeIII GGCC 1 cut(s) 278
HapII CCGG 2 cut(s) 246, 273
HhaI GCGC 3 cut(s) 269, 374, 376
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 1 cut(s) 307
Hin6I GCGC 3 cut(s) 267, 372, 374
HinP1I GCGC 3 cut(s) 267, 372, 374
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HindIII AAGCTT 1 cut(s) 113
HinfI GANTC 4 cut(s) 38, 179, 281, 351
HpaII CCGG 2 cut(s) 246, 273
HphI GGTGA 1 cut(s) 145
Hpy166II GTNNAC 1 cut(s) 334
Hpy188I TCNGA 3 cut(s) 202, 239, 366
Hpy8I GTNNAC 1 cut(s) 334
HpyAV CCTTC 2 cut(s) 146, 388
HpyCH4V TGCA 2 cut(s) 4, 232
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 255, 261, 264, 275
HpyF3I CTNAG 1 cut(s) 194
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 1 cut(s) 307
HspAI GCGC 3 cut(s) 267, 372, 374
KasI GGCGCC 1 cut(s) 266
Kzo9I GATC 1 cut(s) 397
LmnI GCTCC 1 cut(s) 247
LpnPI CCDG 3 cut(s) 259, 286, 336
MalI GATC 1 cut(s) 399
MboI GATC 1 cut(s) 397
MboII GAAGA 1 cut(s) 22
MflI RGATCY 1 cut(s) 397
MhlI GDGCHC 1 cut(s) 244
MluCI AATT 5 cut(s) 84, 204, 225, 233, 359
Mly113I GGCGCC 1 cut(s) 267
MlyI GAGTC 3 cut(s) 173, 290, 345
MnlI CCTC 7 cut(s) 44, 119, 151, 155, 167, 245, 279
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 428
MspI CCGG 2 cut(s) 246, 273
MspR9I CCNGG 2 cut(s) 246, 274
Mva1269I GAATGC 1 cut(s) 4
MvnI CGCG 1 cut(s) 374
MwoI GCNNNNNNNGC 5 cut(s) 10, 255, 261, 264, 275
NarI GGCGCC 1 cut(s) 267
NciI CCSGG 2 cut(s) 246, 274
NdeII GATC 1 cut(s) 397
NlaIII CATG 1 cut(s) 307
NlaIV GGNNCC 3 cut(s) 268, 277, 399
NmeAIII GCCGAG 2 cut(s) 304, 337
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 307
PauI GCGCGC 1 cut(s) 372
PciI ACATGT 1 cut(s) 303
PcsI WCGNNNNNNNCGW 1 cut(s) 339
PctI GAATGC 1 cut(s) 4
PdmI GAANNNNTTC 1 cut(s) 428
PfeI GAWTC 1 cut(s) 38
Pfl23II CGTACG 1 cut(s) 339
PkrI GCNGC 2 cut(s) 257, 266
PleI GAGTC 3 cut(s) 173, 289, 345
PluTI GGCGCC 1 cut(s) 270
PpsI GAGTC 3 cut(s) 173, 289, 345
PscI ACATGT 1 cut(s) 303
Psp124BI GAGCTC 1 cut(s) 244
PspLI CGTACG 1 cut(s) 339
PspN4I GGNNCC 3 cut(s) 268, 277, 399
PspPI GGNCC 1 cut(s) 276
PsuI RGATCY 1 cut(s) 397
PteI GCGCGC 1 cut(s) 372
RsaI GTAC 2 cut(s) 308, 341
RsaNI GTAC 2 cut(s) 307, 340
SacI GAGCTC 1 cut(s) 244
SalI GTCGAC 1 cut(s) 332
SatI GCNGC 2 cut(s) 256, 265
Sau3AI GATC 1 cut(s) 397
Sau96I GGNCC 1 cut(s) 276
SchI GAGTC 3 cut(s) 173, 290, 345
ScrFI CCNGG 2 cut(s) 246, 274
SduI GDGCHC 1 cut(s) 244
SetI ASST 4 cut(s) 111, 117, 244, 333
SfoI GGCGCC 1 cut(s) 268
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 5 cut(s) 84, 204, 225, 233, 359
SsiI CCGC 4 cut(s) 188, 249, 255, 264
SspDI GGCGCC 1 cut(s) 266
SstI GAGCTC 1 cut(s) 244
StyD4I CCNGG 2 cut(s) 244, 272
TaqI TCGA 5 cut(s) 36, 177, 218, 284, 333
TasI AATT 5 cut(s) 84, 204, 225, 233, 359
TauI GCSGC 2 cut(s) 258, 267
TfiI GAWTC 1 cut(s) 38
XapI RAATTY 2 cut(s) 204, 359
XceI RCATGY 1 cut(s) 307
XmiI GTMKAC 1 cut(s) 333
XmnI GAANNNNTTC 1 cut(s) 428
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.