FvH4_1g01240

glycerophosphoryl diester phosphodiesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0013180
Physical Location & Seq
Reverse (-)
625041 .. 628831
3791 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g01240.t1

Sequence Viewer

Length: 2331 bp
ATGTTAGAATCCTCCGGAAAATCAGGAGATATGATGAGAAGTTTGCTTCTCATCTCCCTGTTGATCCATTCGGCATTAGGCCAGAAAGGAGGGCCAGAGCCTCCAAAAACCAAATGGCTGACGTTAAATGGTGATCAGCCCCTGGTTGTAGCTCGTGGAGGGTACTCGGGTCTCTTTCCAGAATCGACCGAGTATGCTAACACGATGGCCAAGGACCTGAGTACGAATGGCGCAGCTAACTTGTGCAGTCTGCAGTTAACGAAAGATAGCAAGGGACTATGCCTGTCTAACATTCTGTTGGATAATGCAACATCGATAGCTGCCATACACCCTAAACGCAGTAGCACTTACACAGTTAATGGGAAGGAACTCAGTGGGTGGTTCGCTTTAGATTTCAATGCAAAGGAGCTAAACAAAGTGCAAGTGATGCAGAGCAACCCTGCCAGACCAGATCAATTTGATGACCTTTTCCCTATATCGACGGTTGAAGATGTTTTAAATATGGAACCAGAACAGTTTTGGTTGCATGTTCCGTACGATGCATTTTATAACGAGCACAAAATCAGTCCAGCAGCATATGTACAAAACTTTATCAGTGGATGGAGAGGCAACACAAATGTCAATTTCATCTCATCTCCTGAGATTGGTTTCTTGAAAACAATAGGTGGGAAGGTGGACAAAACCAAGACCAAGCTCATTTTTGAGTTCCTAAGCCCCAATGAGACTGAACCAACAACCAGGCAAAACTACGGTGCATTGCTCAAGAATCTTGGAATGATCAAGTCACTTGCAGCTGGGATCCTTGTTCCAAAAGAATTCATATATCCGATTACCTCAAATAATTACTTGGATGCTCCCACTACTCTGGTGGCAGATGCTCACAAACAAGGGCTGGAAGTATACGCGACAGGCTTTGCAAACGACATTCCACTCCCTTACAACTATAGTATGGATGCAACAGCAGAAATCCAACAGTTTGTAGATAATAATGATCAGTTTTCTGTTGATGGGGTGCTTACAGAATTCCCAAGCACAGCAACAGAAGCCATAGGATGCTTTTCACATAACAAGGATGGAAAGCCTTACAAAGGAAGTCCATTGATCATAAGTAATAATGGAGCGAGTGGGGACTACCCTGGTTGCACCGACCTTGCTTATCAGCGCGCGATAGATGATGGGGCTGACATAATTGATTGCTCGGTCCAAATGTCAAGTGATGGAGTTGCCTTCTGCTTAGATAGCATAGATCTCAACTCAGGCACCAATGCATTGACTCAATTCATGACCAGGAGTGAGACTGTCCCTGAACTTCAATCTGAAACTGGAGTGTTCTCGCCCCGGCTCACATGGGAAGAGATTCAGTCCTTGAAACCCGAATTGAAAAGCCCCTTTGGAAACAACCAAGGCCTGTATAGAAACCCAGCTAACAAGGATGCAGGAAAACTGGTGACTCTCACTGAATTCCTAGAGTTGGCCAAGAATAAGGCAACTACTGGAATTTTGATCAACATTCGGAATGCGCCTTACCTAGCATCAAAGGCCGGTCTGGACATTGTTGGTACTGTAACCTCTGCCTTGAAAAATGCCACACTCGACCAGCAATCGACTCAAAAGATCATGATCAAATCAGATGACACTTCAGTGCTGTCCAAATTCGCTGATGTGAAAACATACGAAAGAGTGTTTAGCATTGAGGAGAAAATAGGTTCTATACCAAAGGAATCACTCGAAGAGATCAAGAAGTTTGCAGATGGAGTAACTGTCAACAGAGATTCAGTTATTATGGCTAGAAATTTTTTCACCCAATATGAAACTAGCGTCATCAAGGACTTGAAGGCTGCCAATCTTTCGGTGTACATCCATTTCCTGAGAAACGAATTCAGCAGTCTCTGGCTTGATTATCTCTCAGACCCCATAACCGAAATAGCCACATATGCTATGGGATCAAAGGTTAATGGAATTATGACTGATTTCCCACGAACTGCTAGCAAATATATAAGATGTCCATGCACTGATACCACAAACCCCAACCCATATCCGATTTTCCCAGTTGAACCGGGAAATCTCATCAACACCTTGATACCCCCGGAGAAATTGTCACCCCCAGAGGCTCCCCTCCCACCACTTGAAGCTAAAACCGTAGCTGACCCACCACTTCCTCCAGTGGCACCCAAGCCCAACTCAGACTCCGAGTCAGGTTCAAACTCCGGCGACAAGCCTGCCACCGCCCCTGCACCTACCGCAAAATCAAGTGCAATGGCCAATGCAGCAAACTGGGGTCTTTCTTTGCTAGCAATAATGGTGTTCAGCTTATTGTCTATGGGAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0016020 GO:0031224 GO:0031225 GO:0044425 GO:0048046
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GDPD

Protein Analysis

777

Amino Acids

84.36

Weight (kDa)

5.0

Isoelectric Point (pI)

38.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDPD PF03009 373 - 660 1.3e-20 Glycerophosphoryl diester phosphodiesterase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013180)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58050 AT5G58170
fragaria_vesca FvH4_1g01240
malus_domestica MD02G1010300.v1.1 MD15G1155300.v1.1
prunus_persica Prupe.7G259800_v2.0.a1 Prupe.7G259800_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0086011
rosa_laevigata RLG00000015734
rosa_multiflora Rmu_ssc0000355.1_g000023
rosa_roxburghii Rroxscaffold_2G00154850
rosa_rugosa Rorug01G0465000 Rorug01G0465100
rosa_samantha Rh2AG014300 Rh2BG014800 Rh2CG015400 Rh2DG016700
rosa_wichuraiana Rw2G001270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 549
AccB1I GGYRCC 2 cut(s) 1259, 2167
AccI GTMKAC 1 cut(s) 900
AccII CGCG 3 cut(s) 905, 1164, 1166
AccIII TCCGGA 1 cut(s) 14
AciI CCGC 2 cut(s) 2226, 2241
AclWI GGATC 4 cut(s) 58, 793, 806, 1951
AcoI YGGCCR 3 cut(s) 207, 1473, 2259
AcsI RAATTY 7 cut(s) 815, 1022, 1460, 1497, 1652, 1792, 1877
AcuI CTGAAG 1 cut(s) 1623
AfaI GTAC 6 cut(s) 164, 223, 536, 582, 1561, 1856
AfiI CCNNNNNNNGG 3 cut(s) 644, 1088, 1471
AhdI GACNNNNNGTC 1 cut(s) 2191
AjnI CCWGG 4 cut(s) 141, 737, 1135, 1286
AleI CACNNNNGTG 1 cut(s) 1640
Alw21I GWGCWC 1 cut(s) 558
Alw26I GTCTC 4 cut(s) 176, 716, 1289, 1892
AlwI GGATC 4 cut(s) 58, 793, 806, 1951
AlwNI CAGNNNCTG 2 cut(s) 142, 1890
Ama87I CYCGRG 1 cut(s) 166
Aor13HI TCCGGA 1 cut(s) 14
AoxI GGCC 7 cut(s) 79, 92, 207, 1405, 1473, 1539, 2259
ApeKI GCWGC 6 cut(s) 233, 320, 572, 791, 1838, 2267
ApoI RAATTY 7 cut(s) 815, 1022, 1460, 1497, 1652, 1792, 1877
Asp700I GAANNNNTTC 1 cut(s) 1356
AspLEI GCGC 4 cut(s) 233, 1164, 1166, 1522
AspS9I GGNCC 3 cut(s) 92, 214, 1201
AsuC2I CCSGG 3 cut(s) 1339, 2058, 2087
AsuHPI GGTGA 4 cut(s) 143, 1459, 1792, 2091
AsuNHI GCTAGC 2 cut(s) 1985, 2290
AvaI CYCGRG 1 cut(s) 166
AvaII GGWCC 2 cut(s) 214, 1201
BaeI ACNNNNGTAYC 2 cut(s) 154, 187
BalI TGGCCA 3 cut(s) 209, 1475, 2261
BamHI GGATCC 1 cut(s) 798
BanI GGYRCC 2 cut(s) 1259, 2167
BauI CACGAG 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 558
BbvI GCAGC 6 cut(s) 245, 307, 584, 803, 1825, 2279
BccI CCATC 7 cut(s) 199, 594, 1001, 1067, 1169, 1211, 1745
BcgI CGANNNNNNTGC 2 cut(s) 2201, 2235
BciT130I CCWGG 4 cut(s) 143, 739, 1137, 1288
BclI TGATCA 6 cut(s) 133, 777, 991, 1101, 1503, 1620
BcnI CCSGG 3 cut(s) 1339, 2058, 2087
BcoDI GTCTC 4 cut(s) 176, 716, 1289, 1892
BfaI CTAG 6 cut(s) 1466, 1529, 1788, 1815, 1986, 2291
BfmI CTRYAG 2 cut(s) 251, 943
BglII AGATCT 1 cut(s) 1246
BisI GCNGC 6 cut(s) 234, 321, 573, 792, 1839, 2268
BlsI GCNGC 6 cut(s) 235, 322, 574, 793, 1840, 2269
Bme1390I CCNGG 7 cut(s) 143, 739, 1137, 1288, 1339, 2058, 2087
Bme18I GGWCC 2 cut(s) 214, 1201
BmeRI GACNNNNNGTC 1 cut(s) 2191
BmeT110I CYCGRG 1 cut(s) 166
BmgT120I GGNCC 3 cut(s) 92, 214, 1201
BmiI GGNNCC 5 cut(s) 507, 800, 1261, 2112, 2169
BmrFI CCNGG 7 cut(s) 143, 739, 1137, 1288, 1339, 2058, 2087
BmrI ACTGGG 2 cut(s) 2042, 2284
BmsI GCATC 8 cut(s) 417, 529, 841, 865, 943, 1043, 1423, 1541
BmtI GCTAGC 2 cut(s) 1989, 2294
BmuI ACTGGG 2 cut(s) 2042, 2284
BpmI CTGGAG 2 cut(s) 1344, 2145
Bpu10I CCTNAGC 1 cut(s) 710
BpuEI CTTGAG 1 cut(s) 746
BpuMI CCSGG 3 cut(s) 1339, 2058, 2087
Bsa29I ATCGAT 1 cut(s) 314
BsaBI GATNNNNATC 1 cut(s) 1619
BsaI GGTCTC 1 cut(s) 176
BsaJI CCNNGG 6 cut(s) 141, 210, 1135, 1337, 1402, 2085
BsaWI WCCGGW 1 cut(s) 14
BsaXI ACNNNNNCTCC 6 cut(s) 1746, 1776, 2081, 2111, 2171, 2201
Bsc4I CCNNNNNNNGG 3 cut(s) 644, 1088, 1471
Bse118I RCCGGY 1 cut(s) 1541
Bse1I ACTGG 6 cut(s) 1327, 1449, 1498, 2048, 2162, 2279
Bse3DI GCAATG 2 cut(s) 755, 2262
Bse8I GATNNNNATC 1 cut(s) 1619
BseAI TCCGGA 1 cut(s) 14
BseBI CCWGG 4 cut(s) 143, 739, 1137, 1288
BseCI ATCGAT 1 cut(s) 314
BseDI CCNNGG 6 cut(s) 141, 210, 1135, 1337, 1402, 2085
BseGI GGATG 7 cut(s) 605, 856, 958, 1058, 1078, 1438, 1857
BseJI GATNNNNATC 1 cut(s) 1619
BseLI CCNNNNNNNGG 3 cut(s) 644, 1088, 1471
BseMI GCAATG 2 cut(s) 755, 2262
BseMII CTCAG 7 cut(s) 209, 385, 630, 1269, 1859, 1920, 2196
BseNI ACTGG 6 cut(s) 1327, 1449, 1498, 2048, 2162, 2279
BsePI GCGCGC 1 cut(s) 1162
BseRI GAGGAG 1 cut(s) 1709
BseXI GCAGC 6 cut(s) 245, 307, 584, 803, 1825, 2279
BseYI CCCAGC 2 cut(s) 794, 1420
BsgI GTGCAG 2 cut(s) 265, 2217
Bsh1236I CGCG 3 cut(s) 905, 1164, 1166
Bsh1285I CGRYCG 1 cut(s) 189
BshFI GGCC 7 cut(s) 81, 94, 209, 1407, 1475, 1541, 2261
BshNI GGYRCC 2 cut(s) 1259, 2167
BshVI ATCGAT 1 cut(s) 314
BsiEI CGRYCG 1 cut(s) 189
BsiHKAI GWGCWC 1 cut(s) 558
BsiHKCI CYCGRG 1 cut(s) 166
BsiSI CCGG 6 cut(s) 15, 1339, 1542, 2057, 2087, 2208
BsiWI CGTACG 1 cut(s) 534
BslFI GGGAC 3 cut(s) 288, 1142, 1286
BslI CCNNNNNNNGG 3 cut(s) 644, 1088, 1471
BsmAI GTCTC 4 cut(s) 176, 716, 1289, 1892
BsmFI GGGAC 3 cut(s) 288, 1142, 1286
BsmI GAATGC 1 cut(s) 1522
BsnI GGCC 7 cut(s) 81, 94, 209, 1407, 1475, 1541, 2261
Bso31I GGTCTC 1 cut(s) 176
BsoBI CYCGRG 1 cut(s) 166
Bsp1286I GDGCHC 1 cut(s) 558
Bsp13I TCCGGA 1 cut(s) 14
Bsp1407I TGTACA 2 cut(s) 580, 1854
BspACI CCGC 2 cut(s) 2226, 2241
BspANI GGCC 7 cut(s) 81, 94, 209, 1407, 1475, 1541, 2261
BspCNI CTCAG 7 cut(s) 210, 384, 631, 1268, 1860, 1919, 2195
BspDI ATCGAT 1 cut(s) 314
BspEI TCCGGA 1 cut(s) 14
BspFNI CGCG 3 cut(s) 905, 1164, 1166
BspHI TCATGA 2 cut(s) 1281, 1617
BspLI GGNNCC 5 cut(s) 507, 800, 1261, 2112, 2169
BspMAI CTGCAG 1 cut(s) 255
BspOI GCTAGC 2 cut(s) 1989, 2294
BspPI GGATC 4 cut(s) 58, 793, 806, 1951
BspT107I GGYRCC 2 cut(s) 1259, 2167
BspTNI GGTCTC 1 cut(s) 176
BsrDI GCAATG 2 cut(s) 755, 2262
BsrFI RCCGGY 1 cut(s) 1541
BsrGI TGTACA 2 cut(s) 580, 1854
BsrI ACTGG 6 cut(s) 1327, 1449, 1498, 2048, 2162, 2279
BssAI RCCGGY 1 cut(s) 1541
BssECI CCNNGG 6 cut(s) 141, 210, 1135, 1337, 1402, 2085
BssHII GCGCGC 1 cut(s) 1162
BssNAI GTATAC 1 cut(s) 901
BssSI CACGAG 1 cut(s) 153
BssT1I CCWWGG 2 cut(s) 210, 1402
Bst1107I GTATAC 1 cut(s) 901
Bst2BI CACGAG 1 cut(s) 153
Bst2UI CCWGG 4 cut(s) 143, 739, 1137, 1288
Bst4CI ACNGT 9 cut(s) 355, 484, 516, 752, 975, 1300, 1564, 1762, 2140
Bst6I CTCTTC 2 cut(s) 1347, 1725
BstAPI GCANNNNNTGC 1 cut(s) 427
BstAUI TGTACA 2 cut(s) 580, 1854
BstC8I GCNNGC 4 cut(s) 1164, 1987, 2220, 2292
BstDEI CTNAG 9 cut(s) 218, 371, 639, 710, 1234, 1255, 1868, 1906, 2182
BstENI CCTNNNNNAGG 1 cut(s) 1086
BstF5I GGATG 7 cut(s) 605, 856, 958, 1058, 1078, 1438, 1857
BstFNI CGCG 3 cut(s) 905, 1164, 1166
BstHHI GCGC 4 cut(s) 233, 1164, 1166, 1522
BstMAI GTCTC 4 cut(s) 176, 716, 1289, 1892
BstMCI CGRYCG 1 cut(s) 189
BstMWI GCNNNNNNNGC 7 cut(s) 427, 1043, 1239, 1538, 1934, 2240, 2267
BstNI CCWGG 4 cut(s) 143, 739, 1137, 1288
BstNSI RCATGY 1 cut(s) 530
BstSCI CCNGG 7 cut(s) 141, 737, 1135, 1286, 1337, 2056, 2085
BstSFI CTRYAG 2 cut(s) 251, 943
BstUI CGCG 3 cut(s) 905, 1164, 1166
BstV1I GCAGC 6 cut(s) 245, 307, 584, 803, 1825, 2279
BstX2I RGATCY 2 cut(s) 798, 1246
BstXI CCANNNNNNTGG 1 cut(s) 865
BstYI RGATCY 2 cut(s) 798, 1246
BstZ17I GTATAC 1 cut(s) 901
Bsu15I ATCGAT 1 cut(s) 314
BsuRI GGCC 7 cut(s) 81, 94, 209, 1407, 1475, 1541, 2261
BsuTUI ATCGAT 1 cut(s) 314
BtsCI GGATG 7 cut(s) 605, 856, 958, 1058, 1078, 1438, 1857
BtsIMutI CAGTG 6 cut(s) 379, 601, 1455, 1647, 2010, 2169
Cac8I GCNNGC 4 cut(s) 1164, 1987, 2220, 2292
CaiI CAGNNNCTG 2 cut(s) 142, 1890
CciI TCATGA 2 cut(s) 1281, 1617
CfoI GCGC 4 cut(s) 233, 1164, 1166, 1522
Cfr10I RCCGGY 1 cut(s) 1541
Cfr13I GGNCC 3 cut(s) 92, 214, 1201
ClaI ATCGAT 1 cut(s) 314
CseI GACGC 1 cut(s) 1807
Csp6I GTAC 6 cut(s) 163, 222, 535, 581, 1560, 1855
CviAII CATG 5 cut(s) 527, 1282, 1347, 1618, 2007
CviQI GTAC 6 cut(s) 163, 222, 535, 581, 1560, 1855
DdeI CTNAG 9 cut(s) 218, 371, 639, 710, 1234, 1255, 1868, 1906, 2182
DraI TTTAAA 1 cut(s) 498
DriI GACNNNNNGTC 1 cut(s) 2191
EaeI YGGCCR 3 cut(s) 207, 1473, 2259
Eam1104I CTCTTC 2 cut(s) 1347, 1725
Eam1105I GACNNNNNGTC 1 cut(s) 2191
EarI CTCTTC 2 cut(s) 1347, 1725
Eco130I CCWWGG 2 cut(s) 210, 1402
Eco147I AGGCCT 1 cut(s) 1407
Eco31I GGTCTC 1 cut(s) 176
Eco47I GGWCC 2 cut(s) 214, 1201
Eco57I CTGAAG 1 cut(s) 1623
Eco88I CYCGRG 1 cut(s) 166
EcoNI CCTNNNNNAGG 1 cut(s) 1086
EcoO109I RGGNCCY 1 cut(s) 214
EcoRI GAATTC 4 cut(s) 815, 1022, 1460, 1877
EcoRII CCWGG 4 cut(s) 141, 737, 1135, 1286
EcoT14I CCWWGG 2 cut(s) 210, 1402
EcoT22I ATGCAT 2 cut(s) 544, 1270
ErhI CCWWGG 2 cut(s) 210, 1402
FaeI CATG 5 cut(s) 530, 1285, 1350, 1621, 2010
FaqI GGGAC 3 cut(s) 288, 1142, 1286
FatI CATG 5 cut(s) 526, 1281, 1346, 1617, 2006
FauNDI CATATG 2 cut(s) 577, 1933
FbaI TGATCA 6 cut(s) 133, 777, 991, 1101, 1503, 1620
FblI GTMKAC 1 cut(s) 900
Fnu4HI GCNGC 6 cut(s) 234, 321, 573, 792, 1839, 2268
FokI GGATG 7 cut(s) 612, 863, 965, 1065, 1085, 1445, 1844
Fsp4HI GCNGC 6 cut(s) 234, 321, 573, 792, 1839, 2268
FspBI CTAG 6 cut(s) 1466, 1529, 1788, 1815, 1986, 2291
GlaI GCGC 4 cut(s) 232, 1163, 1165, 1521
GluI GCNGC 6 cut(s) 234, 321, 573, 792, 1839, 2268
GsaI CCCAGC 2 cut(s) 798, 1424
GsuI CTGGAG 2 cut(s) 1344, 2145
HaeIII GGCC 7 cut(s) 81, 94, 209, 1407, 1475, 1541, 2261
HapII CCGG 6 cut(s) 15, 1339, 1542, 2057, 2087, 2208
HgaI GACGC 1 cut(s) 1807
HhaI GCGC 4 cut(s) 233, 1164, 1166, 1522
Hin1II CATG 5 cut(s) 530, 1285, 1350, 1621, 2010
Hin6I GCGC 4 cut(s) 231, 1162, 1164, 1520
HinP1I GCGC 4 cut(s) 231, 1162, 1164, 1520
HincII GTYRAC 2 cut(s) 258, 1765
HindII GTYRAC 2 cut(s) 258, 1765
HpaI GTTAAC 1 cut(s) 258
HpaII CCGG 6 cut(s) 15, 1339, 1542, 2057, 2087, 2208
HphI GGTGA 4 cut(s) 143, 1459, 1792, 2091
Hpy166II GTNNAC 5 cut(s) 258, 676, 901, 1765, 1855
Hpy188I TCNGA 8 cut(s) 828, 1318, 1515, 1630, 1909, 2040, 2185, 2191
Hpy8I GTNNAC 5 cut(s) 258, 676, 901, 1765, 1855
Hpy99I CGWCG 1 cut(s) 484
HpyAV CCTTC 4 cut(s) 358, 664, 1237, 1828
HpyCH4III ACNGT 9 cut(s) 355, 484, 516, 752, 975, 1300, 1564, 1762, 2140
HpyCH4IV ACGT 1 cut(s) 122
HpyF10VI GCNNNNNNNGC 7 cut(s) 427, 1043, 1239, 1538, 1934, 2240, 2267
HpyF3I CTNAG 9 cut(s) 218, 371, 639, 710, 1234, 1255, 1868, 1906, 2182
HpySE526I ACGT 1 cut(s) 122
Hsp92II CATG 5 cut(s) 530, 1285, 1350, 1621, 2010
HspAI GCGC 4 cut(s) 231, 1162, 1164, 1520
Kpn2I TCCGGA 1 cut(s) 14
Ksp22I TGATCA 6 cut(s) 133, 777, 991, 1101, 1503, 1620
KspAI GTTAAC 1 cut(s) 258
LmnI GCTCC 4 cut(s) 406, 859, 1118, 2116
Lsp1109I GCAGC 6 cut(s) 245, 307, 584, 803, 1825, 2279
LweI GCATC 8 cut(s) 417, 529, 841, 865, 943, 1043, 1423, 1541
MaeI CTAG 6 cut(s) 1466, 1529, 1788, 1815, 1986, 2291
MaeII ACGT 1 cut(s) 122
MaeIII GTNAC 5 cut(s) 783, 1447, 1564, 1756, 2097
MboII GAAGA 3 cut(s) 500, 1364, 1742
MflI RGATCY 2 cut(s) 798, 1246
MhlI GDGCHC 1 cut(s) 558
MlsI TGGCCA 3 cut(s) 209, 1475, 2261
MluNI TGGCCA 3 cut(s) 209, 1475, 2261
MlyI GAGTC 5 cut(s) 1267, 1444, 1600, 2180, 2201
MmeI TCCRAC 2 cut(s) 279, 994
Mox20I TGGCCA 3 cut(s) 209, 1475, 2261
Mph1103I ATGCAT 2 cut(s) 544, 1270
MroI TCCGGA 1 cut(s) 14
MroXI GAANNNNTTC 1 cut(s) 1356
MscI TGGCCA 3 cut(s) 209, 1475, 2261
MseI TTAA 6 cut(s) 125, 257, 357, 497, 1953, 2329
MslI CAYNNNNRTG 1 cut(s) 1640
Msp20I TGGCCA 3 cut(s) 209, 1475, 2261
MspA1I CMGCKG 1 cut(s) 794
MspI CCGG 6 cut(s) 15, 1339, 1542, 2057, 2087, 2208
MspR9I CCNGG 7 cut(s) 143, 739, 1137, 1288, 1339, 2058, 2087
Mva1269I GAATGC 1 cut(s) 1522
MvaI CCWGG 4 cut(s) 143, 739, 1137, 1288
MvnI CGCG 3 cut(s) 905, 1164, 1166
MwoI GCNNNNNNNGC 7 cut(s) 427, 1043, 1239, 1538, 1934, 2240, 2267
NciI CCSGG 3 cut(s) 1339, 2058, 2087
NdeI CATATG 2 cut(s) 577, 1933
NheI GCTAGC 2 cut(s) 1985, 2290
NlaIII CATG 5 cut(s) 530, 1285, 1350, 1621, 2010
NlaIV GGNNCC 5 cut(s) 507, 800, 1261, 2112, 2169
NmuCI GTSAC 3 cut(s) 783, 1447, 2097
NsiI ATGCAT 2 cut(s) 544, 1270
NspI RCATGY 1 cut(s) 530
OliI CACNNNNGTG 1 cut(s) 1640
PagI TCATGA 2 cut(s) 1281, 1617
PauI GCGCGC 1 cut(s) 1162
PceI AGGCCT 1 cut(s) 1407
PctI GAATGC 1 cut(s) 1522
PdmI GAANNNNTTC 1 cut(s) 1356
PfeI GAWTC 6 cut(s) 8, 182, 766, 1357, 1721, 1772
Pfl23II CGTACG 1 cut(s) 534
PkrI GCNGC 6 cut(s) 235, 322, 574, 793, 1840, 2269
PleI GAGTC 5 cut(s) 1267, 1444, 1600, 2180, 2200
PpsI GAGTC 5 cut(s) 1267, 1444, 1600, 2180, 2200
PpuMI RGGWCCY 1 cut(s) 214
PsiI TTATAA 1 cut(s) 549
Psp5II RGGWCCY 1 cut(s) 214
Psp6I CCWGG 4 cut(s) 141, 737, 1135, 1286
PspFI CCCAGC 2 cut(s) 794, 1420
PspGI CCWGG 4 cut(s) 141, 737, 1135, 1286
PspLI CGTACG 1 cut(s) 534
PspN4I GGNNCC 5 cut(s) 507, 800, 1261, 2112, 2169
PspPI GGNCC 3 cut(s) 92, 214, 1201
PspPPI RGGWCCY 1 cut(s) 214
PstI CTGCAG 1 cut(s) 255
PstNI CAGNNNCTG 2 cut(s) 142, 1890
PsuI RGATCY 2 cut(s) 798, 1246
PteI GCGCGC 1 cut(s) 1162
PvuII CAGCTG 1 cut(s) 794
RsaI GTAC 6 cut(s) 164, 223, 536, 582, 1561, 1856
RsaNI GTAC 6 cut(s) 163, 222, 535, 581, 1560, 1855
RseI CAYNNNNRTG 1 cut(s) 1640
SaqAI TTAA 6 cut(s) 125, 257, 357, 497, 1953, 2329
SatI GCNGC 6 cut(s) 234, 321, 573, 792, 1839, 2268
Sau96I GGNCC 3 cut(s) 92, 214, 1201
SchI GAGTC 5 cut(s) 1267, 1444, 1600, 2180, 2201
ScrFI CCNGG 7 cut(s) 143, 739, 1137, 1288, 1339, 2058, 2087
SduI GDGCHC 1 cut(s) 558
SfaNI GCATC 8 cut(s) 417, 529, 841, 865, 943, 1043, 1423, 1541
SfcI CTRYAG 2 cut(s) 251, 943
SinI GGWCC 2 cut(s) 214, 1201
SmiMI CAYNNNNRTG 1 cut(s) 1640
SmlI CTYRAG 1 cut(s) 761
SmoI CTYRAG 1 cut(s) 761
SseBI AGGCCT 1 cut(s) 1407
SsiI CCGC 2 cut(s) 2226, 2241
SspMI CTAG 6 cut(s) 1466, 1529, 1788, 1815, 1986, 2291
StuI AGGCCT 1 cut(s) 1407
StyD4I CCNGG 7 cut(s) 141, 737, 1135, 1286, 1337, 2056, 2085
StyI CCWWGG 2 cut(s) 210, 1402
TaaI ACNGT 9 cut(s) 355, 484, 516, 752, 975, 1300, 1564, 1762, 2140
TaiI ACGT 1 cut(s) 125
TaqI TCGA 6 cut(s) 185, 314, 479, 1593, 1604, 1728
TaqII GACCGA 2 cut(s) 203, 1189
TatI WGTACW 2 cut(s) 580, 1854
TfiI GAWTC 6 cut(s) 8, 182, 766, 1357, 1721, 1772
Tru1I TTAA 6 cut(s) 125, 257, 357, 497, 1953, 2329
Tru9I TTAA 6 cut(s) 125, 257, 357, 497, 1953, 2329
TscAI CASTG 6 cut(s) 379, 601, 1462, 1647, 2017, 2169
TseFI GTSAC 3 cut(s) 783, 1447, 2097
TseI GCWGC 6 cut(s) 233, 320, 572, 791, 1838, 2267
Tsp45I GTSAC 3 cut(s) 783, 1447, 2097
TspDTI ATGAA 4 cut(s) 616, 808, 1270, 1824
TspGWI ACGGA 1 cut(s) 522
TspRI CASTG 6 cut(s) 379, 601, 1462, 1647, 2017, 2169
VpaK11BI GGWCC 2 cut(s) 214, 1201
XagI CCTNNNNNAGG 1 cut(s) 1086
XapI RAATTY 7 cut(s) 815, 1022, 1460, 1497, 1652, 1792, 1877
XceI RCATGY 1 cut(s) 530
XcmI CCANNNNNNNNNTGG 4 cut(s) 111, 516, 865, 1936
XmiI GTMKAC 1 cut(s) 900
XmnI GAANNNNTTC 1 cut(s) 1356
XspI CTAG 6 cut(s) 1466, 1529, 1788, 1815, 1986, 2291
Zsp2I ATGCAT 2 cut(s) 544, 1270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.