Rw2G001270

glycerophosphoryl diester phosphodiesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0013180
Physical Location & Seq
Reverse (-)
1054669 .. 1058369
3701 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G001270.1

Sequence Viewer

Length: 2367 bp
ATGTTAGAATCCTCCGGAAAATCAGGAGAAATGATGAGAGGTTTGCTTCTCATTTCCCTGTTGATCCATTCAGCATTGGCCCAGGATGTAGGGCCGGAGGAGCCTCCTCCATTAGGCCAGAAAGGAGGGCCAGATGAGCCGCCTCAAGGGAAGAAATGGCTGACATTAAATGGTAGAGAGCCCCTGATTGTAGCTCGTGGAGGGCTATCGGGGCTCTTTCCAGAATCGAGCAATTATGCTAATAGTATGGCCAAGTCCCTGAGTTTGATAGGCACAGCTCTCTACTGCAATCTACAATTAACGAAAGATAGCGTGGGAATATGCCTGTCAAACATTCTGCTTGATAATACAACAACAATATCTACGGTACACCCTAATGGCGACAAAACTTACAATGTTAATGGGAAGGAAGTTCATGGGTGGTTCGCTTTAGATTTCACAGCAGATCAGCTGTCAAAGTTGACATTGACTCAAAACATCTTTTCCAGACCGGATCAATTTGACGATGCTTTGCCTATATCGACAGTTGAGGATGTTTTACATAGCAAACCGGACCAGTTTTGGTTGCATGTGCCGTACGATGCATTTTATAACGAACACAAAATCAGTCCAGCGGCATTTGTACAAAGGCAAATGAAAGTTGCAGACATCAATTTCCTTTCATCTCCTGAGATTGGTTTCTTGAAAACTATCGGTGGAAAAGTGGACAAATTGAAGACCAAGCTCATCTTCGAGTTCCTAGGCCCCGATGAGATTGAACCCACAACTAAACAAAAGTACGGTGAATTGCTGAAGAATCTTGGAATGATCAAGTCACTAGCAGCTGGGATCCTTGTTCCAAAAGAATTCATATACCCCGTTACCCCAAATAATTATTTGGATGCTCCCACTACTCTGGTGGCAGATGCTCACAAAGAAGGGGTGGAAGTATATGCTAAAGGCTTTGCAAACGATCAAAATATCCCTTACAACTATAGTATGGATCCAACAGCAGAAATCCAACAGTTCGTAGATAATTCTGATCAATTTTCTGTTGATGGAGTGCTTACAGATTTCCCACCTACGGCATCAGAAGCCATTGCATGCTTTTCGCATAACAAGGATGCCAAGCCTTACAAAGGAAGTCCACTGATCATAAGTAGAAATGGAGCGAGTGGGAACTATCCTGGTTGCACAGACCTTGCTTATCAGAGAGCAGTAGATGATGGCGCTGACATAATCGATTGCTCAGTCCAAATGTCAAGTGATGGAGTTGCCTTCTGCTTAGATTCCATAGACCTCAACTCAGGCACCAATGCATTGATTCAATTTATGACCAAGAGTGAGACTATCCCTGAACTTCAACCTGAAGCAGGAGTCTTCTCGTTCCAGCTCACATGGGAGGAGATTCAGTCCTTGAAACCCCAACTGCAAAGTCCCCACGGAGCCAAGGGAGACTTGTATAGAAACCCAGCTAACAAGGATGCAGGCAAACTGGTGACCCTTAATGAATTCCTAGAGTTCGCCAAGAAAAAGGCAACTACTGGAATTTTGATCGACATTGAGAATGCGCCATACCTAGCATCAAAGGCCGGTCTGGACATTGTTGGTACCGTAATCTCTGCCTTGAAAAATGCCTCACTCGACAAGCAATCGACTCAACAAGTCATGATCAAATCAAATGACACTTCAGTCCTGTCCAAATTCGCTGATGAGAAAACATACAAAAGAGTGTTCAGCATTAAGGAGCAAGTAGGTTCTGCACCAAAGCAATCGATTGACGAGATCAAGAAGTTTGCAGATGCAGTAACTGTCAGCAAAAATTCGGTTATTCAGTCCAACTCTTTCTTCATCTCGGGCGAAACTGGCATCATCAAGGAATTGAAGGCTGCAAATCTTTCAGTGTACATCCATTACCTGAAAAACGAATTCCTCAGTCTCATGTTTGATTATCTCTCAGACCCCATTACCGAAATAGCTACATATGCTCAAGGATTCCATGTTGATGGAATTGTGACTGATTTCCCAGGAACTGCTAGCAAATATATGAAATGTGCATGCACTGATCTTAACCCTCAGGCCAATATCCCATATCCAATTTTGCCGATTGAACCCGGTTCTCTCCTCAGCTTGCTACCCCCTGAGAAAGTGGCACCAGCAGCCGCTCCCCTACCAGCTCTCGACGCTAGTAGCATAGTTGACCCACCACTTCCTCCAGTGGCACCCAAAAAGGAGACCAAGCCCGACTCAGACTCCCCGTCCGGTGACAAGCCTGCTCATGCTCCTGCACCGACCGGAAAATCAGGCGCATTGGCAAATGCAGCAAACTGGGGTGTTTCTTTGGTAGCAATAATGGTGCTTATTAGCTTATTGTCTATGGGAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0016020 GO:0031224 GO:0031225 GO:0044425 GO:0048046
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GDPD

Protein Analysis

788

Amino Acids

85.06

Weight (kDa)

5.05

Isoelectric Point (pI)

37.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDPD PF03009 383 - 671 9e-25 Glycerophosphoryl diester phosphodiesterase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013180)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58050 AT5G58170
fragaria_vesca FvH4_1g01240
malus_domestica MD02G1010300.v1.1 MD15G1155300.v1.1
prunus_persica Prupe.7G259800_v2.0.a1 Prupe.7G259800_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0086011
rosa_laevigata RLG00000015734
rosa_multiflora Rmu_ssc0000355.1_g000023
rosa_roxburghii Rroxscaffold_2G00154850
rosa_rugosa Rorug01G0465000 Rorug01G0465100
rosa_samantha Rh2AG014300 Rh2BG014800 Rh2CG015400 Rh2DG016700
rosa_wichuraiana Rw2G001270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 591
AasI GACNNNNNNGTC 1 cut(s) 1670
Acc65I GGTACC 1 cut(s) 1589
AccB1I GGYRCC 4 cut(s) 1289, 1589, 2131, 2200
AccBSI CCGCTC 1 cut(s) 2144
AccIII TCCGGA 1 cut(s) 14
AciI CCGC 3 cut(s) 140, 614, 2142
AclWI GGATC 6 cut(s) 58, 501, 823, 836, 977, 990
AcoI YGGCCR 1 cut(s) 249
AcsI RAATTY 6 cut(s) 845, 1490, 1527, 1682, 1801, 1907
AcuI CTGAAG 3 cut(s) 812, 1368, 1653
AfaI GTAC 6 cut(s) 369, 578, 624, 779, 1591, 1886
AfiI CCNNNNNNNGG 6 cut(s) 113, 146, 674, 1063, 1118, 1352
AgsI TTSAA 9 cut(s) 685, 715, 758, 1307, 1343, 1399, 1609, 1864, 2090
AhdI GACNNNNNGTC 1 cut(s) 2236
AjnI CCWGG 3 cut(s) 81, 1165, 2005
AjuI GAANNNNNNNTTGG 4 cut(s) 713, 745, 1811, 1843
Alw26I GTCTC 4 cut(s) 1319, 1428, 1922, 2207
AlwI GGATC 6 cut(s) 58, 501, 823, 836, 977, 990
AlwNI CAGNNNCTG 2 cut(s) 1790, 2012
Ama87I CYCGRG 1 cut(s) 1834
Aor13HI TCCGGA 1 cut(s) 14
AoxI GGCC 8 cut(s) 78, 92, 115, 128, 249, 742, 1569, 2058
ApeKI GCWGC 4 cut(s) 821, 1868, 2138, 2300
ApoI RAATTY 6 cut(s) 845, 1490, 1527, 1682, 1801, 1907
Asp718I GGTACC 1 cut(s) 1589
AspA2I CCTAGG 1 cut(s) 739
AspLEI GCGC 3 cut(s) 1211, 1552, 2288
AspS9I GGNCC 5 cut(s) 79, 92, 128, 553, 743
AsuC2I CCSGG 1 cut(s) 2094
AsuHPI GGTGA 3 cut(s) 794, 1489, 2255
AsuNHI GCTAGC 1 cut(s) 2015
AvaI CYCGRG 1 cut(s) 1834
AvaII GGWCC 1 cut(s) 553
AvrII CCTAGG 1 cut(s) 739
AxyI CCTNAGG 1 cut(s) 2055
BalI TGGCCA 1 cut(s) 251
BamHI GGATCC 2 cut(s) 828, 982
BanI GGYRCC 4 cut(s) 1289, 1589, 2131, 2200
BanII GRGCYC 2 cut(s) 183, 216
BauI CACGAG 1 cut(s) 195
BbsI GAAGAC 2 cut(s) 722, 1351
BbvCI CCTCAGC 1 cut(s) 2105
BbvI GCAGC 4 cut(s) 833, 1855, 2150, 2312
BccI CCATC 4 cut(s) 1031, 1199, 1241, 1979
BceAI ACGGC 2 cut(s) 559, 1080
BcgI CGANNNNNNTGC 2 cut(s) 1071, 1105
BciT130I CCWGG 3 cut(s) 83, 1167, 2007
BclI TGATCA 4 cut(s) 807, 1021, 1131, 1650
BcnI CCSGG 1 cut(s) 2094
BcoDI GTCTC 4 cut(s) 1319, 1428, 1922, 2207
BfaI CTAG 6 cut(s) 740, 818, 1496, 1559, 2016, 2166
BfmI CTRYAG 1 cut(s) 973
BfoI RGCGCY 1 cut(s) 1212
BisI GCNGC 7 cut(s) 140, 615, 822, 1869, 2139, 2142, 2301
BlnI CCTAGG 1 cut(s) 739
BlsI GCNGC 7 cut(s) 141, 616, 823, 1870, 2140, 2143, 2302
Bme1390I CCNGG 4 cut(s) 83, 1167, 2007, 2094
Bme18I GGWCC 1 cut(s) 553
BmeRI GACNNNNNGTC 1 cut(s) 2236
BmeT110I CYCGRG 1 cut(s) 1834
BmgT120I GGNCC 5 cut(s) 79, 92, 128, 553, 743
BmiI GGNNCC 9 cut(s) 102, 745, 830, 984, 1291, 1426, 1591, 2133, 2202
BmrFI CCNGG 4 cut(s) 83, 1167, 2007, 2094
BmrI ACTGGG 1 cut(s) 2317
BmtI GCTAGC 1 cut(s) 2019
BmuI ACTGGG 1 cut(s) 2317
BpiI GAAGAC 2 cut(s) 722, 1351
BpmI CTGGAG 1 cut(s) 2178
Bpu10I CCTNAGC 1 cut(s) 2105
BpuEI CTTGAG 2 cut(s) 129, 1953
BpuMI CCSGG 1 cut(s) 2094
Bsa29I ATCGAT 2 cut(s) 1221, 1754
BsaI GGTCTC 1 cut(s) 2207
BsaJI CCNNGG 5 cut(s) 81, 739, 1420, 1428, 2005
BsaWI WCCGGW 5 cut(s) 14, 490, 550, 2240, 2273
BsaXI ACNNNNNCTCC 4 cut(s) 1376, 1406, 2216, 2246
Bsc4I CCNNNNNNNGG 6 cut(s) 113, 146, 674, 1063, 1118, 1352
Bse118I RCCGGY 1 cut(s) 1571
Bse1I ACTGG 6 cut(s) 556, 1479, 1528, 1849, 2195, 2312
Bse21I CCTNAGG 1 cut(s) 2055
Bse3DI GCAATG 1 cut(s) 1077
BseAI TCCGGA 1 cut(s) 14
BseBI CCWGG 3 cut(s) 83, 1167, 2007
BseCI ATCGAT 2 cut(s) 1221, 1754
BseDI CCNNGG 5 cut(s) 81, 739, 1420, 1428, 2005
BseGI GGATG 6 cut(s) 91, 538, 886, 1108, 1468, 1887
BseLI CCNNNNNNNGG 6 cut(s) 113, 146, 674, 1063, 1118, 1352
BseMI GCAATG 1 cut(s) 1077
BseNI ACTGG 6 cut(s) 556, 1479, 1528, 1849, 2195, 2312
BseRI GAGGAG 4 cut(s) 96, 113, 1397, 2093
BseXI GCAGC 4 cut(s) 833, 1855, 2150, 2312
BseYI CCCAGC 2 cut(s) 824, 1450
BsgI GTGCAG 2 cut(s) 1725, 2250
Bsh1285I CGRYCG 1 cut(s) 2274
BshFI GGCC 8 cut(s) 80, 94, 117, 130, 251, 744, 1571, 2060
BshNI GGYRCC 4 cut(s) 1289, 1589, 2131, 2200
BshVI ATCGAT 2 cut(s) 1221, 1754
BsiEI CGRYCG 1 cut(s) 2274
BsiHKCI CYCGRG 1 cut(s) 1834
BsiSI CCGG 8 cut(s) 15, 95, 491, 551, 1572, 2094, 2241, 2274
BsiWI CGTACG 1 cut(s) 576
BslFI GGGAC 2 cut(s) 241, 1401
BslI CCNNNNNNNGG 6 cut(s) 113, 146, 674, 1063, 1118, 1352
BsmAI GTCTC 4 cut(s) 1319, 1428, 1922, 2207
BsmFI GGGAC 2 cut(s) 241, 1401
BsmI GAATGC 1 cut(s) 1552
BsnI GGCC 8 cut(s) 80, 94, 117, 130, 251, 744, 1571, 2060
Bso31I GGTCTC 1 cut(s) 2207
BsoBI CYCGRG 1 cut(s) 1834
Bsp1286I GDGCHC 2 cut(s) 183, 216
Bsp13I TCCGGA 1 cut(s) 14
Bsp1407I TGTACA 2 cut(s) 622, 1884
BspACI CCGC 3 cut(s) 140, 614, 2142
BspANI GGCC 8 cut(s) 80, 94, 117, 130, 251, 744, 1571, 2060
BspDI ATCGAT 2 cut(s) 1221, 1754
BspEI TCCGGA 1 cut(s) 14
BspHI TCATGA 1 cut(s) 1647
BspLI GGNNCC 9 cut(s) 102, 745, 830, 984, 1291, 1426, 1591, 2133, 2202
BspOI GCTAGC 1 cut(s) 2019
BspPI GGATC 6 cut(s) 58, 501, 823, 836, 977, 990
BspT107I GGYRCC 4 cut(s) 1289, 1589, 2131, 2200
BspTNI GGTCTC 1 cut(s) 2207
BsrBI CCGCTC 1 cut(s) 2144
BsrDI GCAATG 1 cut(s) 1077
BsrFI RCCGGY 1 cut(s) 1571
BsrGI TGTACA 2 cut(s) 622, 1884
BsrI ACTGG 6 cut(s) 556, 1479, 1528, 1849, 2195, 2312
BssAI RCCGGY 1 cut(s) 1571
BssECI CCNNGG 5 cut(s) 81, 739, 1420, 1428, 2005
BssSI CACGAG 1 cut(s) 195
BssT1I CCWWGG 2 cut(s) 739, 1428
Bst2BI CACGAG 1 cut(s) 195
Bst2UI CCWGG 3 cut(s) 83, 1167, 2007
Bst4CI ACNGT 6 cut(s) 367, 526, 782, 1005, 1594, 1792
BstAUI TGTACA 2 cut(s) 622, 1884
BstC8I GCNNGC 6 cut(s) 1084, 1468, 2017, 2038, 2111, 2253
BstDSI CCRYGG 1 cut(s) 1420
BstEII GGTNACC 1 cut(s) 1477
BstENI CCTNNNNNAGG 3 cut(s) 111, 1116, 1350
BstF5I GGATG 6 cut(s) 91, 538, 886, 1108, 1468, 1887
BstH2I RGCGCY 1 cut(s) 1212
BstHHI GCGC 3 cut(s) 1211, 1552, 2288
BstMAI GTCTC 4 cut(s) 1319, 1428, 1922, 2207
BstMCI CGRYCG 1 cut(s) 2274
BstNI CCWGG 3 cut(s) 83, 1167, 2007
BstNSI RCATGY 3 cut(s) 572, 1086, 2040
BstPI GGTNACC 1 cut(s) 1477
BstSCI CCNGG 4 cut(s) 81, 1165, 2005, 2092
BstSFI CTRYAG 1 cut(s) 973
BstV1I GCAGC 4 cut(s) 833, 1855, 2150, 2312
BstV2I GAAGAC 2 cut(s) 722, 1351
BstX2I RGATCY 2 cut(s) 828, 982
BstXI CCANNNNNNTGG 2 cut(s) 895, 1985
BstYI RGATCY 2 cut(s) 828, 982
Bsu15I ATCGAT 2 cut(s) 1221, 1754
Bsu36I CCTNAGG 1 cut(s) 2055
BsuRI GGCC 8 cut(s) 80, 94, 117, 130, 251, 744, 1571, 2060
BsuTUI ATCGAT 2 cut(s) 1221, 1754
BtgI CCRYGG 1 cut(s) 1420
BtsCI GGATG 6 cut(s) 91, 538, 886, 1108, 1468, 1887
BtsIMutI CAGTG 4 cut(s) 1127, 1887, 2040, 2202
Cac8I GCNNGC 6 cut(s) 1084, 1468, 2017, 2038, 2111, 2253
CaiI CAGNNNCTG 2 cut(s) 1790, 2012
CciI TCATGA 1 cut(s) 1647
CfoI GCGC 3 cut(s) 1211, 1552, 2288
Cfr10I RCCGGY 1 cut(s) 1571
Cfr13I GGNCC 5 cut(s) 79, 92, 128, 553, 743
ClaI ATCGAT 2 cut(s) 1221, 1754
CseI GACGC 1 cut(s) 2171
Csp6I GTAC 6 cut(s) 368, 577, 623, 778, 1590, 1885
CviAII CATG 9 cut(s) 416, 569, 1083, 1377, 1648, 1921, 1979, 2037, 2258
CviQI GTAC 6 cut(s) 368, 577, 623, 778, 1590, 1885
DrdI GACNNNNNNGTC 1 cut(s) 1670
DriI GACNNNNNGTC 1 cut(s) 2236
DseDI GACNNNNNNGTC 1 cut(s) 1670
EaeI YGGCCR 1 cut(s) 249
Eam1105I GACNNNNNGTC 1 cut(s) 2236
Eco130I CCWWGG 2 cut(s) 739, 1428
Eco24I GRGCYC 2 cut(s) 183, 216
Eco31I GGTCTC 1 cut(s) 2207
Eco47I GGWCC 1 cut(s) 553
Eco57I CTGAAG 3 cut(s) 812, 1368, 1653
Eco81I CCTNAGG 1 cut(s) 2055
Eco88I CYCGRG 1 cut(s) 1834
Eco91I GGTNACC 1 cut(s) 1477
EcoNI CCTNNNNNAGG 3 cut(s) 111, 1116, 1350
EcoO109I RGGNCCY 1 cut(s) 743
EcoO65I GGTNACC 1 cut(s) 1477
EcoRI GAATTC 3 cut(s) 845, 1490, 1907
EcoRII CCWGG 3 cut(s) 81, 1165, 2005
EcoT14I CCWWGG 2 cut(s) 739, 1428
EcoT22I ATGCAT 2 cut(s) 586, 1300
EcoT38I GRGCYC 2 cut(s) 183, 216
ErhI CCWWGG 2 cut(s) 739, 1428
FaeI CATG 9 cut(s) 419, 572, 1086, 1380, 1651, 1924, 1982, 2040, 2261
FalI AAGNNNNNCTT 4 cut(s) 713, 745, 1421, 1453
FaqI GGGAC 2 cut(s) 241, 1401
FatI CATG 9 cut(s) 415, 568, 1082, 1376, 1647, 1920, 1978, 2036, 2257
FauNDI CATATG 1 cut(s) 1963
FbaI TGATCA 4 cut(s) 807, 1021, 1131, 1650
Fnu4HI GCNGC 7 cut(s) 140, 615, 822, 1869, 2139, 2142, 2301
FokI GGATG 6 cut(s) 98, 545, 893, 1115, 1475, 1874
FriOI GRGCYC 2 cut(s) 183, 216
Fsp4HI GCNGC 7 cut(s) 140, 615, 822, 1869, 2139, 2142, 2301
FspBI CTAG 6 cut(s) 740, 818, 1496, 1559, 2016, 2166
GlaI GCGC 3 cut(s) 1210, 1551, 2287
GluI GCNGC 7 cut(s) 140, 615, 822, 1869, 2139, 2142, 2301
GsaI CCCAGC 2 cut(s) 828, 1454
GsuI CTGGAG 1 cut(s) 2178
HaeII RGCGCY 1 cut(s) 1212
HaeIII GGCC 8 cut(s) 80, 94, 117, 130, 251, 744, 1571, 2060
HapII CCGG 8 cut(s) 15, 95, 491, 551, 1572, 2094, 2241, 2274
HgaI GACGC 1 cut(s) 2171
HhaI GCGC 3 cut(s) 1211, 1552, 2288
Hin1II CATG 9 cut(s) 419, 572, 1086, 1380, 1651, 1924, 1982, 2040, 2261
Hin6I GCGC 3 cut(s) 1209, 1550, 2286
HinP1I GCGC 3 cut(s) 1209, 1550, 2286
HincII GTYRAC 2 cut(s) 462, 2179
HindII GTYRAC 2 cut(s) 462, 2179
HpaII CCGG 8 cut(s) 15, 95, 491, 551, 1572, 2094, 2241, 2274
HphI GGTGA 3 cut(s) 794, 1489, 2255
Hpy166II GTNNAC 6 cut(s) 370, 462, 706, 1127, 1885, 2179
Hpy188I TCNGA 5 cut(s) 1021, 1072, 1191, 1939, 2230
Hpy8I GTNNAC 6 cut(s) 370, 462, 706, 1127, 1885, 2179
Hpy99I CGWCG 1 cut(s) 2165
HpyAV CCTTC 4 cut(s) 400, 911, 1267, 1858
HpyCH4III ACNGT 6 cut(s) 367, 526, 782, 1005, 1594, 1792
Hsp92II CATG 9 cut(s) 419, 572, 1086, 1380, 1651, 1924, 1982, 2040, 2261
HspAI GCGC 3 cut(s) 1209, 1550, 2286
Kpn2I TCCGGA 1 cut(s) 14
KpnI GGTACC 1 cut(s) 1593
Ksp22I TGATCA 4 cut(s) 807, 1021, 1131, 1650
LmnI GCTCC 7 cut(s) 100, 889, 1148, 1424, 1726, 2149, 2266
Lsp1109I GCAGC 4 cut(s) 833, 1855, 2150, 2312
MaeI CTAG 6 cut(s) 740, 818, 1496, 1559, 2016, 2166
MaeIII GTNAC 6 cut(s) 813, 859, 1477, 1786, 1993, 2243
MbiI CCGCTC 1 cut(s) 2144
MboII GAAGA 6 cut(s) 163, 721, 727, 805, 1351, 1819
MflI RGATCY 2 cut(s) 828, 982
MhlI GDGCHC 2 cut(s) 183, 216
MlsI TGGCCA 1 cut(s) 251
MluNI TGGCCA 1 cut(s) 251
MlyI GAGTC 5 cut(s) 463, 1365, 1630, 2219, 2225
MmeI TCCRAC 3 cut(s) 1010, 1024, 1842
Mox20I TGGCCA 1 cut(s) 251
Mph1103I ATGCAT 2 cut(s) 586, 1300
MroI TCCGGA 1 cut(s) 14
MscI TGGCCA 1 cut(s) 251
MseI TTAA 7 cut(s) 167, 299, 399, 1485, 1722, 2049, 2365
MslI CAYNNNNRTG 2 cut(s) 375, 1983
Msp20I TGGCCA 1 cut(s) 251
MspA1I CMGCKG 3 cut(s) 451, 614, 824
MspI CCGG 8 cut(s) 15, 95, 491, 551, 1572, 2094, 2241, 2274
MspR9I CCNGG 4 cut(s) 83, 1167, 2007, 2094
Mva1269I GAATGC 1 cut(s) 1552
MvaI CCWGG 3 cut(s) 83, 1167, 2007
NciI CCSGG 1 cut(s) 2094
NdeI CATATG 1 cut(s) 1963
NheI GCTAGC 1 cut(s) 2015
NlaIII CATG 9 cut(s) 419, 572, 1086, 1380, 1651, 1924, 1982, 2040, 2261
NlaIV GGNNCC 9 cut(s) 102, 745, 830, 984, 1291, 1426, 1591, 2133, 2202
NmuCI GTSAC 4 cut(s) 813, 1477, 1993, 2243
NsiI ATGCAT 2 cut(s) 586, 1300
NspI RCATGY 3 cut(s) 572, 1086, 2040
PaeI GCATGC 2 cut(s) 1086, 2040
PagI TCATGA 1 cut(s) 1647
PctI GAATGC 1 cut(s) 1552
PfeI GAWTC 7 cut(s) 8, 224, 796, 1268, 1303, 1387, 1974
Pfl23II CGTACG 1 cut(s) 576
PkrI GCNGC 7 cut(s) 141, 616, 823, 1870, 2140, 2143, 2302
PleI GAGTC 5 cut(s) 463, 1364, 1630, 2219, 2225
PpsI GAGTC 5 cut(s) 463, 1364, 1630, 2219, 2225
PsiI TTATAA 1 cut(s) 591
Psp6I CCWGG 3 cut(s) 81, 1165, 2005
PspEI GGTNACC 1 cut(s) 1477
PspFI CCCAGC 2 cut(s) 824, 1450
PspGI CCWGG 3 cut(s) 81, 1165, 2005
PspLI CGTACG 1 cut(s) 576
PspN4I GGNNCC 9 cut(s) 102, 745, 830, 984, 1291, 1426, 1591, 2133, 2202
PspPI GGNCC 5 cut(s) 79, 92, 128, 553, 743
PstNI CAGNNNCTG 2 cut(s) 1790, 2012
PsuI RGATCY 2 cut(s) 828, 982
PvuII CAGCTG 2 cut(s) 451, 824
RsaI GTAC 6 cut(s) 369, 578, 624, 779, 1591, 1886
RsaNI GTAC 6 cut(s) 368, 577, 623, 778, 1590, 1885
RseI CAYNNNNRTG 2 cut(s) 375, 1983
SaqAI TTAA 7 cut(s) 167, 299, 399, 1485, 1722, 2049, 2365
SatI GCNGC 7 cut(s) 140, 615, 822, 1869, 2139, 2142, 2301
Sau96I GGNCC 5 cut(s) 79, 92, 128, 553, 743
SchI GAGTC 5 cut(s) 463, 1365, 1630, 2219, 2225
ScrFI CCNGG 4 cut(s) 83, 1167, 2007, 2094
SduI GDGCHC 2 cut(s) 183, 216
SfcI CTRYAG 1 cut(s) 973
SinI GGWCC 1 cut(s) 553
SmiMI CAYNNNNRTG 2 cut(s) 375, 1983
SmlI CTYRAG 2 cut(s) 144, 1968
SmoI CTYRAG 2 cut(s) 144, 1968
SphI GCATGC 2 cut(s) 1086, 2040
SsiI CCGC 3 cut(s) 140, 614, 2142
SspMI CTAG 6 cut(s) 740, 818, 1496, 1559, 2016, 2166
StyD4I CCNGG 4 cut(s) 81, 1165, 2005, 2092
StyI CCWWGG 2 cut(s) 739, 1428
TaaI ACNGT 6 cut(s) 367, 526, 782, 1005, 1594, 1792
TaqI TCGA 9 cut(s) 227, 521, 732, 1221, 1536, 1623, 1634, 1754, 2160
TatI WGTACW 2 cut(s) 622, 1884
TauI GCSGC 3 cut(s) 142, 617, 2144
TfiI GAWTC 7 cut(s) 8, 224, 796, 1268, 1303, 1387, 1974
Tru1I TTAA 7 cut(s) 167, 299, 399, 1485, 1722, 2049, 2365
Tru9I TTAA 7 cut(s) 167, 299, 399, 1485, 1722, 2049, 2365
TscAI CASTG 4 cut(s) 1134, 1887, 2047, 2202
TseFI GTSAC 4 cut(s) 813, 1477, 1993, 2243
TseI GCWGC 4 cut(s) 821, 1868, 2138, 2300
Tsp45I GTSAC 4 cut(s) 813, 1477, 1993, 2243
TspDTI ATGAA 7 cut(s) 404, 650, 651, 838, 1503, 1819, 2042
TspGWI ACGGA 1 cut(s) 1437
TspRI CASTG 4 cut(s) 1134, 1887, 2047, 2202
VpaK11BI GGWCC 1 cut(s) 553
XagI CCTNNNNNAGG 3 cut(s) 111, 1116, 1350
XapI RAATTY 6 cut(s) 845, 1490, 1527, 1682, 1801, 1907
XceI RCATGY 3 cut(s) 572, 1086, 2040
XcmI CCANNNNNNNNNTGG 1 cut(s) 895
XmaJI CCTAGG 1 cut(s) 739
XspI CTAG 6 cut(s) 740, 818, 1496, 1559, 2016, 2166
Zsp2I ATGCAT 2 cut(s) 586, 1300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.