FvH4_1g01840

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0014626
Physical Location & Seq
Reverse (-)
961539 .. 963343
1805 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g01840.t1

Sequence Viewer

Length: 420 bp
ATGAGTACTACACCACCTCTAGCAGTCTCTCTTCTTCTTCTTCTGTTCCTTCTCCTTCCGCAGGCTCAAGGGATCCGATTGGAGAAAGGATTTATCTCAGTTAAACAACAAAACAAGAATATTCATGAGGATAGTACTGTTTTAACCAAAAAAAGTGAAAGCACTGCAGCTTCTGGTGTACTCAGAAAAGATTGTGGACATGATGATCACTGCTCATCATCAGGAAGCAGTAGAAAACTAATAACTGTGAGATCTTCTACCACCACTTCAAAGAACGAGAAGAATATTGTTGGCAAGCAAATTGGGAATCCGAAAGCTGAGGAGGAGGTTGCAACCACCCGACAACAATATCCAAACCTCATAGACCTGACCGAAATGGATTATTCTCCGGCCAGGAAAAAACCTCCGATACACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.26

Weight (kDa)

9.33

Isoelectric Point (pI)

60.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLV1-2 PF21529 88 - 139 1.6e-09 Gloven 1/2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014626)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01840
malus_domestica MD02G1016300.v1.1 MD15G1160900.v1.1
prunus_persica Prupe.7G256100_v2.0.a1
pyrus_communis pycom02g01450 pycom15g14480
rosa_chinensis RchiOBHm_Chr2g0086811
rosa_laevigata RLG00000015798
rosa_multiflora Rmu_sc0025147.1_g000001 Rmu_sc0027662.1_g000001
rosa_roxburghii Rroxscaffold_2G00154140
rosa_rugosa Rorug01G0469700.1
rosa_samantha Rh2AG022400 Rh2BG022700 Rh2CG023300 Rh2DG022900
rosa_wichuraiana Rw2G001780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 59
AclWI GGATC 2 cut(s) 67, 80
AcoI YGGCCR 1 cut(s) 390
AfaI GTAC 3 cut(s) 7, 136, 180
AfiI CCNNNNNNNGG 1 cut(s) 61
AgsI TTSAA 1 cut(s) 270
AjnI CCWGG 1 cut(s) 392
AluBI AGCT 2 cut(s) 170, 317
AluI AGCT 2 cut(s) 170, 317
Alw26I GTCTC 1 cut(s) 31
AlwI GGATC 2 cut(s) 67, 80
AlwNI CAGNNNCTG 1 cut(s) 173
AoxI GGCC 1 cut(s) 390
ApeKI GCWGC 1 cut(s) 167
BamHI GGATCC 1 cut(s) 72
BbvCI CCTCAGC 1 cut(s) 318
BbvI GCAGC 1 cut(s) 179
BciT130I CCWGG 1 cut(s) 394
BclI TGATCA 1 cut(s) 205
BcoDI GTCTC 1 cut(s) 31
BfaI CTAG 1 cut(s) 20
BfmI CTRYAG 1 cut(s) 165
BglII AGATCT 1 cut(s) 251
BisI GCNGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 169
BmcAI AGTACT 2 cut(s) 7, 136
Bme1390I CCNGG 1 cut(s) 394
BmiI GGNNCC 1 cut(s) 74
BmrFI CCNGG 1 cut(s) 394
Bpu10I CCTNAGC 1 cut(s) 318
BpuEI CTTGAG 1 cut(s) 51
Bsc4I CCNNNNNNNGG 1 cut(s) 61
BseBI CCWGG 1 cut(s) 394
BseLI CCNNNNNNNGG 1 cut(s) 61
BseMII CTCAG 3 cut(s) 111, 196, 309
BseRI GAGGAG 2 cut(s) 335, 338
BseXI GCAGC 1 cut(s) 179
BshFI GGCC 1 cut(s) 392
BsiSI CCGG 1 cut(s) 389
BslI CCNNNNNNNGG 1 cut(s) 61
BsmAI GTCTC 1 cut(s) 31
BsnI GGCC 1 cut(s) 392
Bsp143I GATC 3 cut(s) 72, 205, 251
BspACI CCGC 1 cut(s) 59
BspANI GGCC 1 cut(s) 392
BspCNI CTCAG 3 cut(s) 110, 195, 310
BspHI TCATGA 1 cut(s) 124
BspLI GGNNCC 1 cut(s) 74
BspMAI CTGCAG 1 cut(s) 169
BspPI GGATC 2 cut(s) 67, 80
BssMI GATC 3 cut(s) 72, 205, 251
Bst2UI CCWGG 1 cut(s) 394
Bst4CI ACNGT 2 cut(s) 139, 247
Bst6I CTCTTC 1 cut(s) 36
BstC8I GCNNGC 2 cut(s) 63, 296
BstDEI CTNAG 3 cut(s) 97, 182, 318
BstENI CCTNNNNNAGG 1 cut(s) 59
BstKTI GATC 3 cut(s) 75, 208, 254
BstMAI GTCTC 1 cut(s) 31
BstMBI GATC 3 cut(s) 72, 205, 251
BstNI CCWGG 1 cut(s) 394
BstSCI CCNGG 1 cut(s) 392
BstSFI CTRYAG 1 cut(s) 165
BstV1I GCAGC 1 cut(s) 179
BstX2I RGATCY 2 cut(s) 72, 251
BstYI RGATCY 2 cut(s) 72, 251
BsuRI GGCC 1 cut(s) 392
BtsI GCAGTG 2 cut(s) 162, 208
BtsIMutI CAGTG 2 cut(s) 162, 208
Cac8I GCNNGC 2 cut(s) 63, 296
CaiI CAGNNNCTG 1 cut(s) 173
CciI TCATGA 1 cut(s) 124
Csp6I GTAC 3 cut(s) 6, 135, 179
CviAII CATG 2 cut(s) 125, 200
CviJI RGCY 4 cut(s) 65, 170, 317, 392
CviKI_1 RGCY 4 cut(s) 65, 170, 317, 392
CviQI GTAC 3 cut(s) 6, 135, 179
DdeI CTNAG 3 cut(s) 97, 182, 318
DpnI GATC 3 cut(s) 74, 207, 253
DpnII GATC 3 cut(s) 72, 205, 251
EaeI YGGCCR 1 cut(s) 390
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
EcoNI CCTNNNNNAGG 1 cut(s) 59
EcoRII CCWGG 1 cut(s) 392
FaeI CATG 2 cut(s) 128, 203
FaiI YATR 3 cut(s) 126, 201, 362
FatI CATG 2 cut(s) 124, 199
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 1 cut(s) 168
Fsp4HI GCNGC 1 cut(s) 168
FspBI CTAG 1 cut(s) 20
GluI GCNGC 1 cut(s) 168
HaeIII GGCC 1 cut(s) 392
HapII CCGG 1 cut(s) 389
Hin1II CATG 2 cut(s) 128, 203
HinfI GANTC 1 cut(s) 307
HpaII CCGG 1 cut(s) 389
Hpy166II GTNNAC 2 cut(s) 179, 197
Hpy188I TCNGA 4 cut(s) 77, 185, 312, 408
Hpy188III TCNNGA 2 cut(s) 125, 222
Hpy8I GTNNAC 2 cut(s) 179, 197
HpyAV CCTTC 2 cut(s) 59, 65
HpyCH4III ACNGT 2 cut(s) 139, 247
HpyCH4V TGCA 2 cut(s) 167, 332
HpyF3I CTNAG 3 cut(s) 97, 182, 318
Hsp92II CATG 2 cut(s) 128, 203
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 3 cut(s) 72, 205, 251
LpnPI CCDG 7 cut(s) 47, 159, 207, 379, 380, 402, 406
Lsp1109I GCAGC 1 cut(s) 179
MaeI CTAG 1 cut(s) 20
MalI GATC 3 cut(s) 74, 207, 253
MboI GATC 3 cut(s) 72, 205, 251
MboII GAAGA 6 cut(s) 23, 26, 29, 32, 246, 292
MflI RGATCY 2 cut(s) 72, 251
MluCI AATT 1 cut(s) 300
MnlI CCTC 7 cut(s) 27, 121, 313, 316, 319, 368, 414
MseI TTAA 2 cut(s) 102, 143
MspI CCGG 1 cut(s) 389
MspR9I CCNGG 1 cut(s) 394
MvaI CCWGG 1 cut(s) 394
NdeII GATC 3 cut(s) 72, 205, 251
NlaIII CATG 2 cut(s) 128, 203
NlaIV GGNNCC 1 cut(s) 74
PagI TCATGA 1 cut(s) 124
PfeI GAWTC 1 cut(s) 307
PkrI GCNGC 1 cut(s) 169
Psp6I CCWGG 1 cut(s) 392
PspGI CCWGG 1 cut(s) 392
PspN4I GGNNCC 1 cut(s) 74
PstI CTGCAG 1 cut(s) 169
PstNI CAGNNNCTG 1 cut(s) 173
PsuI RGATCY 2 cut(s) 72, 251
RsaI GTAC 3 cut(s) 7, 136, 180
RsaNI GTAC 3 cut(s) 6, 135, 179
SaqAI TTAA 2 cut(s) 102, 143
SatI GCNGC 1 cut(s) 168
Sau3AI GATC 3 cut(s) 72, 205, 251
ScaI AGTACT 2 cut(s) 7, 136
ScrFI CCNGG 1 cut(s) 394
SetI ASST 7 cut(s) 19, 172, 319, 330, 360, 369, 406
SfcI CTRYAG 1 cut(s) 165
SmlI CTYRAG 1 cut(s) 66
SmoI CTYRAG 1 cut(s) 66
Sse9I AATT 1 cut(s) 300
SsiI CCGC 1 cut(s) 59
SspI AATATT 2 cut(s) 121, 286
SspMI CTAG 1 cut(s) 20
StyD4I CCNGG 1 cut(s) 392
TaaI ACNGT 2 cut(s) 139, 247
TaqII GACCGA 1 cut(s) 386
TasI AATT 1 cut(s) 300
TatI WGTACW 3 cut(s) 5, 134, 178
TfiI GAWTC 1 cut(s) 307
Tru1I TTAA 2 cut(s) 102, 143
Tru9I TTAA 2 cut(s) 102, 143
TscAI CASTG 2 cut(s) 169, 215
TseI GCWGC 1 cut(s) 167
TspDTI ATGAA 1 cut(s) 113
TspRI CASTG 2 cut(s) 169, 215
XagI CCTNNNNNAGG 1 cut(s) 59
XspI CTAG 1 cut(s) 20
ZrmI AGTACT 2 cut(s) 7, 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.