pycom15g14480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0014626
Physical Location & Seq
Reverse (-)
9882233 .. 9883618
1386 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g14480.1

Sequence Viewer

Length: 480 bp
ATGACTACTTCATCTTTGGCAGTCTCTCTTCTTCTTCTTTTGTGCCTCCTCCTTTCTCAGGCTCAAGGGATTCGTCTGGAGAAGGGATTCAGCTCAGTTAGACAGCAGAACAAAAATATCCAAGAAGAGGAAAATGCTTCAATGAAAAGAAGTAATATTGCAGCAGCTGGTCTTGCAGGAGAGCCTAGTAATATTGCATCATCAGGAAGAACTAGAAAACTAATCTCTGTGACTTCCCCCTCTAGTGCTACTACCACTTCAAAGAATGAGAAGAAAGGAAGGAAAAATAGAGCAGACTCCCAACCGAAAGGCAAAAATGTTAATAGCCATGGTGGAGAAGATGGGAATGGCAAAGCAAAATCACCAGTTGTTTCTAAGCAGCAGGAGGCTGCTGCAGCTCACCAACACTATCCGGATCTCGCAGACATGACGGAAATGGACTATTCTCCGGCGAAGAAAAAACCTCCGATACACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

16.95

Weight (kDa)

9.81

Isoelectric Point (pI)

61.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLV1-2 PF21529 126 - 159 1.4e-08 Gloven 1/2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014626)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01840
malus_domestica MD02G1016300.v1.1 MD15G1160900.v1.1
prunus_persica Prupe.7G256100_v2.0.a1
pyrus_communis pycom02g01450 pycom15g14480
rosa_chinensis RchiOBHm_Chr2g0086811
rosa_laevigata RLG00000015798
rosa_multiflora Rmu_sc0025147.1_g000001 Rmu_sc0027662.1_g000001
rosa_roxburghii Rroxscaffold_2G00154140
rosa_rugosa Rorug01G0469700.1
rosa_samantha Rh2AG022400 Rh2BG022700 Rh2CG023300 Rh2DG022900
rosa_wichuraiana Rw2G001780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 412
AclWI GGATC 1 cut(s) 423
AfiI CCNNNNNNNGG 2 cut(s) 58, 127
AgsI TTSAA 2 cut(s) 141, 261
AluBI AGCT 3 cut(s) 93, 167, 398
AluI AGCT 3 cut(s) 93, 167, 398
Alw26I GTCTC 1 cut(s) 28
AlwI GGATC 1 cut(s) 423
AlwNI CAGNNNCTG 1 cut(s) 167
Aor13HI TCCGGA 1 cut(s) 412
ApeKI GCWGC 6 cut(s) 161, 164, 379, 389, 392, 395
Asp700I GAANNNNTTC 1 cut(s) 86
AsuHPI GGTGA 2 cut(s) 354, 392
BbvI GCAGC 6 cut(s) 173, 176, 376, 379, 391, 407
BccI CCATC 1 cut(s) 335
BcoDI GTCTC 1 cut(s) 28
BfaI CTAG 3 cut(s) 186, 213, 243
BfmI CTRYAG 1 cut(s) 393
BisI GCNGC 6 cut(s) 162, 165, 380, 390, 393, 396
BlsI GCNGC 6 cut(s) 163, 166, 381, 391, 394, 397
BmsI GCATC 1 cut(s) 206
BpmI CTGGAG 1 cut(s) 98
BpuEI CTTGAG 1 cut(s) 48
BsaJI CCNNGG 1 cut(s) 328
BsaWI WCCGGW 1 cut(s) 412
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 127
Bse1I ACTGG 1 cut(s) 365
BseAI TCCGGA 1 cut(s) 412
BseDI CCNNGG 1 cut(s) 328
BseLI CCNNNNNNNGG 2 cut(s) 58, 127
BseMII CTCAG 2 cut(s) 71, 108
BseNI ACTGG 1 cut(s) 365
BseRI GAGGAG 1 cut(s) 38
BseXI GCAGC 6 cut(s) 173, 176, 376, 379, 391, 407
BsiSI CCGG 2 cut(s) 413, 449
BslI CCNNNNNNNGG 2 cut(s) 58, 127
BsmAI GTCTC 1 cut(s) 28
Bsp13I TCCGGA 1 cut(s) 412
Bsp143I GATC 1 cut(s) 415
Bsp19I CCATGG 1 cut(s) 328
BspCNI CTCAG 2 cut(s) 70, 107
BspEI TCCGGA 1 cut(s) 412
BspMAI CTGCAG 1 cut(s) 397
BspPI GGATC 1 cut(s) 423
BsrI ACTGG 1 cut(s) 365
BssECI CCNNGG 1 cut(s) 328
BssMI GATC 1 cut(s) 415
BssT1I CCWWGG 1 cut(s) 328
Bst6I CTCTTC 2 cut(s) 33, 120
BstDEI CTNAG 3 cut(s) 57, 94, 375
BstDSI CCRYGG 1 cut(s) 328
BstENI CCTNNNNNAGG 1 cut(s) 56
BstKTI GATC 1 cut(s) 418
BstMAI GTCTC 1 cut(s) 28
BstMBI GATC 1 cut(s) 415
BstMWI GCNNNNNNNGC 2 cut(s) 173, 395
BstSFI CTRYAG 1 cut(s) 393
BstV1I GCAGC 6 cut(s) 173, 176, 376, 379, 391, 407
BstX2I RGATCY 1 cut(s) 415
BstYI RGATCY 1 cut(s) 415
BtgI CCRYGG 1 cut(s) 328
CaiI CAGNNNCTG 1 cut(s) 167
CviAII CATG 2 cut(s) 329, 427
CviJI RGCY 7 cut(s) 62, 93, 167, 184, 327, 389, 398
CviKI_1 RGCY 7 cut(s) 62, 93, 167, 184, 327, 389, 398
DdeI CTNAG 3 cut(s) 57, 94, 375
DpnI GATC 1 cut(s) 417
DpnII GATC 1 cut(s) 415
Eam1104I CTCTTC 2 cut(s) 33, 120
EarI CTCTTC 2 cut(s) 33, 120
Eco130I CCWWGG 1 cut(s) 328
EcoNI CCTNNNNNAGG 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 328
ErhI CCWWGG 1 cut(s) 328
FaeI CATG 2 cut(s) 332, 430
FaiI YATR 2 cut(s) 330, 428
FatI CATG 2 cut(s) 328, 426
Fnu4HI GCNGC 6 cut(s) 162, 165, 380, 390, 393, 396
Fsp4HI GCNGC 6 cut(s) 162, 165, 380, 390, 393, 396
FspBI CTAG 3 cut(s) 186, 213, 243
GluI GCNGC 6 cut(s) 162, 165, 380, 390, 393, 396
GsuI CTGGAG 1 cut(s) 98
HapII CCGG 2 cut(s) 413, 449
Hin1II CATG 2 cut(s) 332, 430
HinfI GANTC 3 cut(s) 70, 87, 296
HpaII CCGG 2 cut(s) 413, 449
HphI GGTGA 2 cut(s) 354, 392
Hpy188I TCNGA 1 cut(s) 468
Hpy188III TCNNGA 3 cut(s) 77, 204, 413
HpyAV CCTTC 2 cut(s) 76, 273
HpyCH4V TGCA 4 cut(s) 161, 176, 197, 395
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 395
HpyF3I CTNAG 3 cut(s) 57, 94, 375
Hsp92II CATG 2 cut(s) 332, 430
Kpn2I TCCGGA 1 cut(s) 412
Kzo9I GATC 1 cut(s) 415
LpnPI CCDG 9 cut(s) 44, 62, 153, 162, 189, 368, 378, 426, 462
Lsp1109I GCAGC 6 cut(s) 173, 176, 376, 379, 391, 407
LweI GCATC 1 cut(s) 206
MaeI CTAG 3 cut(s) 186, 213, 243
MaeIII GTNAC 1 cut(s) 229
MalI GATC 1 cut(s) 417
MboI GATC 1 cut(s) 415
MboII GAAGA 8 cut(s) 20, 23, 26, 137, 219, 283, 350, 466
MflI RGATCY 1 cut(s) 415
MlyI GAGTC 1 cut(s) 290
MnlI CCTC 6 cut(s) 56, 59, 121, 250, 379, 474
MroI TCCGGA 1 cut(s) 412
MroXI GAANNNNTTC 1 cut(s) 86
MseI TTAA 1 cut(s) 321
MspA1I CMGCKG 1 cut(s) 167
MspI CCGG 2 cut(s) 413, 449
MwoI GCNNNNNNNGC 2 cut(s) 173, 395
NcoI CCATGG 1 cut(s) 328
NdeII GATC 1 cut(s) 415
NlaIII CATG 2 cut(s) 332, 430
NmuCI GTSAC 1 cut(s) 229
PdmI GAANNNNTTC 1 cut(s) 86
PfeI GAWTC 2 cut(s) 70, 87
PkrI GCNGC 6 cut(s) 163, 166, 381, 391, 394, 397
PleI GAGTC 1 cut(s) 290
PpsI GAGTC 1 cut(s) 290
PstI CTGCAG 1 cut(s) 397
PstNI CAGNNNCTG 1 cut(s) 167
PsuI RGATCY 1 cut(s) 415
PvuII CAGCTG 1 cut(s) 167
SaqAI TTAA 1 cut(s) 321
SatI GCNGC 6 cut(s) 162, 165, 380, 390, 393, 396
Sau3AI GATC 1 cut(s) 415
SchI GAGTC 1 cut(s) 290
SetI ASST 4 cut(s) 95, 169, 400, 466
SfaNI GCATC 1 cut(s) 206
SfcI CTRYAG 1 cut(s) 393
SmlI CTYRAG 1 cut(s) 63
SmoI CTYRAG 1 cut(s) 63
SspI AATATT 2 cut(s) 157, 193
SspMI CTAG 3 cut(s) 186, 213, 243
StyI CCWWGG 1 cut(s) 328
TfiI GAWTC 2 cut(s) 70, 87
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TseFI GTSAC 1 cut(s) 229
TseI GCWGC 6 cut(s) 161, 164, 379, 389, 392, 395
Tsp45I GTSAC 1 cut(s) 229
TspDTI ATGAA 1 cut(s) 158
TspGWI ACGGA 1 cut(s) 446
XagI CCTNNNNNAGG 1 cut(s) 56
XmnI GAANNNNTTC 1 cut(s) 86
XspI CTAG 3 cut(s) 186, 213, 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.