MD15G1160900.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0014626
Physical Location & Seq
Reverse (-)
12074956 .. 12077274
2319 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1160900.v1.1.491

Sequence Viewer

Length: 477 bp
ATGACTACTTCATCTTTGGCAGTCCCTCTTCTTCTTCTTTTGTGCCTCCTCCTTTCTCAGGCTCAAGGGATTCGTCTGGAGAACGGATTCAGCTCAGTTAGACAGCAGAACAAAAATATCCAAGAAGAGGAAAATGCTTCAATGAAAAGAAGTAATATTGCAGCTGGTCCTGCTGGAGAGCCTAGTAATATTGCATCATCAGGAGGAACTAGAAAACTAATCTCTGTGACATCCCCCTCTAGTGCTACTACCACTTCAAAGAATGAGAAGAAAGGAAGGAAAAATAGAGGCGACTCCGAACCGAAAGGCGAAAATGTTAATAGCCATGGTGGAGAAGATGGGAATGGCAAAGCAAAATCACCAGTTGTTTCCAAGCAGCAGGAGGCGGCTGCAGCTCACCAACACTACCCGGATCTCGCAGACATGACGGAAATGGACTATTCTCCGGCGAAGAAAAAACCTCCGATACACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

16.75

Weight (kDa)

9.24

Isoelectric Point (pI)

64.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLV1-2 PF21529 125 - 158 1.6e-08 Gloven 1/2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014626)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01840
malus_domestica MD02G1016300.v1.1 MD15G1160900.v1.1
prunus_persica Prupe.7G256100_v2.0.a1
pyrus_communis pycom02g01450 pycom15g14480
rosa_chinensis RchiOBHm_Chr2g0086811
rosa_laevigata RLG00000015798
rosa_multiflora Rmu_sc0025147.1_g000001 Rmu_sc0027662.1_g000001
rosa_roxburghii Rroxscaffold_2G00154140
rosa_rugosa Rorug01G0469700.1
rosa_samantha Rh2AG022400 Rh2BG022700 Rh2CG023300 Rh2DG022900
rosa_wichuraiana Rw2G001780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 386
AclWI GGATC 1 cut(s) 420
AfiI CCNNNNNNNGG 2 cut(s) 58, 127
AgsI TTSAA 2 cut(s) 141, 258
AluBI AGCT 3 cut(s) 93, 164, 395
AluI AGCT 3 cut(s) 93, 164, 395
AlwI GGATC 1 cut(s) 420
ApeKI GCWGC 4 cut(s) 161, 376, 389, 392
Asp700I GAANNNNTTC 1 cut(s) 86
AspS9I GGNCC 1 cut(s) 167
AsuC2I CCSGG 1 cut(s) 410
AsuHPI GGTGA 2 cut(s) 351, 389
AvaII GGWCC 1 cut(s) 167
BbvI GCAGC 4 cut(s) 173, 376, 388, 404
BccI CCATC 1 cut(s) 332
BcnI CCSGG 1 cut(s) 410
BfaI CTAG 3 cut(s) 183, 210, 240
BfmI CTRYAG 1 cut(s) 390
BisI GCNGC 5 cut(s) 162, 377, 387, 390, 393
BlsI GCNGC 5 cut(s) 163, 378, 388, 391, 394
Bme1390I CCNGG 1 cut(s) 410
Bme18I GGWCC 1 cut(s) 167
BmgT120I GGNCC 1 cut(s) 167
BmrFI CCNGG 1 cut(s) 410
BmsI GCATC 1 cut(s) 203
BpmI CTGGAG 2 cut(s) 98, 195
BpuEI CTTGAG 1 cut(s) 48
BpuMI CCSGG 1 cut(s) 410
BsaJI CCNNGG 1 cut(s) 325
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 127
Bse1I ACTGG 1 cut(s) 362
BseDI CCNNGG 1 cut(s) 325
BseGI GGATG 1 cut(s) 230
BseLI CCNNNNNNNGG 2 cut(s) 58, 127
BseMII CTCAG 2 cut(s) 71, 108
BseNI ACTGG 1 cut(s) 362
BseRI GAGGAG 1 cut(s) 38
BseXI GCAGC 4 cut(s) 173, 376, 388, 404
BsiSI CCGG 2 cut(s) 410, 446
BslFI GGGAC 1 cut(s) 8
BslI CCNNNNNNNGG 2 cut(s) 58, 127
BsmFI GGGAC 1 cut(s) 8
Bsp143I GATC 1 cut(s) 412
Bsp19I CCATGG 1 cut(s) 325
BspACI CCGC 1 cut(s) 386
BspCNI CTCAG 2 cut(s) 70, 107
BspMAI CTGCAG 1 cut(s) 394
BspPI GGATC 1 cut(s) 420
BsrI ACTGG 1 cut(s) 362
BssECI CCNNGG 1 cut(s) 325
BssMI GATC 1 cut(s) 412
BssT1I CCWWGG 1 cut(s) 325
Bst6I CTCTTC 2 cut(s) 33, 120
BstDEI CTNAG 2 cut(s) 57, 94
BstDSI CCRYGG 1 cut(s) 325
BstENI CCTNNNNNAGG 1 cut(s) 56
BstF5I GGATG 1 cut(s) 230
BstKTI GATC 1 cut(s) 415
BstMBI GATC 1 cut(s) 412
BstMWI GCNNNNNNNGC 2 cut(s) 170, 392
BstSCI CCNGG 1 cut(s) 408
BstSFI CTRYAG 1 cut(s) 390
BstV1I GCAGC 4 cut(s) 173, 376, 388, 404
BstX2I RGATCY 1 cut(s) 412
BstYI RGATCY 1 cut(s) 412
BtgI CCRYGG 1 cut(s) 325
BtsCI GGATG 1 cut(s) 230
Cfr13I GGNCC 1 cut(s) 167
CviAII CATG 2 cut(s) 326, 424
CviJI RGCY 7 cut(s) 62, 93, 164, 181, 324, 389, 395
CviKI_1 RGCY 7 cut(s) 62, 93, 164, 181, 324, 389, 395
DdeI CTNAG 2 cut(s) 57, 94
DpnI GATC 1 cut(s) 414
DpnII GATC 1 cut(s) 412
Eam1104I CTCTTC 2 cut(s) 33, 120
EarI CTCTTC 2 cut(s) 33, 120
Eco130I CCWWGG 1 cut(s) 325
Eco47I GGWCC 1 cut(s) 167
EcoNI CCTNNNNNAGG 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 325
ErhI CCWWGG 1 cut(s) 325
FaeI CATG 2 cut(s) 329, 427
FaiI YATR 2 cut(s) 327, 425
FaqI GGGAC 1 cut(s) 8
FatI CATG 2 cut(s) 325, 423
Fnu4HI GCNGC 5 cut(s) 162, 377, 387, 390, 393
FokI GGATG 1 cut(s) 217
Fsp4HI GCNGC 5 cut(s) 162, 377, 387, 390, 393
FspBI CTAG 3 cut(s) 183, 210, 240
GluI GCNGC 5 cut(s) 162, 377, 387, 390, 393
GsuI CTGGAG 2 cut(s) 98, 195
HapII CCGG 2 cut(s) 410, 446
Hin1II CATG 2 cut(s) 329, 427
HinfI GANTC 3 cut(s) 70, 87, 293
HpaII CCGG 2 cut(s) 410, 446
HphI GGTGA 2 cut(s) 351, 389
Hpy188I TCNGA 2 cut(s) 298, 465
Hpy188III TCNNGA 2 cut(s) 77, 201
HpyAV CCTTC 1 cut(s) 270
HpyCH4V TGCA 3 cut(s) 161, 194, 392
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 392
HpyF3I CTNAG 2 cut(s) 57, 94
Hsp92II CATG 2 cut(s) 329, 427
Kzo9I GATC 1 cut(s) 412
Lsp1109I GCAGC 4 cut(s) 173, 376, 388, 404
LweI GCATC 1 cut(s) 203
MaeI CTAG 3 cut(s) 183, 210, 240
MaeIII GTNAC 1 cut(s) 226
MalI GATC 1 cut(s) 414
MboI GATC 1 cut(s) 412
MboII GAAGA 7 cut(s) 20, 23, 26, 137, 280, 347, 463
MflI RGATCY 1 cut(s) 412
MlyI GAGTC 1 cut(s) 287
MnlI CCTC 9 cut(s) 36, 56, 59, 121, 197, 247, 281, 376, 471
MroXI GAANNNNTTC 1 cut(s) 86
MseI TTAA 1 cut(s) 318
MspA1I CMGCKG 1 cut(s) 164
MspI CCGG 2 cut(s) 410, 446
MspR9I CCNGG 1 cut(s) 410
MwoI GCNNNNNNNGC 2 cut(s) 170, 392
NciI CCSGG 1 cut(s) 410
NcoI CCATGG 1 cut(s) 325
NdeII GATC 1 cut(s) 412
NlaIII CATG 2 cut(s) 329, 427
NmuCI GTSAC 1 cut(s) 226
PdmI GAANNNNTTC 1 cut(s) 86
PfeI GAWTC 2 cut(s) 70, 87
PkrI GCNGC 5 cut(s) 163, 378, 388, 391, 394
PleI GAGTC 1 cut(s) 287
PpsI GAGTC 1 cut(s) 287
PspPI GGNCC 1 cut(s) 167
PstI CTGCAG 1 cut(s) 394
PsuI RGATCY 1 cut(s) 412
PvuII CAGCTG 1 cut(s) 164
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 5 cut(s) 162, 377, 387, 390, 393
Sau3AI GATC 1 cut(s) 412
Sau96I GGNCC 1 cut(s) 167
SchI GAGTC 1 cut(s) 287
ScrFI CCNGG 1 cut(s) 410
SetI ASST 4 cut(s) 95, 166, 397, 463
SfaNI GCATC 1 cut(s) 203
SfcI CTRYAG 1 cut(s) 390
SinI GGWCC 1 cut(s) 167
SmlI CTYRAG 1 cut(s) 63
SmoI CTYRAG 1 cut(s) 63
SsiI CCGC 1 cut(s) 386
SspI AATATT 2 cut(s) 157, 190
SspMI CTAG 3 cut(s) 183, 210, 240
StyD4I CCNGG 1 cut(s) 408
StyI CCWWGG 1 cut(s) 325
TauI GCSGC 1 cut(s) 389
TfiI GAWTC 2 cut(s) 70, 87
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 4 cut(s) 161, 376, 389, 392
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 1 cut(s) 158
TspGWI ACGGA 2 cut(s) 99, 443
VpaK11BI GGWCC 1 cut(s) 167
XagI CCTNNNNNAGG 1 cut(s) 56
XmnI GAANNNNTTC 1 cut(s) 86
XspI CTAG 3 cut(s) 183, 210, 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.