RchiOBHm_Chr2g0086811

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0014626
Physical Location & Seq
Reverse (-)
1793928 .. 1795542
1615 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46231

Sequence Viewer

Length: 354 bp
ATGTGGGGGGATAGTACTGTTTTAACCCCAAAAAGCGAAAGCACTGCAGCTTCTGGTGTACTCAGCAAAGATTGTGGACGTGATGATCGCTGCTTATCATCAGGAAGCAGTAGAAAACTAATCACTGTGACATCTTCTACTACCACTACCTCCACTACCAAGAATGAGAAGAATATTGTTGGTAGGAACGTTGGGCATCCGAAAGCTGAGTCGTCATCAGCTACTAATTCCGATAAGCACCATGAGGAGGAGAAGGAAGAGGTTGCAGCAACCGGACACCAATACCCGGACCCCATAGACATGACCGAAATGGATTATTCTCCTGCCAGGAGAAAACCTCCGATACACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.66

Weight (kDa)

6.19

Isoelectric Point (pI)

48.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLV1-2 PF21529 63 - 117 4.9e-08 Gloven 1/2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014626)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01840
malus_domestica MD02G1016300.v1.1 MD15G1160900.v1.1
prunus_persica Prupe.7G256100_v2.0.a1
pyrus_communis pycom02g01450 pycom15g14480
rosa_chinensis RchiOBHm_Chr2g0086811
rosa_laevigata RLG00000015798
rosa_multiflora Rmu_sc0025147.1_g000001 Rmu_sc0027662.1_g000001
rosa_roxburghii Rroxscaffold_2G00154140
rosa_rugosa Rorug01G0469700.1
rosa_samantha Rh2AG022400 Rh2BG022700 Rh2CG023300 Rh2DG022900
rosa_wichuraiana Rw2G001780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 189
AfaI GTAC 2 cut(s) 16, 60
AfiI CCNNNNNNNGG 2 cut(s) 247, 286
AjiI CACGTC 1 cut(s) 80
AjnI CCWGG 1 cut(s) 326
AluBI AGCT 3 cut(s) 50, 206, 221
AluI AGCT 3 cut(s) 50, 206, 221
AlwNI CAGNNNCTG 1 cut(s) 53
ApeKI GCWGC 3 cut(s) 47, 90, 266
ArsI GACNNNNNNTTYG 2 cut(s) 194, 226
AspS9I GGNCC 1 cut(s) 289
AsuC2I CCSGG 1 cut(s) 287
AvaII GGWCC 1 cut(s) 289
BbvI GCAGC 3 cut(s) 59, 77, 278
BcgI CGANNNNNNTGC 2 cut(s) 26, 60
BciT130I CCWGG 1 cut(s) 328
BcnI CCSGG 1 cut(s) 287
BfmI CTRYAG 1 cut(s) 45
BisI GCNGC 3 cut(s) 48, 91, 267
BlsI GCNGC 3 cut(s) 49, 92, 268
BmcAI AGTACT 1 cut(s) 16
Bme1390I CCNGG 2 cut(s) 287, 328
Bme18I GGWCC 1 cut(s) 289
BmgBI CACGTC 1 cut(s) 80
BmgT120I GGNCC 1 cut(s) 289
BmiI GGNNCC 1 cut(s) 291
BmrFI CCNGG 2 cut(s) 287, 328
BmsI GCATC 1 cut(s) 205
BplI GAGNNNNNCTC 2 cut(s) 322, 354
BpuMI CCSGG 1 cut(s) 287
BsaWI WCCGGW 1 cut(s) 272
Bsc4I CCNNNNNNNGG 2 cut(s) 247, 286
BseBI CCWGG 1 cut(s) 328
BseGI GGATG 1 cut(s) 196
BseLI CCNNNNNNNGG 2 cut(s) 247, 286
BseMII CTCAG 2 cut(s) 76, 198
BseRI GAGGAG 2 cut(s) 260, 263
BseXI GCAGC 3 cut(s) 59, 77, 278
BsiSI CCGG 2 cut(s) 273, 287
BslI CCNNNNNNNGG 2 cut(s) 247, 286
Bsp143I GATC 1 cut(s) 85
BspCNI CTCAG 2 cut(s) 75, 199
BspLI GGNNCC 1 cut(s) 291
BspMAI CTGCAG 1 cut(s) 49
BssMI GATC 1 cut(s) 85
Bst2UI CCWGG 1 cut(s) 328
Bst4CI ACNGT 2 cut(s) 19, 127
Bst6I CTCTTC 1 cut(s) 252
BstDEI CTNAG 2 cut(s) 62, 207
BstF5I GGATG 1 cut(s) 196
BstKTI GATC 1 cut(s) 88
BstMBI GATC 1 cut(s) 85
BstNI CCWGG 1 cut(s) 328
BstSCI CCNGG 2 cut(s) 285, 326
BstSFI CTRYAG 1 cut(s) 45
BstV1I GCAGC 3 cut(s) 59, 77, 278
BtrI CACGTC 1 cut(s) 80
BtsCI GGATG 1 cut(s) 196
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 2 cut(s) 42, 123
CaiI CAGNNNCTG 1 cut(s) 53
Cfr13I GGNCC 1 cut(s) 289
Csp6I GTAC 2 cut(s) 15, 59
CspCI CAANNNNNGTGG 2 cut(s) 55, 90
CviAII CATG 2 cut(s) 242, 301
CviJI RGCY 3 cut(s) 50, 206, 221
CviKI_1 RGCY 3 cut(s) 50, 206, 221
CviQI GTAC 2 cut(s) 15, 59
DdeI CTNAG 2 cut(s) 62, 207
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
Eam1104I CTCTTC 1 cut(s) 252
EarI CTCTTC 1 cut(s) 252
Eco47I GGWCC 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 326
FaeI CATG 2 cut(s) 245, 304
FaiI YATR 3 cut(s) 243, 296, 302
FatI CATG 2 cut(s) 241, 300
Fnu4HI GCNGC 3 cut(s) 48, 91, 267
FokI GGATG 1 cut(s) 183
Fsp4HI GCNGC 3 cut(s) 48, 91, 267
GluI GCNGC 3 cut(s) 48, 91, 267
HapII CCGG 2 cut(s) 273, 287
Hin1II CATG 2 cut(s) 245, 304
HinfI GANTC 1 cut(s) 209
HpaII CCGG 2 cut(s) 273, 287
Hpy166II GTNNAC 2 cut(s) 59, 77
Hpy188I TCNGA 3 cut(s) 201, 232, 342
Hpy188III TCNNGA 1 cut(s) 102
Hpy8I GTNNAC 2 cut(s) 59, 77
HpyAV CCTTC 1 cut(s) 247
HpyCH4III ACNGT 2 cut(s) 19, 127
HpyCH4IV ACGT 2 cut(s) 79, 189
HpyCH4V TGCA 2 cut(s) 47, 266
HpyF3I CTNAG 2 cut(s) 62, 207
HpySE526I ACGT 2 cut(s) 79, 189
Hsp92II CATG 2 cut(s) 245, 304
Kzo9I GATC 1 cut(s) 85
LpnPI CCDG 7 cut(s) 39, 87, 286, 300, 313, 336, 340
Lsp1109I GCAGC 3 cut(s) 59, 77, 278
LweI GCATC 1 cut(s) 205
MaeII ACGT 2 cut(s) 79, 189
MaeIII GTNAC 1 cut(s) 127
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MboII GAAGA 3 cut(s) 126, 181, 269
MfeI CAATTG 1 cut(s) 349
MluCI AATT 2 cut(s) 226, 349
MlyI GAGTC 1 cut(s) 218
MnlI CCTC 5 cut(s) 160, 238, 241, 253, 348
MseI TTAA 1 cut(s) 23
MslI CAYNNNNRTG 1 cut(s) 299
MspI CCGG 2 cut(s) 273, 287
MspR9I CCNGG 2 cut(s) 287, 328
MunI CAATTG 1 cut(s) 349
MvaI CCWGG 1 cut(s) 328
NciI CCSGG 1 cut(s) 287
NdeII GATC 1 cut(s) 85
NlaIII CATG 2 cut(s) 245, 304
NlaIV GGNNCC 1 cut(s) 291
NmuCI GTSAC 1 cut(s) 127
PkrI GCNGC 3 cut(s) 49, 92, 268
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
Psp1406I AACGTT 1 cut(s) 189
Psp6I CCWGG 1 cut(s) 326
PspGI CCWGG 1 cut(s) 326
PspN4I GGNNCC 1 cut(s) 291
PspPI GGNCC 1 cut(s) 289
PstI CTGCAG 1 cut(s) 49
PstNI CAGNNNCTG 1 cut(s) 53
RsaI GTAC 2 cut(s) 16, 60
RsaNI GTAC 2 cut(s) 15, 59
RseI CAYNNNNRTG 1 cut(s) 299
SaqAI TTAA 1 cut(s) 23
SatI GCNGC 3 cut(s) 48, 91, 267
Sau3AI GATC 1 cut(s) 85
Sau96I GGNCC 1 cut(s) 289
ScaI AGTACT 1 cut(s) 16
SchI GAGTC 1 cut(s) 218
ScrFI CCNGG 2 cut(s) 287, 328
SetI ASST 8 cut(s) 52, 82, 152, 192, 208, 223, 264, 340
SfaNI GCATC 1 cut(s) 205
SfcI CTRYAG 1 cut(s) 45
SinI GGWCC 1 cut(s) 289
SmiMI CAYNNNNRTG 1 cut(s) 299
Sse9I AATT 2 cut(s) 226, 349
SspI AATATT 1 cut(s) 175
StyD4I CCNGG 2 cut(s) 285, 326
TaaI ACNGT 2 cut(s) 19, 127
TaiI ACGT 2 cut(s) 82, 192
TaqII GACCGA 1 cut(s) 320
TasI AATT 2 cut(s) 226, 349
TatI WGTACW 2 cut(s) 14, 58
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TscAI CASTG 2 cut(s) 49, 130
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 3 cut(s) 47, 90, 266
Tsp45I GTSAC 1 cut(s) 127
TspRI CASTG 2 cut(s) 49, 130
VpaK11BI GGWCC 1 cut(s) 289
ZrmI AGTACT 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.