RLG00000015798

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0014626
Physical Location & Seq
Reverse (-)
1488570 .. 1490113
1544 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015798

Sequence Viewer

Length: 594 bp
ATGAGTAGTACTGCATCTCTAGCAGTCTACCTTCTTCTTCTGTCCCTGCTCCTTTCTCAGGCTCAAGGGATCCGATTGGAGAAAAGATTTATATCAGTCAAGCAACAGAACAAGAATATACATGAGGATAGTACTGCTTTAACCCAAAAAAGCAAAAGCACTGCAGCTTCTGGTGTACTCAGCAAAGATTGTGGACGTGATGATCGCTGCTTATCATCAGGTACTACTAGCTTGAAGAAAATTAAAGTTCCTAGATCTTCTTCTTCTTCAGCAATATCTCCGTCCGAGAAGTCCTCATCATCACACTCGCACCACTGGTTACCAAGAATTCATGAAGATTACCGAAGCAGTAGAAAACTAATCACTGTGACATCTTCTACTACCACTACCTCCACTACCAAGAATGAGAAGAATATTGTTGGTAGGAACGTTGGGCATCCGAAAGCTGAGTCGTCATCAGCTACTAATTCCGATAAGCACCATGAGGAGGAGAAGGAAGAGGTTGCAGCCACTGGACACCAATACCCGGACCCCATAGACATGACCGAAATGGATTATTCTCCTGCCAGGAGAAAACCTCCGATACACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

21.63

Weight (kDa)

9.44

Isoelectric Point (pI)

58.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLV1-2 PF21529 147 - 197 4.2e-08 Gloven 1/2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014626)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01840
malus_domestica MD02G1016300.v1.1 MD15G1160900.v1.1
prunus_persica Prupe.7G256100_v2.0.a1
pyrus_communis pycom02g01450 pycom15g14480
rosa_chinensis RchiOBHm_Chr2g0086811
rosa_laevigata RLG00000015798
rosa_multiflora Rmu_sc0025147.1_g000001 Rmu_sc0027662.1_g000001
rosa_roxburghii Rroxscaffold_2G00154140
rosa_rugosa Rorug01G0469700.1
rosa_samantha Rh2AG022400 Rh2BG022700 Rh2CG023300 Rh2DG022900
rosa_wichuraiana Rw2G001780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 27
AclI AACGTT 1 cut(s) 429
AclWI GGATC 2 cut(s) 64, 77
AcsI RAATTY 1 cut(s) 327
AcuI CTGAAG 1 cut(s) 252
AfaI GTAC 4 cut(s) 10, 133, 177, 223
AfiI CCNNNNNNNGG 3 cut(s) 58, 487, 526
AgsI TTSAA 1 cut(s) 235
AjiI CACGTC 1 cut(s) 197
AjnI CCWGG 1 cut(s) 566
AluBI AGCT 4 cut(s) 167, 231, 446, 461
AluI AGCT 4 cut(s) 167, 231, 446, 461
AlwI GGATC 2 cut(s) 64, 77
AlwNI CAGNNNCTG 2 cut(s) 170, 512
ApeKI GCWGC 3 cut(s) 164, 207, 506
ApoI RAATTY 1 cut(s) 327
ArsI GACNNNNNNTTYG 2 cut(s) 434, 466
AspS9I GGNCC 1 cut(s) 529
AsuC2I CCSGG 1 cut(s) 527
AvaII GGWCC 1 cut(s) 529
BamHI GGATCC 1 cut(s) 69
BbvI GCAGC 3 cut(s) 176, 194, 518
BciT130I CCWGG 1 cut(s) 568
BcnI CCSGG 1 cut(s) 527
BfaI CTAG 3 cut(s) 20, 228, 252
BfmI CTRYAG 1 cut(s) 162
BglII AGATCT 1 cut(s) 254
BisI GCNGC 3 cut(s) 165, 208, 507
BlsI GCNGC 3 cut(s) 166, 209, 508
BmcAI AGTACT 2 cut(s) 10, 133
Bme1390I CCNGG 2 cut(s) 527, 568
Bme18I GGWCC 1 cut(s) 529
BmgBI CACGTC 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 529
BmiI GGNNCC 2 cut(s) 71, 531
BmrFI CCNGG 2 cut(s) 527, 568
BmsI GCATC 2 cut(s) 23, 445
BplI GAGNNNNNCTC 4 cut(s) 278, 310, 562, 594
BpuEI CTTGAG 1 cut(s) 48
BpuMI CCSGG 1 cut(s) 527
BsaBI GATNNNNATC 1 cut(s) 91
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 487, 526
Bse1I ACTGG 2 cut(s) 320, 517
Bse8I GATNNNNATC 1 cut(s) 91
BseBI CCWGG 1 cut(s) 568
BseGI GGATG 1 cut(s) 436
BseJI GATNNNNATC 1 cut(s) 91
BseLI CCNNNNNNNGG 3 cut(s) 58, 487, 526
BseMII CTCAG 3 cut(s) 71, 193, 438
BseNI ACTGG 2 cut(s) 320, 517
BseRI GAGGAG 2 cut(s) 500, 503
BseXI GCAGC 3 cut(s) 176, 194, 518
BsiSI CCGG 1 cut(s) 527
BslFI GGGAC 1 cut(s) 28
BslI CCNNNNNNNGG 3 cut(s) 58, 487, 526
BsmFI GGGAC 1 cut(s) 28
Bsp143I GATC 3 cut(s) 69, 202, 254
BspCNI CTCAG 3 cut(s) 70, 192, 439
BspHI TCATGA 1 cut(s) 331
BspLI GGNNCC 2 cut(s) 71, 531
BspMAI CTGCAG 1 cut(s) 166
BspPI GGATC 2 cut(s) 64, 77
BsrI ACTGG 2 cut(s) 320, 517
BssMI GATC 3 cut(s) 69, 202, 254
Bst2UI CCWGG 1 cut(s) 568
Bst4CI ACNGT 1 cut(s) 367
Bst6I CTCTTC 1 cut(s) 492
BstDEI CTNAG 3 cut(s) 57, 179, 447
BstEII GGTNACC 1 cut(s) 318
BstENI CCTNNNNNAGG 1 cut(s) 56
BstF5I GGATG 1 cut(s) 436
BstKTI GATC 3 cut(s) 72, 205, 257
BstMBI GATC 3 cut(s) 69, 202, 254
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstNI CCWGG 1 cut(s) 568
BstPI GGTNACC 1 cut(s) 318
BstSCI CCNGG 2 cut(s) 525, 566
BstSFI CTRYAG 1 cut(s) 162
BstV1I GCAGC 3 cut(s) 176, 194, 518
BstX2I RGATCY 2 cut(s) 69, 254
BstYI RGATCY 2 cut(s) 69, 254
BtrI CACGTC 1 cut(s) 197
BtsCI GGATG 1 cut(s) 436
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 4 cut(s) 159, 313, 363, 510
CaiI CAGNNNCTG 2 cut(s) 170, 512
CciI TCATGA 1 cut(s) 331
Cfr13I GGNCC 1 cut(s) 529
Csp6I GTAC 4 cut(s) 9, 132, 176, 222
CspCI CAANNNNNGTGG 2 cut(s) 172, 207
CviAII CATG 4 cut(s) 122, 332, 482, 541
CviJI RGCY 6 cut(s) 62, 167, 231, 446, 461, 509
CviKI_1 RGCY 6 cut(s) 62, 167, 231, 446, 461, 509
CviQI GTAC 4 cut(s) 9, 132, 176, 222
DdeI CTNAG 3 cut(s) 57, 179, 447
DpnI GATC 3 cut(s) 71, 204, 256
DpnII GATC 3 cut(s) 69, 202, 254
Eam1104I CTCTTC 1 cut(s) 492
EarI CTCTTC 1 cut(s) 492
Eco47I GGWCC 1 cut(s) 529
Eco57I CTGAAG 1 cut(s) 252
Eco91I GGTNACC 1 cut(s) 318
EcoNI CCTNNNNNAGG 1 cut(s) 56
EcoO65I GGTNACC 1 cut(s) 318
EcoRI GAATTC 1 cut(s) 327
EcoRII CCWGG 1 cut(s) 566
FaeI CATG 4 cut(s) 125, 335, 485, 544
FaiI YATR 7 cut(s) 92, 119, 123, 333, 483, 536, 542
FaqI GGGAC 1 cut(s) 28
FatI CATG 4 cut(s) 121, 331, 481, 540
FblI GTMKAC 1 cut(s) 27
Fnu4HI GCNGC 3 cut(s) 165, 208, 507
FokI GGATG 1 cut(s) 423
Fsp4HI GCNGC 3 cut(s) 165, 208, 507
FspBI CTAG 3 cut(s) 20, 228, 252
GluI GCNGC 3 cut(s) 165, 208, 507
HapII CCGG 1 cut(s) 527
Hin1II CATG 4 cut(s) 125, 335, 485, 544
HinfI GANTC 1 cut(s) 449
HpaII CCGG 1 cut(s) 527
Hpy166II GTNNAC 3 cut(s) 28, 176, 194
Hpy188I TCNGA 5 cut(s) 74, 286, 441, 472, 582
Hpy188III TCNNGA 1 cut(s) 332
Hpy8I GTNNAC 3 cut(s) 28, 176, 194
HpyAV CCTTC 2 cut(s) 41, 487
HpyCH4III ACNGT 1 cut(s) 367
HpyCH4IV ACGT 2 cut(s) 196, 429
HpyCH4V TGCA 3 cut(s) 14, 164, 506
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpyF3I CTNAG 3 cut(s) 57, 179, 447
HpySE526I ACGT 2 cut(s) 196, 429
Hsp92II CATG 4 cut(s) 125, 335, 485, 544
Kzo9I GATC 3 cut(s) 69, 202, 254
LmnI GCTCC 1 cut(s) 54
Lsp1109I GCAGC 3 cut(s) 176, 194, 518
LweI GCATC 2 cut(s) 23, 445
MaeI CTAG 3 cut(s) 20, 228, 252
MaeII ACGT 2 cut(s) 196, 429
MaeIII GTNAC 2 cut(s) 318, 367
MalI GATC 3 cut(s) 71, 204, 256
MboI GATC 3 cut(s) 69, 202, 254
MfeI CAATTG 1 cut(s) 589
MflI RGATCY 2 cut(s) 69, 254
MluCI AATT 4 cut(s) 240, 327, 466, 589
MlyI GAGTC 1 cut(s) 458
MnlI CCTC 7 cut(s) 118, 304, 400, 478, 481, 493, 588
MseI TTAA 2 cut(s) 140, 243
MslI CAYNNNNRTG 1 cut(s) 539
MspI CCGG 1 cut(s) 527
MspR9I CCNGG 2 cut(s) 527, 568
MunI CAATTG 1 cut(s) 589
MvaI CCWGG 1 cut(s) 568
MwoI GCNNNNNNNGC 1 cut(s) 20
NciI CCSGG 1 cut(s) 527
NdeII GATC 3 cut(s) 69, 202, 254
NlaIII CATG 4 cut(s) 125, 335, 485, 544
NlaIV GGNNCC 2 cut(s) 71, 531
NmuCI GTSAC 1 cut(s) 367
PagI TCATGA 1 cut(s) 331
PkrI GCNGC 3 cut(s) 166, 209, 508
PleI GAGTC 1 cut(s) 457
PpsI GAGTC 1 cut(s) 457
Psp1406I AACGTT 1 cut(s) 429
Psp6I CCWGG 1 cut(s) 566
PspEI GGTNACC 1 cut(s) 318
PspGI CCWGG 1 cut(s) 566
PspN4I GGNNCC 2 cut(s) 71, 531
PspPI GGNCC 1 cut(s) 529
PstI CTGCAG 1 cut(s) 166
PstNI CAGNNNCTG 2 cut(s) 170, 512
PsuI RGATCY 2 cut(s) 69, 254
RsaI GTAC 4 cut(s) 10, 133, 177, 223
RsaNI GTAC 4 cut(s) 9, 132, 176, 222
RseI CAYNNNNRTG 1 cut(s) 539
SaqAI TTAA 2 cut(s) 140, 243
SatI GCNGC 3 cut(s) 165, 208, 507
Sau3AI GATC 3 cut(s) 69, 202, 254
Sau96I GGNCC 1 cut(s) 529
ScaI AGTACT 2 cut(s) 10, 133
SchI GAGTC 1 cut(s) 458
ScrFI CCNGG 2 cut(s) 527, 568
SfaNI GCATC 2 cut(s) 23, 445
SfcI CTRYAG 1 cut(s) 162
SinI GGWCC 1 cut(s) 529
SmiMI CAYNNNNRTG 1 cut(s) 539
SmlI CTYRAG 1 cut(s) 63
SmoI CTYRAG 1 cut(s) 63
Sse9I AATT 4 cut(s) 240, 327, 466, 589
SspI AATATT 1 cut(s) 415
SspMI CTAG 3 cut(s) 20, 228, 252
StyD4I CCNGG 2 cut(s) 525, 566
TaaI ACNGT 1 cut(s) 367
TaiI ACGT 2 cut(s) 199, 432
TaqII GACCGA 1 cut(s) 560
TasI AATT 4 cut(s) 240, 327, 466, 589
TatI WGTACW 3 cut(s) 8, 131, 175
Tru1I TTAA 2 cut(s) 140, 243
Tru9I TTAA 2 cut(s) 140, 243
TscAI CASTG 4 cut(s) 166, 320, 370, 517
TseFI GTSAC 1 cut(s) 367
TseI GCWGC 3 cut(s) 164, 207, 506
Tsp45I GTSAC 1 cut(s) 367
TspDTI ATGAA 2 cut(s) 320, 348
TspGWI ACGGA 1 cut(s) 270
TspRI CASTG 4 cut(s) 166, 320, 370, 517
VpaK11BI GGWCC 1 cut(s) 529
XagI CCTNNNNNAGG 1 cut(s) 56
XapI RAATTY 1 cut(s) 327
XmiI GTMKAC 1 cut(s) 27
XspI CTAG 3 cut(s) 20, 228, 252
ZrmI AGTACT 2 cut(s) 10, 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.