Rh2AG022400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0014626
Physical Location & Seq
Reverse (-)
1601673 .. 1604158
2486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG022400.1

Sequence Viewer

Length: 471 bp
ATGAGTGCTACTGCATCTCTAGCTGTCTATCTTCTTCTTCTGTCCCTGCTCCTTTGTCAGGCTCAAGGGATCCGACTGGAGAAAGGATTTATATCAGTCAAGCAAAAGAACAAGAATATACATGGGGATAGTACTGTTTTAACCCCAAAAAGCGAAAGCACTGCAGCTTCTGGTGTACTCAGCAAAGATTGTGGACGTGATGATCGCTGCTTATCATCAGGAAGCAGCAGAAAACTAATCACTGTGACATCTTCTACTACCACTACCTCCACTACCAAGAATGAGAAGAATATTGTTGGTAGGAACGTTGGGCATCCGAAAGCTGAGTCGTCATCAGCTACTAATTCCGATAAGCACCATGAGGAGGAGAAGGAAGAGGTTGCAGCAACCGGACACCAATACCCGGACCCCATAGACATGACCGAAATGGATTATTCTCCTGCCAGGAGAAAACCTCCGATACACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

16.84

Weight (kDa)

8.43

Isoelectric Point (pI)

46.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLV1-2 PF21529 106 - 156 5.3e-08 Gloven 1/2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014626)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01840
malus_domestica MD02G1016300.v1.1 MD15G1160900.v1.1
prunus_persica Prupe.7G256100_v2.0.a1
pyrus_communis pycom02g01450 pycom15g14480
rosa_chinensis RchiOBHm_Chr2g0086811
rosa_laevigata RLG00000015798
rosa_multiflora Rmu_sc0025147.1_g000001 Rmu_sc0027662.1_g000001
rosa_roxburghii Rroxscaffold_2G00154140
rosa_rugosa Rorug01G0469700.1
rosa_samantha Rh2AG022400 Rh2BG022700 Rh2CG023300 Rh2DG022900
rosa_wichuraiana Rw2G001780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 306
AclWI GGATC 2 cut(s) 64, 77
AfaI GTAC 2 cut(s) 133, 177
AfiI CCNNNNNNNGG 3 cut(s) 58, 364, 403
AjiI CACGTC 1 cut(s) 197
AjnI CCWGG 1 cut(s) 443
AluBI AGCT 4 cut(s) 23, 167, 323, 338
AluI AGCT 4 cut(s) 23, 167, 323, 338
AlwI GGATC 2 cut(s) 64, 77
AlwNI CAGNNNCTG 1 cut(s) 170
ApeKI GCWGC 4 cut(s) 164, 207, 225, 383
ArsI GACNNNNNNTTYG 2 cut(s) 311, 343
AspS9I GGNCC 1 cut(s) 406
AsuC2I CCSGG 1 cut(s) 404
AvaII GGWCC 1 cut(s) 406
BamHI GGATCC 1 cut(s) 69
BbvI GCAGC 4 cut(s) 176, 194, 237, 395
BcgI CGANNNNNNTGC 2 cut(s) 143, 177
BciT130I CCWGG 1 cut(s) 445
BcnI CCSGG 1 cut(s) 404
BfaI CTAG 1 cut(s) 20
BfmI CTRYAG 1 cut(s) 162
BisI GCNGC 4 cut(s) 165, 208, 226, 384
BlsI GCNGC 4 cut(s) 166, 209, 227, 385
BmcAI AGTACT 1 cut(s) 133
Bme1390I CCNGG 2 cut(s) 404, 445
Bme18I GGWCC 1 cut(s) 406
BmgBI CACGTC 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 406
BmiI GGNNCC 2 cut(s) 71, 408
BmrFI CCNGG 2 cut(s) 404, 445
BmsI GCATC 2 cut(s) 23, 322
BplI GAGNNNNNCTC 2 cut(s) 439, 471
BpmI CTGGAG 1 cut(s) 98
BpuEI CTTGAG 1 cut(s) 48
BpuMI CCSGG 1 cut(s) 404
BsaBI GATNNNNATC 1 cut(s) 91
BsaWI WCCGGW 1 cut(s) 389
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 364, 403
Bse1I ACTGG 1 cut(s) 81
Bse8I GATNNNNATC 1 cut(s) 91
BseBI CCWGG 1 cut(s) 445
BseGI GGATG 1 cut(s) 313
BseJI GATNNNNATC 1 cut(s) 91
BseLI CCNNNNNNNGG 3 cut(s) 58, 364, 403
BseMII CTCAG 2 cut(s) 193, 315
BseNI ACTGG 1 cut(s) 81
BseRI GAGGAG 2 cut(s) 377, 380
BseXI GCAGC 4 cut(s) 176, 194, 237, 395
BsiSI CCGG 2 cut(s) 390, 404
BslFI GGGAC 1 cut(s) 28
BslI CCNNNNNNNGG 3 cut(s) 58, 364, 403
BsmFI GGGAC 1 cut(s) 28
Bsp143I GATC 2 cut(s) 69, 202
BspCNI CTCAG 2 cut(s) 192, 316
BspLI GGNNCC 2 cut(s) 71, 408
BspMAI CTGCAG 1 cut(s) 166
BspPI GGATC 2 cut(s) 64, 77
BsrI ACTGG 1 cut(s) 81
BssMI GATC 2 cut(s) 69, 202
Bst2UI CCWGG 1 cut(s) 445
Bst4CI ACNGT 2 cut(s) 136, 244
Bst6I CTCTTC 1 cut(s) 369
BstDEI CTNAG 2 cut(s) 179, 324
BstENI CCTNNNNNAGG 1 cut(s) 56
BstF5I GGATG 1 cut(s) 313
BstKTI GATC 2 cut(s) 72, 205
BstMBI GATC 2 cut(s) 69, 202
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstNI CCWGG 1 cut(s) 445
BstSCI CCNGG 2 cut(s) 402, 443
BstSFI CTRYAG 1 cut(s) 162
BstV1I GCAGC 4 cut(s) 176, 194, 237, 395
BstX2I RGATCY 1 cut(s) 69
BstYI RGATCY 1 cut(s) 69
BtrI CACGTC 1 cut(s) 197
BtsCI GGATG 1 cut(s) 313
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 2 cut(s) 159, 240
CaiI CAGNNNCTG 1 cut(s) 170
Cfr13I GGNCC 1 cut(s) 406
Csp6I GTAC 2 cut(s) 132, 176
CspCI CAANNNNNGTGG 2 cut(s) 172, 207
CviAII CATG 3 cut(s) 122, 359, 418
CviJI RGCY 5 cut(s) 23, 62, 167, 323, 338
CviKI_1 RGCY 5 cut(s) 23, 62, 167, 323, 338
CviQI GTAC 2 cut(s) 132, 176
DdeI CTNAG 2 cut(s) 179, 324
DpnI GATC 2 cut(s) 71, 204
DpnII GATC 2 cut(s) 69, 202
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
Eco47I GGWCC 1 cut(s) 406
EcoNI CCTNNNNNAGG 1 cut(s) 56
EcoRII CCWGG 1 cut(s) 443
FaeI CATG 3 cut(s) 125, 362, 421
FaiI YATR 6 cut(s) 92, 119, 123, 360, 413, 419
FaqI GGGAC 1 cut(s) 28
FatI CATG 3 cut(s) 121, 358, 417
Fnu4HI GCNGC 4 cut(s) 165, 208, 226, 384
FokI GGATG 1 cut(s) 300
Fsp4HI GCNGC 4 cut(s) 165, 208, 226, 384
FspBI CTAG 1 cut(s) 20
GluI GCNGC 4 cut(s) 165, 208, 226, 384
GsuI CTGGAG 1 cut(s) 98
HapII CCGG 2 cut(s) 390, 404
Hin1II CATG 3 cut(s) 125, 362, 421
HinfI GANTC 1 cut(s) 326
HpaII CCGG 2 cut(s) 390, 404
Hpy166II GTNNAC 2 cut(s) 176, 194
Hpy188I TCNGA 4 cut(s) 74, 318, 349, 459
Hpy188III TCNNGA 1 cut(s) 219
Hpy8I GTNNAC 2 cut(s) 176, 194
HpyAV CCTTC 1 cut(s) 364
HpyCH4III ACNGT 2 cut(s) 136, 244
HpyCH4IV ACGT 2 cut(s) 196, 306
HpyCH4V TGCA 3 cut(s) 14, 164, 383
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpyF3I CTNAG 2 cut(s) 179, 324
HpySE526I ACGT 2 cut(s) 196, 306
Hsp92II CATG 3 cut(s) 125, 362, 421
Kzo9I GATC 2 cut(s) 69, 202
LmnI GCTCC 1 cut(s) 54
Lsp1109I GCAGC 4 cut(s) 176, 194, 237, 395
LweI GCATC 2 cut(s) 23, 322
MaeI CTAG 1 cut(s) 20
MaeII ACGT 2 cut(s) 196, 306
MaeIII GTNAC 1 cut(s) 244
MalI GATC 2 cut(s) 71, 204
MboI GATC 2 cut(s) 69, 202
MboII GAAGA 6 cut(s) 23, 26, 29, 243, 298, 386
MfeI CAATTG 1 cut(s) 466
MflI RGATCY 1 cut(s) 69
MluCI AATT 2 cut(s) 343, 466
MlyI GAGTC 1 cut(s) 335
MmeI TCCRAC 1 cut(s) 97
MnlI CCTC 5 cut(s) 277, 355, 358, 370, 465
MseI TTAA 1 cut(s) 140
MslI CAYNNNNRTG 1 cut(s) 416
MspI CCGG 2 cut(s) 390, 404
MspR9I CCNGG 2 cut(s) 404, 445
MunI CAATTG 1 cut(s) 466
MvaI CCWGG 1 cut(s) 445
MwoI GCNNNNNNNGC 1 cut(s) 20
NciI CCSGG 1 cut(s) 404
NdeII GATC 2 cut(s) 69, 202
NlaIII CATG 3 cut(s) 125, 362, 421
NlaIV GGNNCC 2 cut(s) 71, 408
NmuCI GTSAC 1 cut(s) 244
PkrI GCNGC 4 cut(s) 166, 209, 227, 385
PleI GAGTC 1 cut(s) 334
PpsI GAGTC 1 cut(s) 334
Psp1406I AACGTT 1 cut(s) 306
Psp6I CCWGG 1 cut(s) 443
PspGI CCWGG 1 cut(s) 443
PspN4I GGNNCC 2 cut(s) 71, 408
PspPI GGNCC 1 cut(s) 406
PstI CTGCAG 1 cut(s) 166
PstNI CAGNNNCTG 1 cut(s) 170
PsuI RGATCY 1 cut(s) 69
RsaI GTAC 2 cut(s) 133, 177
RsaNI GTAC 2 cut(s) 132, 176
RseI CAYNNNNRTG 1 cut(s) 416
SaqAI TTAA 1 cut(s) 140
SatI GCNGC 4 cut(s) 165, 208, 226, 384
Sau3AI GATC 2 cut(s) 69, 202
Sau96I GGNCC 1 cut(s) 406
ScaI AGTACT 1 cut(s) 133
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 2 cut(s) 404, 445
SetI ASST 9 cut(s) 25, 169, 199, 269, 309, 325, 340, 381, 457
SfaNI GCATC 2 cut(s) 23, 322
SfcI CTRYAG 1 cut(s) 162
SinI GGWCC 1 cut(s) 406
SmiMI CAYNNNNRTG 1 cut(s) 416
SmlI CTYRAG 1 cut(s) 63
SmoI CTYRAG 1 cut(s) 63
Sse9I AATT 2 cut(s) 343, 466
SspI AATATT 1 cut(s) 292
SspMI CTAG 1 cut(s) 20
StyD4I CCNGG 2 cut(s) 402, 443
TaaI ACNGT 2 cut(s) 136, 244
TaiI ACGT 2 cut(s) 199, 309
TaqII GACCGA 1 cut(s) 437
TasI AATT 2 cut(s) 343, 466
TatI WGTACW 2 cut(s) 131, 175
Tru1I TTAA 1 cut(s) 140
Tru9I TTAA 1 cut(s) 140
TscAI CASTG 2 cut(s) 166, 247
TseFI GTSAC 1 cut(s) 244
TseI GCWGC 4 cut(s) 164, 207, 225, 383
Tsp45I GTSAC 1 cut(s) 244
TspRI CASTG 2 cut(s) 166, 247
VpaK11BI GGWCC 1 cut(s) 406
XagI CCTNNNNNAGG 1 cut(s) 56
XspI CTAG 1 cut(s) 20
ZrmI AGTACT 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.