Rroxscaffold_2G00154140

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0014626
Physical Location & Seq
Forward (+)
90839657 .. 90843399
3743 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00154140.1

Sequence Viewer

Length: 414 bp
ATGGCATGCAAGAGACATGCTGCCACGTCTGGTCGGCGGTGGATTGGCGATGTGAAACGGCTCAAGGAGGATAGTACTGTTTTAACCCCAAAAAGCGAAAGCACTGCAGCTTCTGGTGTATTCAGCAAAGATTGTGGACATGATGATCGCTGCTTATCATCAGGAAGCAGTAGAAAACTAATCACTGTGACATCTTCTACTACCACTACCTCCACTACCAAGAATGAGAAGAATATTGTTGGTAGGAACGTTGGGCATCCGAAAGCTGAGTCGTCATCAGCTACTAATTCCGATAAGCACCCTGAGGAGGAGAAGGAAGAGGTTGCAGCAACCGGACACCAATACCCGGACCCCATAGACGTGACCGAAATGGATTATTCTCCTGCCAGGAGAAAACCTCCGATACACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

14.88

Weight (kDa)

8.45

Isoelectric Point (pI)

63.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLV1-2 PF21529 83 - 137 1.3e-07 Gloven 1/2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014626)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01840
malus_domestica MD02G1016300.v1.1 MD15G1160900.v1.1
prunus_persica Prupe.7G256100_v2.0.a1
pyrus_communis pycom02g01450 pycom15g14480
rosa_chinensis RchiOBHm_Chr2g0086811
rosa_laevigata RLG00000015798
rosa_multiflora Rmu_sc0025147.1_g000001 Rmu_sc0027662.1_g000001
rosa_roxburghii Rroxscaffold_2G00154140
rosa_rugosa Rorug01G0469700.1
rosa_samantha Rh2AG022400 Rh2BG022700 Rh2CG023300 Rh2DG022900
rosa_wichuraiana Rw2G001780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 37
AclI AACGTT 1 cut(s) 249
AfaI GTAC 1 cut(s) 76
AfiI CCNNNNNNNGG 2 cut(s) 307, 346
AjiI CACGTC 2 cut(s) 27, 361
AjnI CCWGG 1 cut(s) 386
AluBI AGCT 3 cut(s) 110, 266, 281
AluI AGCT 3 cut(s) 110, 266, 281
Alw26I GTCTC 1 cut(s) 7
AlwNI CAGNNNCTG 1 cut(s) 113
ApeKI GCWGC 4 cut(s) 20, 107, 150, 326
ArsI GACNNNNNNTTYG 2 cut(s) 254, 286
AspS9I GGNCC 1 cut(s) 349
AsuC2I CCSGG 1 cut(s) 347
AvaII GGWCC 1 cut(s) 349
AxyI CCTNAGG 1 cut(s) 303
BbvI GCAGC 4 cut(s) 7, 119, 137, 338
BceAI ACGGC 1 cut(s) 74
BcgI CGANNNNNNTGC 2 cut(s) 86, 120
BciT130I CCWGG 1 cut(s) 388
BcnI CCSGG 1 cut(s) 347
BcoDI GTCTC 1 cut(s) 7
BfmI CTRYAG 1 cut(s) 105
BisI GCNGC 4 cut(s) 21, 108, 151, 327
BlsI GCNGC 4 cut(s) 22, 109, 152, 328
BmcAI AGTACT 1 cut(s) 76
Bme1390I CCNGG 2 cut(s) 347, 388
Bme18I GGWCC 1 cut(s) 349
BmgBI CACGTC 2 cut(s) 27, 361
BmgT120I GGNCC 1 cut(s) 349
BmiI GGNNCC 1 cut(s) 351
BmrFI CCNGG 2 cut(s) 347, 388
BmsI GCATC 1 cut(s) 265
BplI GAGNNNNNCTC 2 cut(s) 382, 414
BpuEI CTTGAG 1 cut(s) 47
BpuMI CCSGG 1 cut(s) 347
BsaWI WCCGGW 1 cut(s) 332
Bsc4I CCNNNNNNNGG 2 cut(s) 307, 346
Bse21I CCTNAGG 1 cut(s) 303
BseBI CCWGG 1 cut(s) 388
BseGI GGATG 1 cut(s) 256
BseLI CCNNNNNNNGG 2 cut(s) 307, 346
BseMII CTCAG 2 cut(s) 258, 294
BseRI GAGGAG 2 cut(s) 320, 323
BseXI GCAGC 4 cut(s) 7, 119, 137, 338
BsiSI CCGG 2 cut(s) 333, 347
BslI CCNNNNNNNGG 2 cut(s) 307, 346
BsmAI GTCTC 1 cut(s) 7
Bsp143I GATC 1 cut(s) 145
BspACI CCGC 1 cut(s) 37
BspCNI CTCAG 2 cut(s) 259, 295
BspLI GGNNCC 1 cut(s) 351
BspMAI CTGCAG 1 cut(s) 109
BssMI GATC 1 cut(s) 145
Bst2UI CCWGG 1 cut(s) 388
Bst4CI ACNGT 2 cut(s) 79, 187
Bst6I CTCTTC 1 cut(s) 312
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 2 cut(s) 267, 303
BstF5I GGATG 1 cut(s) 256
BstKTI GATC 1 cut(s) 148
BstMAI GTCTC 1 cut(s) 7
BstMBI GATC 1 cut(s) 145
BstNI CCWGG 1 cut(s) 388
BstNSI RCATGY 2 cut(s) 9, 20
BstSCI CCNGG 2 cut(s) 345, 386
BstSFI CTRYAG 1 cut(s) 105
BstV1I GCAGC 4 cut(s) 7, 119, 137, 338
Bsu36I CCTNAGG 1 cut(s) 303
BtgZI GCGATG 1 cut(s) 63
BtrI CACGTC 2 cut(s) 27, 361
BtsCI GGATG 1 cut(s) 256
BtsI GCAGTG 1 cut(s) 102
BtsIMutI CAGTG 2 cut(s) 102, 183
Cac8I GCNNGC 1 cut(s) 7
CaiI CAGNNNCTG 1 cut(s) 113
Cfr13I GGNCC 1 cut(s) 349
Csp6I GTAC 1 cut(s) 75
CspCI CAANNNNNGTGG 2 cut(s) 115, 150
CviAII CATG 3 cut(s) 6, 17, 140
CviJI RGCY 4 cut(s) 61, 110, 266, 281
CviKI_1 RGCY 4 cut(s) 61, 110, 266, 281
CviQI GTAC 1 cut(s) 75
DdeI CTNAG 2 cut(s) 267, 303
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
Eam1104I CTCTTC 1 cut(s) 312
EarI CTCTTC 1 cut(s) 312
Eco47I GGWCC 1 cut(s) 349
Eco81I CCTNAGG 1 cut(s) 303
EcoRII CCWGG 1 cut(s) 386
FaeI CATG 3 cut(s) 9, 20, 143
FaiI YATR 4 cut(s) 7, 18, 141, 356
FatI CATG 3 cut(s) 5, 16, 139
Fnu4HI GCNGC 4 cut(s) 21, 108, 151, 327
FokI GGATG 1 cut(s) 243
Fsp4HI GCNGC 4 cut(s) 21, 108, 151, 327
GluI GCNGC 4 cut(s) 21, 108, 151, 327
HapII CCGG 2 cut(s) 333, 347
Hin1II CATG 3 cut(s) 9, 20, 143
HinfI GANTC 1 cut(s) 269
HpaII CCGG 2 cut(s) 333, 347
Hpy166II GTNNAC 1 cut(s) 137
Hpy188I TCNGA 3 cut(s) 261, 292, 402
Hpy188III TCNNGA 1 cut(s) 162
Hpy8I GTNNAC 1 cut(s) 137
HpyAV CCTTC 1 cut(s) 307
HpyCH4III ACNGT 2 cut(s) 79, 187
HpyCH4IV ACGT 3 cut(s) 26, 249, 360
HpyCH4V TGCA 3 cut(s) 9, 107, 326
HpyF3I CTNAG 2 cut(s) 267, 303
HpySE526I ACGT 3 cut(s) 26, 249, 360
Hsp92II CATG 3 cut(s) 9, 20, 143
Kzo9I GATC 1 cut(s) 145
LpnPI CCDG 9 cut(s) 15, 99, 147, 315, 346, 360, 373, 396, 400
Lsp1109I GCAGC 4 cut(s) 7, 119, 137, 338
LweI GCATC 1 cut(s) 265
MaeII ACGT 3 cut(s) 26, 249, 360
MaeIII GTNAC 2 cut(s) 187, 361
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MboII GAAGA 3 cut(s) 186, 241, 329
MfeI CAATTG 1 cut(s) 409
MluCI AATT 2 cut(s) 286, 409
MlyI GAGTC 1 cut(s) 278
MnlI CCTC 6 cut(s) 61, 220, 298, 301, 313, 408
MseI TTAA 1 cut(s) 83
MslI CAYNNNNRTG 1 cut(s) 359
MspI CCGG 2 cut(s) 333, 347
MspR9I CCNGG 2 cut(s) 347, 388
MunI CAATTG 1 cut(s) 409
MvaI CCWGG 1 cut(s) 388
NciI CCSGG 1 cut(s) 347
NdeII GATC 1 cut(s) 145
NlaIII CATG 3 cut(s) 9, 20, 143
NlaIV GGNNCC 1 cut(s) 351
NmuCI GTSAC 2 cut(s) 187, 361
NspI RCATGY 2 cut(s) 9, 20
PaeI GCATGC 1 cut(s) 9
PkrI GCNGC 4 cut(s) 22, 109, 152, 328
PleI GAGTC 1 cut(s) 277
PpsI GAGTC 1 cut(s) 277
Psp1406I AACGTT 1 cut(s) 249
Psp6I CCWGG 1 cut(s) 386
PspGI CCWGG 1 cut(s) 386
PspN4I GGNNCC 1 cut(s) 351
PspPI GGNCC 1 cut(s) 349
PstI CTGCAG 1 cut(s) 109
PstNI CAGNNNCTG 1 cut(s) 113
RsaI GTAC 1 cut(s) 76
RsaNI GTAC 1 cut(s) 75
RseI CAYNNNNRTG 1 cut(s) 359
SaqAI TTAA 1 cut(s) 83
SatI GCNGC 4 cut(s) 21, 108, 151, 327
Sau3AI GATC 1 cut(s) 145
Sau96I GGNCC 1 cut(s) 349
ScaI AGTACT 1 cut(s) 76
SchI GAGTC 1 cut(s) 278
ScrFI CCNGG 2 cut(s) 347, 388
SetI ASST 9 cut(s) 29, 112, 212, 252, 268, 283, 324, 363, 400
SfaNI GCATC 1 cut(s) 265
SfcI CTRYAG 1 cut(s) 105
SinI GGWCC 1 cut(s) 349
SmiMI CAYNNNNRTG 1 cut(s) 359
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
SphI GCATGC 1 cut(s) 9
Sse9I AATT 2 cut(s) 286, 409
SsiI CCGC 1 cut(s) 37
SspI AATATT 1 cut(s) 235
StyD4I CCNGG 2 cut(s) 345, 386
TaaI ACNGT 2 cut(s) 79, 187
TaiI ACGT 3 cut(s) 29, 252, 363
TaqII GACCGA 1 cut(s) 380
TasI AATT 2 cut(s) 286, 409
TatI WGTACW 1 cut(s) 74
Tru1I TTAA 1 cut(s) 83
Tru9I TTAA 1 cut(s) 83
TscAI CASTG 2 cut(s) 109, 190
TseFI GTSAC 2 cut(s) 187, 361
TseI GCWGC 4 cut(s) 20, 107, 150, 326
Tsp45I GTSAC 2 cut(s) 187, 361
TspRI CASTG 2 cut(s) 109, 190
VpaK11BI GGWCC 1 cut(s) 349
XceI RCATGY 2 cut(s) 9, 20
ZrmI AGTACT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.