Rh2CG023300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0014626
Physical Location & Seq
Reverse (-)
1771456 .. 1773945
2490 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG023300.1

Sequence Viewer

Length: 384 bp
ATGAGTACTACTGCATCTCTAGCTGTCTATCTTCTTCTTCTGTCCCTGCTCCTTTCTCAGGCTCAAGGGATCCGATTGGAGAAAGGATTTATATCAGTCAAGCAACAGAACAAGAATATACATGGGGATAGTACTGTTTTAACCCCAAAAAGCGAAAGCACTGCAGCTTCTGGTGTACTCAGCAAAGATTGTGGACGTGATGATCCCTGCTTATCATCAGGTACTACTAGCTTGAAGAAAATTAAAGTTCCTAGATCTTCTTCTTCTTCTTCTTCAGCAATATCTCCGTCCGAGAAGTCCCCATCATCACACTCGCACCACTGGTTACCAAGAATTCATGAAGATTACTGTGGACCTAGGAGACACAGATCCAAGCACCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

13.75

Weight (kDa)

9.76

Isoelectric Point (pI)

64.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014626)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01840
malus_domestica MD02G1016300.v1.1 MD15G1160900.v1.1
prunus_persica Prupe.7G256100_v2.0.a1
pyrus_communis pycom02g01450 pycom15g14480
rosa_chinensis RchiOBHm_Chr2g0086811
rosa_laevigata RLG00000015798
rosa_multiflora Rmu_sc0025147.1_g000001 Rmu_sc0027662.1_g000001
rosa_roxburghii Rroxscaffold_2G00154140
rosa_rugosa Rorug01G0469700.1
rosa_samantha Rh2AG022400 Rh2BG022700 Rh2CG023300 Rh2DG022900
rosa_wichuraiana Rw2G001780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 64, 77, 197, 363
AcsI RAATTY 1 cut(s) 333
AcuI CTGAAG 1 cut(s) 258
AfaI GTAC 4 cut(s) 7, 133, 177, 223
AfiI CCNNNNNNNGG 1 cut(s) 58
AgsI TTSAA 1 cut(s) 235
AjiI CACGTC 1 cut(s) 197
AluBI AGCT 3 cut(s) 23, 167, 231
AluI AGCT 3 cut(s) 23, 167, 231
Alw26I GTCTC 1 cut(s) 355
AlwI GGATC 4 cut(s) 64, 77, 197, 363
AlwNI CAGNNNCTG 1 cut(s) 170
ApeKI GCWGC 1 cut(s) 164
ApoI RAATTY 1 cut(s) 333
AspA2I CCTAGG 1 cut(s) 356
AspS9I GGNCC 1 cut(s) 353
AvaII GGWCC 1 cut(s) 353
AvrII CCTAGG 1 cut(s) 356
BamHI GGATCC 1 cut(s) 69
BbvI GCAGC 1 cut(s) 176
BccI CCATC 1 cut(s) 310
BcgI CGANNNNNNTGC 2 cut(s) 143, 177
BcoDI GTCTC 1 cut(s) 355
BfaI CTAG 4 cut(s) 20, 228, 252, 357
BfmI CTRYAG 1 cut(s) 162
BglII AGATCT 1 cut(s) 254
BisI GCNGC 1 cut(s) 165
BlnI CCTAGG 1 cut(s) 356
BlsI GCNGC 1 cut(s) 166
BmcAI AGTACT 2 cut(s) 7, 133
Bme18I GGWCC 1 cut(s) 353
BmgBI CACGTC 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 353
BmiI GGNNCC 1 cut(s) 71
BmsI GCATC 1 cut(s) 23
BpuEI CTTGAG 1 cut(s) 48
BsaBI GATNNNNATC 1 cut(s) 91
BsaJI CCNNGG 1 cut(s) 356
Bsc4I CCNNNNNNNGG 1 cut(s) 58
Bse1I ACTGG 1 cut(s) 326
Bse8I GATNNNNATC 1 cut(s) 91
BseDI CCNNGG 1 cut(s) 356
BseJI GATNNNNATC 1 cut(s) 91
BseLI CCNNNNNNNGG 1 cut(s) 58
BseMII CTCAG 2 cut(s) 71, 193
BseNI ACTGG 1 cut(s) 326
BseXI GCAGC 1 cut(s) 176
BslFI GGGAC 2 cut(s) 28, 283
BslI CCNNNNNNNGG 1 cut(s) 58
BsmAI GTCTC 1 cut(s) 355
BsmFI GGGAC 2 cut(s) 28, 283
Bsp143I GATC 4 cut(s) 69, 202, 254, 368
BspCNI CTCAG 2 cut(s) 70, 192
BspHI TCATGA 1 cut(s) 337
BspLI GGNNCC 1 cut(s) 71
BspMAI CTGCAG 1 cut(s) 166
BspPI GGATC 4 cut(s) 64, 77, 197, 363
BsrI ACTGG 1 cut(s) 326
BssECI CCNNGG 1 cut(s) 356
BssMI GATC 4 cut(s) 69, 202, 254, 368
BssT1I CCWWGG 1 cut(s) 356
Bst4CI ACNGT 2 cut(s) 136, 350
BstDEI CTNAG 2 cut(s) 57, 179
BstEII GGTNACC 1 cut(s) 324
BstENI CCTNNNNNAGG 1 cut(s) 56
BstKTI GATC 4 cut(s) 72, 205, 257, 371
BstMAI GTCTC 1 cut(s) 355
BstMBI GATC 4 cut(s) 69, 202, 254, 368
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstPI GGTNACC 1 cut(s) 324
BstSFI CTRYAG 1 cut(s) 162
BstV1I GCAGC 1 cut(s) 176
BstX2I RGATCY 3 cut(s) 69, 254, 368
BstYI RGATCY 3 cut(s) 69, 254, 368
BtrI CACGTC 1 cut(s) 197
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 2 cut(s) 159, 319
CaiI CAGNNNCTG 1 cut(s) 170
CciI TCATGA 1 cut(s) 337
Cfr13I GGNCC 1 cut(s) 353
Csp6I GTAC 4 cut(s) 6, 132, 176, 222
CspCI CAANNNNNGTGG 2 cut(s) 172, 207
CviAII CATG 2 cut(s) 122, 338
CviJI RGCY 4 cut(s) 23, 62, 167, 231
CviKI_1 RGCY 4 cut(s) 23, 62, 167, 231
CviQI GTAC 4 cut(s) 6, 132, 176, 222
DdeI CTNAG 2 cut(s) 57, 179
DpnI GATC 4 cut(s) 71, 204, 256, 370
DpnII GATC 4 cut(s) 69, 202, 254, 368
Eco130I CCWWGG 1 cut(s) 356
Eco47I GGWCC 1 cut(s) 353
Eco57I CTGAAG 1 cut(s) 258
Eco91I GGTNACC 1 cut(s) 324
EcoNI CCTNNNNNAGG 1 cut(s) 56
EcoO65I GGTNACC 1 cut(s) 324
EcoRI GAATTC 1 cut(s) 333
EcoT14I CCWWGG 1 cut(s) 356
ErhI CCWWGG 1 cut(s) 356
FaeI CATG 2 cut(s) 125, 341
FaiI YATR 4 cut(s) 92, 119, 123, 339
FaqI GGGAC 2 cut(s) 28, 283
FatI CATG 2 cut(s) 121, 337
Fnu4HI GCNGC 1 cut(s) 165
Fsp4HI GCNGC 1 cut(s) 165
FspBI CTAG 4 cut(s) 20, 228, 252, 357
GluI GCNGC 1 cut(s) 165
Hin1II CATG 2 cut(s) 125, 341
Hpy166II GTNNAC 3 cut(s) 176, 194, 353
Hpy188I TCNGA 2 cut(s) 74, 292
Hpy188III TCNNGA 1 cut(s) 338
Hpy8I GTNNAC 3 cut(s) 176, 194, 353
HpyCH4III ACNGT 2 cut(s) 136, 350
HpyCH4IV ACGT 1 cut(s) 196
HpyCH4V TGCA 2 cut(s) 14, 164
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpyF3I CTNAG 2 cut(s) 57, 179
HpySE526I ACGT 1 cut(s) 196
Hsp92II CATG 2 cut(s) 125, 341
Kzo9I GATC 4 cut(s) 69, 202, 254, 368
LmnI GCTCC 1 cut(s) 54
LpnPI CCDG 6 cut(s) 44, 59, 156, 204, 220, 307
Lsp1109I GCAGC 1 cut(s) 176
LweI GCATC 1 cut(s) 23
MaeI CTAG 4 cut(s) 20, 228, 252, 357
MaeII ACGT 1 cut(s) 196
MaeIII GTNAC 1 cut(s) 324
MalI GATC 4 cut(s) 71, 204, 256, 370
MboI GATC 4 cut(s) 69, 202, 254, 368
MflI RGATCY 3 cut(s) 69, 254, 368
MluCI AATT 2 cut(s) 240, 333
MseI TTAA 2 cut(s) 140, 243
MwoI GCNNNNNNNGC 1 cut(s) 20
NdeII GATC 4 cut(s) 69, 202, 254, 368
NlaIII CATG 2 cut(s) 125, 341
NlaIV GGNNCC 1 cut(s) 71
PagI TCATGA 1 cut(s) 337
PkrI GCNGC 1 cut(s) 166
PspEI GGTNACC 1 cut(s) 324
PspN4I GGNNCC 1 cut(s) 71
PspPI GGNCC 1 cut(s) 353
PstI CTGCAG 1 cut(s) 166
PstNI CAGNNNCTG 1 cut(s) 170
PsuI RGATCY 3 cut(s) 69, 254, 368
RsaI GTAC 4 cut(s) 7, 133, 177, 223
RsaNI GTAC 4 cut(s) 6, 132, 176, 222
SaqAI TTAA 2 cut(s) 140, 243
SatI GCNGC 1 cut(s) 165
Sau3AI GATC 4 cut(s) 69, 202, 254, 368
Sau96I GGNCC 1 cut(s) 353
ScaI AGTACT 2 cut(s) 7, 133
SetI ASST 6 cut(s) 25, 169, 199, 223, 233, 358
SfaNI GCATC 1 cut(s) 23
SfcI CTRYAG 1 cut(s) 162
SinI GGWCC 1 cut(s) 353
SmlI CTYRAG 1 cut(s) 63
SmoI CTYRAG 1 cut(s) 63
Sse9I AATT 2 cut(s) 240, 333
SspMI CTAG 4 cut(s) 20, 228, 252, 357
StyI CCWWGG 1 cut(s) 356
TaaI ACNGT 2 cut(s) 136, 350
TaiI ACGT 1 cut(s) 199
TasI AATT 2 cut(s) 240, 333
TatI WGTACW 3 cut(s) 5, 131, 175
Tru1I TTAA 2 cut(s) 140, 243
Tru9I TTAA 2 cut(s) 140, 243
TscAI CASTG 2 cut(s) 166, 326
TseI GCWGC 1 cut(s) 164
TspDTI ATGAA 2 cut(s) 326, 354
TspGWI ACGGA 1 cut(s) 276
TspRI CASTG 2 cut(s) 166, 326
VpaK11BI GGWCC 1 cut(s) 353
XagI CCTNNNNNAGG 1 cut(s) 56
XapI RAATTY 1 cut(s) 333
XmaJI CCTAGG 1 cut(s) 356
XspI CTAG 4 cut(s) 20, 228, 252, 357
ZrmI AGTACT 2 cut(s) 7, 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.