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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g01910 |
| malus_domestica | MD02G1017200.v1.1 MD15G1161600.v1.1 |
| prunus_persica | Prupe.7G256700_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr2g0086921 |
| rosa_laevigata | RLG00000015817 |
| rosa_multiflora | Rmu_sc0009060.1_g000007 |
| rosa_roxburghii | Rroxscaffold_2G00154000 |
| rosa_rugosa | Rorug01G0470700 Rorug01G0470700 Rorug01G0470800 Rorug01G0470900 Rorug01G0471000 Rorug01G0471000 |
| rosa_samantha | Rh2AG023500 Rh2BG024200 Rh2CG024400 Rh2DG024300 |
| rosa_wichuraiana | Rw2G001860 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1709 |
| Acc36I | ACCTGC | 1 cut(s) | 1709 |
| AccI | GTMKAC | 3 cut(s) | 900, 1628, 1641 |
| AccII | CGCG | 2 cut(s) | 359, 1623 |
| AciI | CCGC | 7 cut(s) | 210, 357, 359, 452, 692, 882, 1185 |
| AclWI | GGATC | 4 cut(s) | 52, 1077, 1160, 1544 |
| AcoI | YGGCCR | 2 cut(s) | 112, 1345 |
| AcuI | CTGAAG | 2 cut(s) | 327, 830 |
| AcyI | GRCGYC | 1 cut(s) | 678 |
| AfaI | GTAC | 9 cut(s) | 302, 545, 574, 724, 870, 940, 1189, 1433, 1521 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 458, 814, 1175, 1311 |
| AflIII | ACRYGT | 2 cut(s) | 1323, 1491 |
| AgsI | TTSAA | 5 cut(s) | 191, 1019, 1096, 1204, 1680 |
| AjnI | CCWGG | 1 cut(s) | 1276 |
| AleI | CACNNNNGTG | 1 cut(s) | 1469 |
| AluBI | AGCT | 4 cut(s) | 95, 410, 1416, 1568 |
| AluI | AGCT | 4 cut(s) | 95, 410, 1416, 1568 |
| Alw21I | GWGCWC | 1 cut(s) | 1276 |
| Alw26I | GTCTC | 5 cut(s) | 189, 192, 270, 490, 1003 |
| AlwI | GGATC | 4 cut(s) | 52, 1077, 1160, 1544 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 98 |
| AoxI | GGCC | 3 cut(s) | 112, 1345, 1560 |
| ApeKI | GCWGC | 2 cut(s) | 703, 1121 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1481 |
| AspLEI | GCGC | 2 cut(s) | 708, 820 |
| AspS9I | GGNCC | 2 cut(s) | 1214, 1436 |
| AsuC2I | CCSGG | 2 cut(s) | 1512, 1607 |
| AsuHPI | GGTGA | 6 cut(s) | 487, 502, 922, 1190, 1349, 1606 |
| AvaII | GGWCC | 2 cut(s) | 1214, 1436 |
| AxyI | CCTNAGG | 1 cut(s) | 629 |
| BalI | TGGCCA | 1 cut(s) | 1347 |
| BbsI | GAAGAC | 1 cut(s) | 499 |
| Bbv12I | GWGCWC | 1 cut(s) | 1276 |
| BbvI | GCAGC | 2 cut(s) | 715, 1108 |
| BccI | CCATC | 8 cut(s) | 74, 123, 146, 200, 306, 1102, 1175, 1549 |
| BceAI | ACGGC | 2 cut(s) | 16, 1382 |
| BciT130I | CCWGG | 1 cut(s) | 1278 |
| BcnI | CCSGG | 2 cut(s) | 1512, 1607 |
| BcoDI | GTCTC | 5 cut(s) | 189, 192, 270, 490, 1003 |
| BfaI | CTAG | 4 cut(s) | 62, 284, 468, 851 |
| BfmI | CTRYAG | 1 cut(s) | 99 |
| BfoI | RGCGCY | 1 cut(s) | 821 |
| BfuAI | ACCTGC | 1 cut(s) | 1709 |
| BisI | GCNGC | 3 cut(s) | 211, 704, 1122 |
| BlsI | GCNGC | 3 cut(s) | 212, 705, 1123 |
| Bme1390I | CCNGG | 3 cut(s) | 1278, 1512, 1607 |
| Bme18I | GGWCC | 2 cut(s) | 1214, 1436 |
| BmgT120I | GGNCC | 2 cut(s) | 1214, 1436 |
| BmiI | GGNNCC | 1 cut(s) | 363 |
| BmrFI | CCNGG | 3 cut(s) | 1278, 1512, 1607 |
| BmsI | GCATC | 2 cut(s) | 521, 979 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1506 |
| BpiI | GAAGAC | 1 cut(s) | 499 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 169, 201 |
| BpmI | CTGGAG | 1 cut(s) | 1260 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1564 |
| BpuMI | CCSGG | 2 cut(s) | 1512, 1607 |
| BsaAI | YACGTR | 1 cut(s) | 1324 |
| BsaHI | GRCGYC | 1 cut(s) | 678 |
| BsaI | GGTCTC | 2 cut(s) | 189, 270 |
| BsaJI | CCNNGG | 6 cut(s) | 357, 1002, 1084, 1277, 1305, 1729 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1258, 1288 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 458, 814, 1175, 1311 |
| Bse118I | RCCGGY | 1 cut(s) | 110 |
| Bse1I | ACTGG | 3 cut(s) | 296, 1229, 1348 |
| Bse21I | CCTNAGG | 1 cut(s) | 629 |
| Bse3DI | GCAATG | 1 cut(s) | 594 |
| BseBI | CCWGG | 1 cut(s) | 1278 |
| BseDI | CCNNGG | 6 cut(s) | 357, 1002, 1084, 1277, 1305, 1729 |
| BseGI | GGATG | 5 cut(s) | 317, 536, 969, 1012, 1054 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 458, 814, 1175, 1311 |
| BseMI | GCAATG | 1 cut(s) | 594 |
| BseMII | CTCAG | 1 cut(s) | 643 |
| BseNI | ACTGG | 3 cut(s) | 296, 1229, 1348 |
| BseRI | GAGGAG | 3 cut(s) | 61, 193, 956 |
| BseXI | GCAGC | 2 cut(s) | 715, 1108 |
| BsgI | GTGCAG | 1 cut(s) | 1447 |
| Bsh1236I | CGCG | 2 cut(s) | 359, 1623 |
| BshFI | GGCC | 3 cut(s) | 114, 1347, 1562 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1276 |
| BsiSI | CCGG | 3 cut(s) | 111, 1512, 1606 |
| BslFI | GGGAC | 1 cut(s) | 1494 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 458, 814, 1175, 1311 |
| BsmAI | GTCTC | 5 cut(s) | 189, 192, 270, 490, 1003 |
| BsmBI | CGTCTC | 2 cut(s) | 192, 490 |
| BsmFI | GGGAC | 1 cut(s) | 1494 |
| BsnI | GGCC | 3 cut(s) | 114, 1347, 1562 |
| Bso31I | GGTCTC | 2 cut(s) | 189, 270 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1276 |
| Bsp1407I | TGTACA | 2 cut(s) | 543, 938 |
| Bsp19I | CCATGG | 2 cut(s) | 1002, 1729 |
| BspACI | CCGC | 7 cut(s) | 210, 357, 359, 452, 692, 882, 1185 |
| BspANI | GGCC | 3 cut(s) | 114, 1347, 1562 |
| BspCNI | CTCAG | 1 cut(s) | 642 |
| BspFNI | CGCG | 2 cut(s) | 359, 1623 |
| BspLI | GGNNCC | 1 cut(s) | 363 |
| BspMAI | CTGCAG | 1 cut(s) | 103 |
| BspMI | ACCTGC | 1 cut(s) | 1709 |
| BspPI | GGATC | 4 cut(s) | 52, 1077, 1160, 1544 |
| BspTNI | GGTCTC | 2 cut(s) | 189, 270 |
| BsrDI | GCAATG | 1 cut(s) | 594 |
| BsrFI | RCCGGY | 1 cut(s) | 110 |
| BsrGI | TGTACA | 2 cut(s) | 543, 938 |
| BsrI | ACTGG | 3 cut(s) | 296, 1229, 1348 |
| BssAI | RCCGGY | 1 cut(s) | 110 |
| BssECI | CCNNGG | 6 cut(s) | 357, 1002, 1084, 1277, 1305, 1729 |
| BssNAI | GTATAC | 2 cut(s) | 901, 1629 |
| BssNI | GRCGYC | 1 cut(s) | 678 |
| BssT1I | CCWWGG | 3 cut(s) | 1002, 1084, 1729 |
| Bst1107I | GTATAC | 2 cut(s) | 901, 1629 |
| Bst2UI | CCWGG | 1 cut(s) | 1278 |
| Bst4CI | ACNGT | 6 cut(s) | 572, 838, 1425, 1436, 1639, 1691 |
| Bst6I | CTCTTC | 1 cut(s) | 268 |
| BstACI | GRCGYC | 1 cut(s) | 678 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 700 |
| BstAUI | TGTACA | 2 cut(s) | 543, 938 |
| BstBAI | YACGTR | 1 cut(s) | 1324 |
| BstDEI | CTNAG | 5 cut(s) | 255, 629, 1564, 1632, 1714 |
| BstDSI | CCRYGG | 3 cut(s) | 357, 1002, 1729 |
| BstF5I | GGATG | 5 cut(s) | 317, 536, 969, 1012, 1054 |
| BstFNI | CGCG | 2 cut(s) | 359, 1623 |
| BstH2I | RGCGCY | 1 cut(s) | 821 |
| BstHHI | GCGC | 2 cut(s) | 708, 820 |
| BstMAI | GTCTC | 5 cut(s) | 189, 192, 270, 490, 1003 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 356, 605, 700, 1040, 1118, 1454 |
| BstNI | CCWGG | 1 cut(s) | 1278 |
| BstNSI | RCATGY | 3 cut(s) | 996, 1093, 1495 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1506 |
| BstSCI | CCNGG | 3 cut(s) | 1276, 1510, 1605 |
| BstSFI | CTRYAG | 1 cut(s) | 99 |
| BstUI | CGCG | 2 cut(s) | 359, 1623 |
| BstV1I | GCAGC | 2 cut(s) | 715, 1108 |
| BstV2I | GAAGAC | 1 cut(s) | 499 |
| BstX2I | RGATCY | 1 cut(s) | 1536 |
| BstYI | RGATCY | 1 cut(s) | 1536 |
| BstZ17I | GTATAC | 2 cut(s) | 901, 1629 |
| Bsu36I | CCTNAGG | 1 cut(s) | 629 |
| BsuRI | GGCC | 3 cut(s) | 114, 1347, 1562 |
| BtgI | CCRYGG | 3 cut(s) | 357, 1002, 1729 |
| BtgZI | GCGATG | 1 cut(s) | 1604 |
| BtsCI | GGATG | 5 cut(s) | 317, 536, 969, 1012, 1054 |
| BtsI | GCAGTG | 1 cut(s) | 1741 |
| BtsIMutI | CAGTG | 4 cut(s) | 289, 1355, 1696, 1741 |
| BveI | ACCTGC | 1 cut(s) | 1709 |
| CaiI | CAGNNNCTG | 1 cut(s) | 98 |
| CfoI | GCGC | 2 cut(s) | 708, 820 |
| Cfr10I | RCCGGY | 1 cut(s) | 110 |
| Cfr13I | GGNCC | 2 cut(s) | 1214, 1436 |
| Cfr42I | CCGCGG | 1 cut(s) | 360 |
| CseI | GACGC | 3 cut(s) | 406, 472, 686 |
| Csp6I | GTAC | 9 cut(s) | 301, 544, 573, 723, 869, 939, 1188, 1432, 1520 |
| CviQI | GTAC | 9 cut(s) | 301, 544, 573, 723, 869, 939, 1188, 1432, 1520 |
| DdeI | CTNAG | 5 cut(s) | 255, 629, 1564, 1632, 1714 |
| EaeI | YGGCCR | 2 cut(s) | 112, 1345 |
| Eam1104I | CTCTTC | 1 cut(s) | 268 |
| EarI | CTCTTC | 1 cut(s) | 268 |
| Eco130I | CCWWGG | 3 cut(s) | 1002, 1084, 1729 |
| Eco31I | GGTCTC | 2 cut(s) | 189, 270 |
| Eco47I | GGWCC | 2 cut(s) | 1214, 1436 |
| Eco57I | CTGAAG | 2 cut(s) | 327, 830 |
| Eco81I | CCTNAGG | 1 cut(s) | 629 |
| EcoRII | CCWGG | 1 cut(s) | 1276 |
| EcoT14I | CCWWGG | 3 cut(s) | 1002, 1084, 1729 |
| EcoT22I | ATGCAT | 2 cut(s) | 536, 994 |
| ErhI | CCWWGG | 3 cut(s) | 1002, 1084, 1729 |
| Esp3I | CGTCTC | 2 cut(s) | 192, 490 |
| FaqI | GGGAC | 1 cut(s) | 1494 |
| FblI | GTMKAC | 3 cut(s) | 900, 1628, 1641 |
| Fnu4HI | GCNGC | 3 cut(s) | 211, 704, 1122 |
| FokI | GGATG | 5 cut(s) | 324, 543, 956, 1019, 1061 |
| Fsp4HI | GCNGC | 3 cut(s) | 211, 704, 1122 |
| FspBI | CTAG | 4 cut(s) | 62, 284, 468, 851 |
| GlaI | GCGC | 2 cut(s) | 707, 819 |
| GluI | GCNGC | 3 cut(s) | 211, 704, 1122 |
| GsuI | CTGGAG | 1 cut(s) | 1260 |
| HaeII | RGCGCY | 1 cut(s) | 821 |
| HaeIII | GGCC | 3 cut(s) | 114, 1347, 1562 |
| HapII | CCGG | 3 cut(s) | 111, 1512, 1606 |
| HgaI | GACGC | 3 cut(s) | 406, 472, 686 |
| HhaI | GCGC | 2 cut(s) | 708, 820 |
| Hin1I | GRCGYC | 1 cut(s) | 678 |
| Hin6I | GCGC | 2 cut(s) | 706, 818 |
| HinP1I | GCGC | 2 cut(s) | 706, 818 |
| HinfI | GANTC | 6 cut(s) | 653, 770, 925, 1340, 1355, 1372 |
| HpaII | CCGG | 3 cut(s) | 111, 1512, 1606 |
| HphI | GGTGA | 6 cut(s) | 487, 502, 922, 1190, 1349, 1606 |
| Hpy166II | GTNNAC | 6 cut(s) | 546, 901, 1497, 1629, 1642, 1754 |
| Hpy188I | TCNGA | 3 cut(s) | 643, 760, 1266 |
| Hpy8I | GTNNAC | 6 cut(s) | 546, 901, 1497, 1629, 1642, 1754 |
| Hpy99I | CGWCG | 5 cut(s) | 37, 218, 221, 1151, 1617 |
| HpyAV | CCTTC | 5 cut(s) | 85, 168, 188, 857, 1067 |
| HpyCH4III | ACNGT | 6 cut(s) | 572, 838, 1425, 1436, 1639, 1691 |
| HpyCH4IV | ACGT | 1 cut(s) | 1323 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 356, 605, 700, 1040, 1118, 1454 |
| HpyF3I | CTNAG | 5 cut(s) | 255, 629, 1564, 1632, 1714 |
| HpySE526I | ACGT | 1 cut(s) | 1323 |
| Hsp92I | GRCGYC | 1 cut(s) | 678 |
| HspAI | GCGC | 2 cut(s) | 706, 818 |
| KspI | CCGCGG | 1 cut(s) | 360 |
| LmnI | GCTCC | 4 cut(s) | 825, 849, 1279, 1609 |
| Lsp1109I | GCAGC | 2 cut(s) | 715, 1108 |
| LweI | GCATC | 2 cut(s) | 521, 979 |
| MaeI | CTAG | 4 cut(s) | 62, 284, 468, 851 |
| MaeII | ACGT | 1 cut(s) | 1323 |
| MaeIII | GTNAC | 6 cut(s) | 431, 493, 613, 931, 1300, 1393 |
| MfeI | CAATTG | 2 cut(s) | 522, 1467 |
| MflI | RGATCY | 1 cut(s) | 1536 |
| MhlI | GDGCHC | 1 cut(s) | 1276 |
| MlsI | TGGCCA | 1 cut(s) | 1347 |
| MluCI | AATT | 5 cut(s) | 143, 522, 711, 1171, 1467 |
| MluNI | TGGCCA | 1 cut(s) | 1347 |
| MlyI | GAGTC | 2 cut(s) | 647, 1366 |
| Mox20I | TGGCCA | 1 cut(s) | 1347 |
| Mph1103I | ATGCAT | 2 cut(s) | 536, 994 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1481 |
| MscI | TGGCCA | 1 cut(s) | 1347 |
| MseI | TTAA | 2 cut(s) | 146, 1137 |
| MslI | CAYNNNNRTG | 5 cut(s) | 515, 1106, 1469, 1490, 1734 |
| Msp20I | TGGCCA | 1 cut(s) | 1347 |
| MspA1I | CMGCKG | 1 cut(s) | 359 |
| MspI | CCGG | 3 cut(s) | 111, 1512, 1606 |
| MspR9I | CCNGG | 3 cut(s) | 1278, 1512, 1607 |
| MunI | CAATTG | 2 cut(s) | 522, 1467 |
| MvaI | CCWGG | 1 cut(s) | 1278 |
| MvnI | CGCG | 2 cut(s) | 359, 1623 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 356, 605, 700, 1040, 1118, 1454 |
| NciI | CCSGG | 2 cut(s) | 1512, 1607 |
| NcoI | CCATGG | 2 cut(s) | 1002, 1729 |
| NlaIV | GGNNCC | 1 cut(s) | 363 |
| NmuCI | GTSAC | 2 cut(s) | 493, 1393 |
| NsiI | ATGCAT | 2 cut(s) | 536, 994 |
| NspI | RCATGY | 3 cut(s) | 996, 1093, 1495 |
| OliI | CACNNNNGTG | 1 cut(s) | 1469 |
| PaqCI | CACCTGC | 1 cut(s) | 1709 |
| PciI | ACATGT | 1 cut(s) | 1491 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1481 |
| PfeI | GAWTC | 4 cut(s) | 770, 925, 1340, 1355 |
| PkrI | GCNGC | 3 cut(s) | 212, 705, 1123 |
| PleI | GAGTC | 2 cut(s) | 647, 1366 |
| PpsI | GAGTC | 2 cut(s) | 647, 1366 |
| Ppu21I | YACGTR | 1 cut(s) | 1324 |
| PscI | ACATGT | 1 cut(s) | 1491 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1506 |
| Psp6I | CCWGG | 1 cut(s) | 1276 |
| PspGI | CCWGG | 1 cut(s) | 1276 |
| PspN4I | GGNNCC | 1 cut(s) | 363 |
| PspPI | GGNCC | 2 cut(s) | 1214, 1436 |
| PstI | CTGCAG | 1 cut(s) | 103 |
| PstNI | CAGNNNCTG | 1 cut(s) | 98 |
| PsuI | RGATCY | 1 cut(s) | 1536 |
| RsaI | GTAC | 9 cut(s) | 302, 545, 574, 724, 870, 940, 1189, 1433, 1521 |
| RsaNI | GTAC | 9 cut(s) | 301, 544, 573, 723, 869, 939, 1188, 1432, 1520 |
| RseI | CAYNNNNRTG | 5 cut(s) | 515, 1106, 1469, 1490, 1734 |
| SacII | CCGCGG | 1 cut(s) | 360 |
| SaqAI | TTAA | 2 cut(s) | 146, 1137 |
| SatI | GCNGC | 3 cut(s) | 211, 704, 1122 |
| Sau96I | GGNCC | 2 cut(s) | 1214, 1436 |
| SchI | GAGTC | 2 cut(s) | 647, 1366 |
| ScrFI | CCNGG | 3 cut(s) | 1278, 1512, 1607 |
| SduI | GDGCHC | 1 cut(s) | 1276 |
| SfaNI | GCATC | 2 cut(s) | 521, 979 |
| SfcI | CTRYAG | 1 cut(s) | 99 |
| Sfr303I | CCGCGG | 1 cut(s) | 360 |
| SgrBI | CCGCGG | 1 cut(s) | 360 |
| SinI | GGWCC | 2 cut(s) | 1214, 1436 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 515, 1106, 1469, 1490, 1734 |
| Sse9I | AATT | 5 cut(s) | 143, 522, 711, 1171, 1467 |
| SsiI | CCGC | 7 cut(s) | 210, 357, 359, 452, 692, 882, 1185 |
| SspMI | CTAG | 4 cut(s) | 62, 284, 468, 851 |
| StyD4I | CCNGG | 3 cut(s) | 1276, 1510, 1605 |
| StyI | CCWWGG | 3 cut(s) | 1002, 1084, 1729 |
| TaaI | ACNGT | 6 cut(s) | 572, 838, 1425, 1436, 1639, 1691 |
| TaiI | ACGT | 1 cut(s) | 1326 |
| TaqI | TCGA | 6 cut(s) | 35, 651, 659, 773, 1149, 1386 |
| TasI | AATT | 5 cut(s) | 143, 522, 711, 1171, 1467 |
| TatI | WGTACW | 5 cut(s) | 300, 543, 572, 868, 938 |
| TauI | GCSGC | 1 cut(s) | 213 |
| TfiI | GAWTC | 4 cut(s) | 770, 925, 1340, 1355 |
| Tru1I | TTAA | 2 cut(s) | 146, 1137 |
| Tru9I | TTAA | 2 cut(s) | 146, 1137 |
| TscAI | CASTG | 4 cut(s) | 296, 1355, 1696, 1741 |
| TseFI | GTSAC | 2 cut(s) | 493, 1393 |
| TseI | GCWGC | 2 cut(s) | 703, 1121 |
| Tsp45I | GTSAC | 2 cut(s) | 493, 1393 |
| TspDTI | ATGAA | 3 cut(s) | 249, 361, 934 |
| TspGWI | ACGGA | 4 cut(s) | 216, 234, 1434, 1502 |
| TspRI | CASTG | 4 cut(s) | 296, 1355, 1696, 1741 |
| VpaK11BI | GGWCC | 2 cut(s) | 1214, 1436 |
| XbaI | TCTAGA | 2 cut(s) | 283, 467 |
| XceI | RCATGY | 3 cut(s) | 996, 1093, 1495 |
| XmiI | GTMKAC | 3 cut(s) | 900, 1628, 1641 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1481 |
| XspI | CTAG | 4 cut(s) | 62, 284, 468, 851 |
| Zsp2I | ATGCAT | 2 cut(s) | 536, 994 |