Rh2DG024300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0012554
Physical Location & Seq
Forward (+)
1434358 .. 1438564
4207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG024300.1

Sequence Viewer

Length: 1362 bp
ATGGCAATTGCTGGATGCGTTGTGCTGTACATGGGTCAGGGATTGTTCTACGACAGTACAAGAAAGACATTGGATTACCTTGTGAAGGAGGCAGATGAAACTGCTCAAAACCTCAGGAATGTGTCAGATTCTCTTAGCGCAGCTAAGAAGATCGGACTTGACGCCATAGTTCCTCCGACAGATATTCAGAATCAAATTGACGAGGGTATGGGAACAATACAGTATGTTTCCAATTTTCTTTCTGAAACAACTGATAAGACTGCACGGAAGTCAAATCAAGTCTTAACAGACTTGAAGCTGGCGCTCATGGTTTTTTCTGCTGTTATGCTCCTTCTGGTCTTTATTGGATTTGCACTTTCCATGTGCGGGATGCGATTTCTTGTATACTGCTTGGTGATTGTTGGGTGGATTCTTGTTACCTGTGCATTCATCTTGTGCGGTACATTTCTCCTCATCCATAATGCGTTTGGAGATGCATGTGTCTCCATGGATGAGTGGATTCAAAAGCACCCCACAGCCCACACTGCTTTGGATGATCTACTTCCATGCGTGGACAAAAATGTAAGCCAGAGCATGTTGGAACGGACCAAGATGGCAACCTACTTTGCTGTTGAAGCGGTTAATCGTGTCATCACCGATGGTGCAAATCTTGATCCTTCTGACAGTCCATTAAATTACAATCAGTCTGGCCCTTTATTACCACCAGTCTGCAACCCCTTTAATGAGGATAAAACTGATCGGAAATGTGTTCCTGGTGAAGTGGAATTGCAACAAGCACAAGAGGTATGGCAGAAATACGTATGTAAGGTTTCTAGTCCAACCAGCCAGTGTGTATCACCAGGGCGGCTGACTCCTACCTACTTCGATCAAATGTCAGCTTTTGTAAATGTGAGCAACGCACTGTATCGGTACAGTCCATTCTTTGCTGATCTTGCAGACTGCACATTTGCTAAGGATACATTCTCGGACATAAGTAAACAGCATTGTCCCGGTCTGCGACTACATAGTAAATGGATCTACATTGGCTTGTTAATGGTAGCCTTAGCTGTAATGTTGTCTATGATCTTCTGGGTGATTTACTGCCGGGAACGAAGACATCGCGTGTATACTAAAAAATGTGACAGTTTACACTATGACAGTTTAAACTATGGCAGTGCAAATCATGGCAGCAGAAACTTTGGCAGTGCAAATCATGGCAGCAGAAACTTTGGCAGTGGAAATCATGGCAGTAGAAACTTTGGCAGCCCAAATCATGGCAGTAGAAACTTTGGCAGTGGAAATCATGGCAGTGGAAACTTTGGCCCAAATCATGGCAGTAGAAACTTTGGCAGTGGAAACTTTGGCAGTGCAAATACTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

453

Amino Acids

49.89

Weight (kDa)

7.16

Isoelectric Point (pI)

31.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pentapeptide_2 PF01469 382 - 420 4.1e-09 Pentapeptide repeats (8 copies)
Pentapeptide_2 PF01469 402 - 434 6e-07 Pentapeptide repeats (8 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 1253, 1310
AccI GTMKAC 2 cut(s) 384, 1106
AccII CGCG 1 cut(s) 1101
AciI CCGC 4 cut(s) 366, 438, 617, 844
AclWI GGATC 2 cut(s) 647, 1022
AcyI GRCGYC 1 cut(s) 162
AfaI GTAC 4 cut(s) 29, 58, 442, 911
AfiI CCNNNNNNNGG 4 cut(s) 85, 366, 1253, 1310
AgsI TTSAA 3 cut(s) 295, 503, 614
AjnI CCWGG 2 cut(s) 751, 838
AluBI AGCT 4 cut(s) 143, 298, 878, 1046
AluI AGCT 4 cut(s) 143, 298, 878, 1046
Alw26I GTCTC 1 cut(s) 487
AlwI GGATC 2 cut(s) 647, 1022
AoxI GGCC 2 cut(s) 688, 1300
ApeKI GCWGC 4 cut(s) 140, 1167, 1197, 1242
ArsI GACNNNNNNTTYG 2 cut(s) 929, 961
AspLEI GCGC 2 cut(s) 140, 304
AspS9I GGNCC 3 cut(s) 585, 689, 1301
AsuC2I CCSGG 2 cut(s) 990, 1085
AsuHPI GGTGA 5 cut(s) 406, 625, 767, 828, 1084
AvaII GGWCC 1 cut(s) 585
AxyI CCTNAGG 1 cut(s) 113
BbsI GAAGAC 1 cut(s) 1099
BbvI GCAGC 4 cut(s) 152, 1179, 1209, 1254
BccI CCATC 2 cut(s) 586, 632
BciT130I CCWGG 2 cut(s) 753, 840
BciVI GTATCC 1 cut(s) 949
BcnI CCSGG 2 cut(s) 990, 1085
BcoDI GTCTC 1 cut(s) 487
BfaI CTAG 1 cut(s) 813
BfoI RGCGCY 1 cut(s) 305
BfuI GTATCC 1 cut(s) 949
BisI GCNGC 5 cut(s) 141, 845, 1168, 1198, 1243
BlsI GCNGC 5 cut(s) 142, 846, 1169, 1199, 1244
Bme1390I CCNGG 4 cut(s) 753, 840, 990, 1085
Bme18I GGWCC 1 cut(s) 585
BmgT120I GGNCC 3 cut(s) 585, 689, 1301
BmrFI CCNGG 4 cut(s) 753, 840, 990, 1085
BmsI GCATC 3 cut(s) 5, 360, 463
BpiI GAAGAC 1 cut(s) 1099
Bpu10I CCTNAGC 2 cut(s) 951, 1042
BpuMI CCSGG 2 cut(s) 990, 1085
BsaAI YACGTR 1 cut(s) 799
BsaHI GRCGYC 1 cut(s) 162
BsaJI CCNNGG 2 cut(s) 486, 839
Bsc4I CCNNNNNNNGG 4 cut(s) 85, 366, 1253, 1310
Bse1I ACTGG 3 cut(s) 704, 826, 1360
Bse21I CCTNAGG 1 cut(s) 113
BseBI CCWGG 2 cut(s) 753, 840
BseDI CCNNGG 2 cut(s) 486, 839
BseGI GGATG 5 cut(s) 20, 375, 453, 496, 538
BseLI CCNNNNNNNGG 4 cut(s) 85, 366, 1253, 1310
BseMII CTCAG 1 cut(s) 127
BseNI ACTGG 3 cut(s) 704, 826, 1360
BseRI GAGGAG 1 cut(s) 440
BseXI GCAGC 4 cut(s) 152, 1179, 1209, 1254
BsgI GTGCAG 2 cut(s) 246, 925
Bsh1236I CGCG 1 cut(s) 1101
BshFI GGCC 2 cut(s) 690, 1302
BsiSI CCGG 2 cut(s) 990, 1084
BslFI GGGAC 1 cut(s) 972
BslI CCNNNNNNNGG 4 cut(s) 85, 366, 1253, 1310
BsmAI GTCTC 1 cut(s) 487
BsmFI GGGAC 1 cut(s) 972
BsmI GAATGC 1 cut(s) 425
BsnI GGCC 2 cut(s) 690, 1302
Bsp1407I TGTACA 1 cut(s) 27
Bsp143I GATC 8 cut(s) 150, 535, 652, 736, 865, 928, 1014, 1062
Bsp19I CCATGG 1 cut(s) 486
BspACI CCGC 4 cut(s) 366, 438, 617, 844
BspANI GGCC 2 cut(s) 690, 1302
BspCNI CTCAG 1 cut(s) 126
BspFNI CGCG 1 cut(s) 1101
BspPI GGATC 2 cut(s) 647, 1022
BsrGI TGTACA 1 cut(s) 27
BsrI ACTGG 3 cut(s) 704, 826, 1360
BssECI CCNNGG 2 cut(s) 486, 839
BssMI GATC 8 cut(s) 150, 535, 652, 736, 865, 928, 1014, 1062
BssNAI GTATAC 2 cut(s) 385, 1107
BssNI GRCGYC 1 cut(s) 162
BssT1I CCWWGG 1 cut(s) 486
Bst1107I GTATAC 2 cut(s) 385, 1107
Bst2UI CCWGG 2 cut(s) 753, 840
Bst4CI ACNGT 7 cut(s) 56, 222, 665, 903, 914, 1124, 1139
BstACI GRCGYC 1 cut(s) 162
BstAUI TGTACA 1 cut(s) 27
BstBAI YACGTR 1 cut(s) 799
BstC8I GCNNGC 1 cut(s) 300
BstDEI CTNAG 5 cut(s) 113, 134, 144, 951, 1042
BstDSI CCRYGG 1 cut(s) 486
BstENI CCTNNNNNAGG 1 cut(s) 83
BstF5I GGATG 5 cut(s) 20, 375, 453, 496, 538
BstFNI CGCG 1 cut(s) 1101
BstH2I RGCGCY 1 cut(s) 305
BstHHI GCGC 2 cut(s) 140, 304
BstKTI GATC 8 cut(s) 153, 538, 655, 739, 868, 931, 1017, 1065
BstMAI GTCTC 1 cut(s) 487
BstMBI GATC 8 cut(s) 150, 535, 652, 736, 865, 928, 1014, 1062
BstMWI GCNNNNNNNGC 3 cut(s) 524, 614, 932
BstNI CCWGG 2 cut(s) 753, 840
BstNSI RCATGY 2 cut(s) 480, 577
BstSCI CCNGG 4 cut(s) 751, 838, 988, 1083
BstSNI TACGTA 1 cut(s) 799
BstUI CGCG 1 cut(s) 1101
BstV1I GCAGC 4 cut(s) 152, 1179, 1209, 1254
BstV2I GAAGAC 1 cut(s) 1099
BstX2I RGATCY 1 cut(s) 1014
BstYI RGATCY 1 cut(s) 1014
BstZ17I GTATAC 2 cut(s) 385, 1107
Bsu36I CCTNAGG 1 cut(s) 113
BsuI GTATCC 1 cut(s) 949
BsuRI GGCC 2 cut(s) 690, 1302
BtgI CCRYGG 1 cut(s) 486
BtgZI GCGATG 1 cut(s) 1082
BtsCI GGATG 5 cut(s) 20, 375, 453, 496, 538
BtsI GCAGTG 8 cut(s) 522, 1159, 1189, 1219, 1279, 1294, 1336, 1351
Cac8I GCNNGC 1 cut(s) 300
CfoI GCGC 2 cut(s) 140, 304
Cfr13I GGNCC 3 cut(s) 585, 689, 1301
CseI GACGC 1 cut(s) 170
Csp6I GTAC 4 cut(s) 28, 57, 441, 910
CviQI GTAC 4 cut(s) 28, 57, 441, 910
DdeI CTNAG 5 cut(s) 113, 134, 144, 951, 1042
DpnI GATC 8 cut(s) 152, 537, 654, 738, 867, 930, 1016, 1064
DpnII GATC 8 cut(s) 150, 535, 652, 736, 865, 928, 1014, 1062
DraI TTTAAA 1 cut(s) 1143
Eco105I TACGTA 1 cut(s) 799
Eco130I CCWWGG 1 cut(s) 486
Eco47I GGWCC 1 cut(s) 585
Eco81I CCTNAGG 1 cut(s) 113
EcoNI CCTNNNNNAGG 1 cut(s) 83
EcoRII CCWGG 2 cut(s) 751, 838
EcoT14I CCWWGG 1 cut(s) 486
EcoT22I ATGCAT 1 cut(s) 478
ErhI CCWWGG 1 cut(s) 486
FaqI GGGAC 1 cut(s) 972
FauI CCCGC 1 cut(s) 359
FblI GTMKAC 2 cut(s) 384, 1106
Fnu4HI GCNGC 5 cut(s) 141, 845, 1168, 1198, 1243
FokI GGATG 5 cut(s) 27, 382, 440, 503, 545
Fsp4HI GCNGC 5 cut(s) 141, 845, 1168, 1198, 1243
FspBI CTAG 1 cut(s) 813
GlaI GCGC 2 cut(s) 139, 303
GluI GCNGC 5 cut(s) 141, 845, 1168, 1198, 1243
HaeII RGCGCY 1 cut(s) 305
HaeIII GGCC 2 cut(s) 690, 1302
HapII CCGG 2 cut(s) 990, 1084
HgaI GACGC 1 cut(s) 170
HhaI GCGC 2 cut(s) 140, 304
Hin1I GRCGYC 1 cut(s) 162
Hin6I GCGC 2 cut(s) 138, 302
HinP1I GCGC 2 cut(s) 138, 302
HinfI GANTC 5 cut(s) 128, 190, 409, 499, 850
HpaII CCGG 2 cut(s) 990, 1084
HphI GGTGA 5 cut(s) 406, 625, 767, 828, 1084
Hpy166II GTNNAC 5 cut(s) 385, 553, 977, 1107, 1127
Hpy188I TCNGA 8 cut(s) 127, 155, 177, 189, 244, 661, 741, 967
Hpy188III TCNNGA 2 cut(s) 115, 650
Hpy8I GTNNAC 5 cut(s) 385, 553, 977, 1107, 1127
HpyAV CCTTC 3 cut(s) 79, 341, 666
HpyCH4III ACNGT 7 cut(s) 56, 222, 665, 903, 914, 1124, 1139
HpyCH4IV ACGT 1 cut(s) 798
HpyF10VI GCNNNNNNNGC 3 cut(s) 524, 614, 932
HpyF3I CTNAG 5 cut(s) 113, 134, 144, 951, 1042
HpySE526I ACGT 1 cut(s) 798
Hsp92I GRCGYC 1 cut(s) 162
HspAI GCGC 2 cut(s) 138, 302
Kzo9I GATC 8 cut(s) 150, 535, 652, 736, 865, 928, 1014, 1062
LmnI GCTCC 1 cut(s) 333
Lsp1109I GCAGC 4 cut(s) 152, 1179, 1209, 1254
LweI GCATC 3 cut(s) 5, 360, 463
MaeI CTAG 1 cut(s) 813
MaeII ACGT 1 cut(s) 798
MaeIII GTNAC 2 cut(s) 415, 1118
MalI GATC 8 cut(s) 152, 537, 654, 738, 867, 930, 1016, 1064
MboI GATC 8 cut(s) 150, 535, 652, 736, 865, 928, 1014, 1062
MboII GAAGA 3 cut(s) 160, 1057, 1104
MfeI CAATTG 1 cut(s) 6
MflI RGATCY 1 cut(s) 1014
MluCI AATT 5 cut(s) 6, 195, 232, 673, 764
MlyI GAGTC 1 cut(s) 844
MmeI TCCRAC 3 cut(s) 200, 558, 842
MnlI CCTC 7 cut(s) 82, 122, 183, 196, 461, 718, 775
Mph1103I ATGCAT 1 cut(s) 478
MseI TTAA 6 cut(s) 284, 621, 671, 720, 1031, 1142
MslI CAYNNNNRTG 1 cut(s) 1287
MspI CCGG 2 cut(s) 990, 1084
MspR9I CCNGG 4 cut(s) 753, 840, 990, 1085
MssI GTTTAAAC 1 cut(s) 1143
MunI CAATTG 1 cut(s) 6
Mva1269I GAATGC 1 cut(s) 425
MvaI CCWGG 2 cut(s) 753, 840
MvnI CGCG 1 cut(s) 1101
MwoI GCNNNNNNNGC 3 cut(s) 524, 614, 932
NciI CCSGG 2 cut(s) 990, 1085
NcoI CCATGG 1 cut(s) 486
NdeII GATC 8 cut(s) 150, 535, 652, 736, 865, 928, 1014, 1062
NmuCI GTSAC 1 cut(s) 1118
NsiI ATGCAT 1 cut(s) 478
NspI RCATGY 2 cut(s) 480, 577
PctI GAATGC 1 cut(s) 425
PfeI GAWTC 4 cut(s) 128, 190, 409, 499
PflMI CCANNNNNTGG 2 cut(s) 1253, 1310
PkrI GCNGC 5 cut(s) 142, 846, 1169, 1199, 1244
PleI GAGTC 1 cut(s) 844
PmeI GTTTAAAC 1 cut(s) 1143
PpsI GAGTC 1 cut(s) 844
Ppu21I YACGTR 1 cut(s) 799
Psp6I CCWGG 2 cut(s) 751, 838
PspGI CCWGG 2 cut(s) 751, 838
PspPI GGNCC 3 cut(s) 585, 689, 1301
PsuI RGATCY 1 cut(s) 1014
RsaI GTAC 4 cut(s) 29, 58, 442, 911
RsaNI GTAC 4 cut(s) 28, 57, 441, 910
RseI CAYNNNNRTG 1 cut(s) 1287
SaqAI TTAA 6 cut(s) 284, 621, 671, 720, 1031, 1142
SatI GCNGC 5 cut(s) 141, 845, 1168, 1198, 1243
Sau3AI GATC 8 cut(s) 150, 535, 652, 736, 865, 928, 1014, 1062
Sau96I GGNCC 3 cut(s) 585, 689, 1301
SchI GAGTC 1 cut(s) 844
ScrFI CCNGG 4 cut(s) 753, 840, 990, 1085
SfaNI GCATC 3 cut(s) 5, 360, 463
SinI GGWCC 1 cut(s) 585
SmiMI CAYNNNNRTG 1 cut(s) 1287
SnaBI TACGTA 1 cut(s) 799
Sse9I AATT 5 cut(s) 6, 195, 232, 673, 764
SsiI CCGC 4 cut(s) 366, 438, 617, 844
SspMI CTAG 1 cut(s) 813
StyD4I CCNGG 4 cut(s) 751, 838, 988, 1083
StyI CCWWGG 1 cut(s) 486
TaaI ACNGT 7 cut(s) 56, 222, 665, 903, 914, 1124, 1139
TaiI ACGT 1 cut(s) 801
TaqI TCGA 1 cut(s) 864
TasI AATT 5 cut(s) 6, 195, 232, 673, 764
TatI WGTACW 2 cut(s) 27, 56
TauI GCSGC 1 cut(s) 847
TfiI GAWTC 4 cut(s) 128, 190, 409, 499
Tru1I TTAA 6 cut(s) 284, 621, 671, 720, 1031, 1142
Tru9I TTAA 6 cut(s) 284, 621, 671, 720, 1031, 1142
TseFI GTSAC 1 cut(s) 1118
TseI GCWGC 4 cut(s) 140, 1167, 1197, 1242
Tsp45I GTSAC 1 cut(s) 1118
TspDTI ATGAA 2 cut(s) 111, 418
TspGWI ACGGA 2 cut(s) 280, 598
Van91I CCANNNNNTGG 2 cut(s) 1253, 1310
VpaK11BI GGWCC 1 cut(s) 585
XagI CCTNNNNNAGG 1 cut(s) 83
XceI RCATGY 2 cut(s) 480, 577
XcmI CCANNNNNNNNNTGG 1 cut(s) 464
XmiI GTMKAC 2 cut(s) 384, 1106
XspI CTAG 1 cut(s) 813
Zsp2I ATGCAT 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.