Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0012554

Physical Location & Seq

Genomic Coordinates Reverse (-)

56225069 .. 56229083

Gene Structure 4015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0471000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1617 bp

ATGGAGAACTCCCAAGAGAGTATGGTAGAGCATTGGACACAAGAGGCTGCAAAGGAGAAACCATTCCTTCAAGTATGGAAGAGGATATTTGCAGTATCATGTGTGTTTTCTGTCTTACTGGATCCTTTGTTTTTGTACATTCCTATAGTTAACGAGGATATGAAGTGTCTCAGATTGGAAAACAAGTTGATGAAAGCTGCTATCTTTTTGCGATCAATAACAGATCTCTTGTATATAGTAAACATTGTTTTTCAAATCTATATTGAAGACAAAGCTAAGAACTTTTGGGTCATGGGGAAATCATATTGTCAGTCACTCATCCCAATTGACATATTAGCCATTCTTCCCATTCCACAGGTAGTAATTTTCATTTTCTTTACAAAATTGAGAGGCTCAAAGTCAAGGATTTTTTTGAACTCTCTTATTCTCTTTCAATATCTGCCACGGGTTTTTCGGATCTACCTATCGTTTGAAGAACTTAAGAACCCTATCCGCTCTGCATTGAAATTTTTTACCTTCATCCTTGCAAGCAATGTACTTGGAGCTCTTTGGTACTTTTTCTCTATTCAAAGAGAGATAGATTGTTGGCAATATGCCTGTCGAAGTGTAAAAGGGTGTAAACTCAATGCTTTTGACTGTGATGATCATGCATTCAGAAATATCACACTTCTAAGTAATTTATGTCCTGTAAATCCACCCAACGTAACACTCTTTGATTTTGGTATATTTATTGATGCCGTCCAATCTGGTATGTTGAGATCAACAGATTTTCCCCAAAAGTTCTTGCACTGTTTCTGGTGGGGTCTCCGTAATCTAAGCTCTTTTGGCCAAAATCTCCAGACAAGTACCTATGCTTGGGAAGACCTCTTTGCAATTTTTATTTCTATCGGTGGCATGCTACTATTTTTAATCTATCTGAATGGAATTCTGCAGACATATATGCAGTTGGAAACTACTAGATCAAAGCAGCAAAGGAAATTGATGAAAATGGAGAGGAAGAGAGGTCCAGAGATAGCATCATGGTTACATAACAATGGCATCCCTTTGAATATGAAGAAGATGATAATGACATGTGTACTACACGAACTTGAAGCAAATCAAGATGTCAATGTCGAGAATATCCTCTCTATTCTTCCCTTGGAATGTTTGAAGTTTATCAAGCGGCATCTATGCTTGAATACGCTAAAGAGAGTGCCAGTGCTTCAAGCTATGGATGAACAAGTGCTGACAGCAGTGTGTGATAGTCATCTTAAGCCAGTAATCTATAGTGAGAACAGCTATATTATTCGGGAGAGTGAGCCAATTGATAGGATGCTTTTCATCACGCAAGGCATAGTGCGCACCTACACAATAACCAGTAATGATGGAAGTGGTTTCTCAAGGACTATGTGTCTCGAGAAAGGTGACATATACGGAGAAGAACTTCTAAATTGGGCTTTAAACAATGTCACCTCCTCTTCTGATGACTTGCCGATCTCAAACAGAATTGTTAAGTGCAGCACAAAAGTTGAAGCCTTTACTTTCATAGCCAGCGACTTGAAGAGCGTAGTTTCTGAATTCTGGACTGATGCTGTCGAGGAGAACTCTTACCCCACTGTTTCTGAACAATTGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

538

Amino Acids

62.25

Weight (kDa)

7.01

Isoelectric Point (pI)

45.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012554)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01910
malus_domestica	MD02G1017200.v1.1 MD15G1161600.v1.1
prunus_persica	Prupe.7G256700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0086921
rosa_laevigata	RLG00000015817
rosa_multiflora	Rmu_sc0009060.1_g000007
rosa_roxburghii	Rroxscaffold_2G00154000
rosa_rugosa	Rorug01G0470700 Rorug01G0470700 Rorug01G0470800 Rorug01G0470900 Rorug01G0471000 Rorug01G0471000
rosa_samantha	Rh2AG023500 Rh2BG024200 Rh2CG024400 Rh2DG024300
rosa_wichuraiana	Rw2G001860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1340
AccBSI	CCGCTC	1 cut(s)	495
AciI	CCGC	2 cut(s)	493, 1162
AclWI	GGATC	3 cut(s)	116, 129, 464
AcoI	YGGCCR	1 cut(s)	826
AcsI	RAATTY	3 cut(s)	506, 924, 1556
AfaI	GTAC	5 cut(s)	137, 537, 554, 847, 1077
AfiI	CCNNNNNNNGG	1 cut(s)	855
AflII	CTTAAG	2 cut(s)	479, 1250
AflIII	ACRYGT	1 cut(s)	1070
AhdI	GACNNNNNGTC	1 cut(s)	1389
AluBI	AGCT	6 cut(s)	197, 275, 545, 819, 1208, 1278
AluI	AGCT	6 cut(s)	197, 275, 545, 819, 1208, 1278
Alw21I	GWGCWC	1 cut(s)	547
Alw26I	GTCTC	3 cut(s)	173, 809, 1397
AlwI	GGATC	3 cut(s)	116, 129, 464
Ama87I	CYCGRG	1 cut(s)	1394
AoxI	GGCC	1 cut(s)	826
ApeKI	GCWGC	4 cut(s)	47, 197, 967, 1497
ApoI	RAATTY	3 cut(s)	506, 924, 1556
Asp700I	GAANNNNTTC	2 cut(s)	62, 1422
AspLEI	GCGC	1 cut(s)	1341
AspS9I	GGNCC	1 cut(s)	1004
AsuHPI	GGTGA	2 cut(s)	1415, 1441
AvaI	CYCGRG	1 cut(s)	1394
AvaII	GGWCC	1 cut(s)	1004
BalI	TGGCCA	1 cut(s)	828
BamHI	GGATCC	1 cut(s)	121
BanII	GRGCYC	1 cut(s)	547
BbsI	GAAGAC	2 cut(s)	273, 867
Bbv12I	GWGCWC	1 cut(s)	547
BbvI	GCAGC	4 cut(s)	34, 184, 979, 1509
BccI	CCATC	1 cut(s)	1358
BceAI	ACGGC	1 cut(s)	722
BclI	TGATCA	1 cut(s)	643
BcoDI	GTCTC	3 cut(s)	173, 809, 1397
BfaI	CTAG	2 cut(s)	957, 1615
BfmI	CTRYAG	3 cut(s)	144, 929, 1264
BfrI	CTTAAG	2 cut(s)	479, 1250
BglII	AGATCT	1 cut(s)	223
BisI	GCNGC	5 cut(s)	48, 198, 968, 1163, 1498
BlsI	GCNGC	5 cut(s)	49, 199, 969, 1164, 1499
Bme18I	GGWCC	1 cut(s)	1004
BmeRI	GACNNNNNGTC	1 cut(s)	1389
BmeT110I	CYCGRG	1 cut(s)	1394
BmgT120I	GGNCC	1 cut(s)	1004
BmiI	GGNNCC	1 cut(s)	123
BmsI	GCATC	6 cut(s)	724, 1025, 1047, 1174, 1302, 1558
BpiI	GAAGAC	2 cut(s)	273, 867
BplI	GAGNNNNNCTC	2 cut(s)	1568, 1600
BpmI	CTGGAG	1 cut(s)	821
BpuEI	CTTGAG	1 cut(s)	1363
BsaBI	GATNNNNATC	1 cut(s)	1245
BsaI	GGTCTC	1 cut(s)	809
BsaJI	CCNNGG	2 cut(s)	443, 1137
Bsc4I	CCNNNNNNNGG	1 cut(s)	855
Bse1I	ACTGG	4 cut(s)	123, 1196, 1256, 1356
Bse3DI	GCAATG	1 cut(s)	538
Bse8I	GATNNNNATC	1 cut(s)	1245
BseDI	CCNNGG	2 cut(s)	443, 1137
BseGI	GGATG	5 cut(s)	318, 519, 1038, 1219, 1317
BseJI	GATNNNNATC	1 cut(s)	1245
BseLI	CCNNNNNNNGG	1 cut(s)	855
BseMI	GCAATG	1 cut(s)	538
BseMII	CTCAG	1 cut(s)	184
BseNI	ACTGG	4 cut(s)	123, 1196, 1256, 1356
BseRI	GAGGAG	2 cut(s)	1444, 1592
BseXI	GCAGC	4 cut(s)	34, 184, 979, 1509
BsgI	GTGCAG	1 cut(s)	1516
BshFI	GGCC	1 cut(s)	828
BsiHKAI	GWGCWC	1 cut(s)	547
BsiHKCI	CYCGRG	1 cut(s)	1394
BslI	CCNNNNNNNGG	1 cut(s)	855
BsmAI	GTCTC	3 cut(s)	173, 809, 1397
BsmI	GAATGC	1 cut(s)	650
BsnI	GGCC	1 cut(s)	828
Bso31I	GGTCTC	1 cut(s)	809
BsoBI	CYCGRG	1 cut(s)	1394
Bsp1286I	GDGCHC	1 cut(s)	547
Bsp1407I	TGTACA	1 cut(s)	135
Bsp143I	GATC	8 cut(s)	121, 212, 223, 456, 643, 758, 959, 1473
BspACI	CCGC	2 cut(s)	493, 1162
BspANI	GGCC	1 cut(s)	828
BspCNI	CTCAG	1 cut(s)	183
BspLI	GGNNCC	1 cut(s)	123
BspMAI	CTGCAG	1 cut(s)	933
BspPI	GGATC	3 cut(s)	116, 129, 464
BspQI	GCTCTTC	1 cut(s)	1535
BspTI	CTTAAG	2 cut(s)	479, 1250
BspTNI	GGTCTC	1 cut(s)	809
BsrBI	CCGCTC	1 cut(s)	495
BsrDI	GCAATG	1 cut(s)	538
BsrGI	TGTACA	1 cut(s)	135
BsrI	ACTGG	4 cut(s)	123, 1196, 1256, 1356
BssECI	CCNNGG	2 cut(s)	443, 1137
BssMI	GATC	8 cut(s)	121, 212, 223, 456, 643, 758, 959, 1473
BssT1I	CCWWGG	1 cut(s)	1137
Bst4CI	ACNGT	3 cut(s)	638, 791, 1597
Bst6I	CTCTTC	4 cut(s)	74, 992, 1462, 1535
BstAFI	CTTAAG	2 cut(s)	479, 1250
BstAUI	TGTACA	1 cut(s)	135
BstC8I	GCNNGC	3 cut(s)	529, 896, 1531
BstDEI	CTNAG	4 cut(s)	170, 276, 671, 815
BstDSI	CCRYGG	1 cut(s)	443
BstF5I	GGATG	5 cut(s)	318, 519, 1038, 1219, 1317
BstHHI	GCGC	1 cut(s)	1341
BstKTI	GATC	8 cut(s)	124, 215, 226, 459, 646, 761, 962, 1476
BstMAI	GTCTC	3 cut(s)	173, 809, 1397
BstMBI	GATC	8 cut(s)	121, 212, 223, 456, 643, 758, 959, 1473
BstMWI	GCNNNNNNNGC	2 cut(s)	825, 1338
BstNSI	RCATGY	2 cut(s)	898, 1074
BstSFI	CTRYAG	3 cut(s)	144, 929, 1264
BstV1I	GCAGC	4 cut(s)	34, 184, 979, 1509
BstV2I	GAAGAC	2 cut(s)	273, 867
BstX2I	RGATCY	3 cut(s)	121, 223, 456
BstYI	RGATCY	3 cut(s)	121, 223, 456
BsuRI	GGCC	1 cut(s)	828
BtgI	CCRYGG	1 cut(s)	443
BtsCI	GGATG	5 cut(s)	318, 519, 1038, 1219, 1317
BtsI	GCAGTG	1 cut(s)	1239
BtsIMutI	CAGTG	4 cut(s)	787, 1203, 1239, 1593
Cac8I	GCNNGC	3 cut(s)	529, 896, 1531
CfoI	GCGC	1 cut(s)	1341
Cfr13I	GGNCC	1 cut(s)	1004
Csp6I	GTAC	5 cut(s)	136, 536, 553, 846, 1076
CviAII	CATG	6 cut(s)	99, 292, 647, 895, 1020, 1071
CviQI	GTAC	5 cut(s)	136, 536, 553, 846, 1076
DdeI	CTNAG	4 cut(s)	170, 276, 671, 815
DpnI	GATC	8 cut(s)	123, 214, 225, 458, 645, 760, 961, 1475
DpnII	GATC	8 cut(s)	121, 212, 223, 456, 643, 758, 959, 1473
DraI	TTTAAA	1 cut(s)	1440
DriI	GACNNNNNGTC	1 cut(s)	1389
EaeI	YGGCCR	1 cut(s)	826
Eam1104I	CTCTTC	4 cut(s)	74, 992, 1462, 1535
Eam1105I	GACNNNNNGTC	1 cut(s)	1389
EarI	CTCTTC	4 cut(s)	74, 992, 1462, 1535
Ecl136II	GAGCTC	1 cut(s)	545
Eco130I	CCWWGG	1 cut(s)	1137
Eco24I	GRGCYC	1 cut(s)	547
Eco31I	GGTCTC	1 cut(s)	809
Eco47I	GGWCC	1 cut(s)	1004
Eco53kI	GAGCTC	1 cut(s)	545
Eco88I	CYCGRG	1 cut(s)	1394
EcoICRI	GAGCTC	1 cut(s)	545
EcoRI	GAATTC	2 cut(s)	924, 1556
EcoT14I	CCWWGG	1 cut(s)	1137
EcoT22I	ATGCAT	1 cut(s)	652
EcoT38I	GRGCYC	1 cut(s)	547
ErhI	CCWWGG	1 cut(s)	1137
FaeI	CATG	6 cut(s)	102, 295, 650, 898, 1023, 1074
FatI	CATG	6 cut(s)	98, 291, 646, 894, 1019, 1070
FbaI	TGATCA	1 cut(s)	643
Fnu4HI	GCNGC	5 cut(s)	48, 198, 968, 1163, 1498
FokI	GGATG	5 cut(s)	305, 506, 1025, 1226, 1324
FriOI	GRGCYC	1 cut(s)	547
Fsp4HI	GCNGC	5 cut(s)	48, 198, 968, 1163, 1498
FspAI	RTGCGCAY	1 cut(s)	1340
FspBI	CTAG	2 cut(s)	957, 1615
FspI	TGCGCA	1 cut(s)	1340
GlaI	GCGC	1 cut(s)	1340
GluI	GCNGC	5 cut(s)	48, 198, 968, 1163, 1498
GsuI	CTGGAG	1 cut(s)	821
HaeIII	GGCC	1 cut(s)	828
HhaI	GCGC	1 cut(s)	1341
Hin1II	CATG	6 cut(s)	102, 295, 650, 898, 1023, 1074
Hin6I	GCGC	1 cut(s)	1339
HinP1I	GCGC	1 cut(s)	1339
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HpaI	GTTAAC	1 cut(s)	151
HphI	GGTGA	2 cut(s)	1415, 1441
Hpy166II	GTNNAC	4 cut(s)	151, 241, 620, 1076
Hpy188I	TCNGA	7 cut(s)	173, 456, 656, 918, 1462, 1555, 1603
Hpy188III	TCNNGA	8 cut(s)	838, 1007, 1100, 1114, 1289, 1394, 1396, 1561
Hpy8I	GTNNAC	4 cut(s)	151, 241, 620, 1076
HpyAV	CCTTC	2 cut(s)	77, 526
HpyCH4III	ACNGT	3 cut(s)	638, 791, 1597
HpyCH4IV	ACGT	1 cut(s)	702
HpyF10VI	GCNNNNNNNGC	2 cut(s)	825, 1338
HpyF3I	CTNAG	4 cut(s)	170, 276, 671, 815
HpySE526I	ACGT	1 cut(s)	702
Hsp92II	CATG	6 cut(s)	102, 295, 650, 898, 1023, 1074
HspAI	GCGC	1 cut(s)	1339
Ksp22I	TGATCA	1 cut(s)	643
KspAI	GTTAAC	1 cut(s)	151
Kzo9I	GATC	8 cut(s)	121, 212, 223, 456, 643, 758, 959, 1473
LguI	GCTCTTC	1 cut(s)	1535
LmnI	GCTCC	1 cut(s)	542
Lsp1109I	GCAGC	4 cut(s)	34, 184, 979, 1509
LweI	GCATC	6 cut(s)	724, 1025, 1047, 1174, 1302, 1558
MaeI	CTAG	2 cut(s)	957, 1615
MaeII	ACGT	1 cut(s)	702
MaeIII	GTNAC	5 cut(s)	312, 703, 1023, 1403, 1447
MalI	GATC	8 cut(s)	123, 214, 225, 458, 645, 760, 961, 1475
MbiI	CCGCTC	1 cut(s)	495
MboI	GATC	8 cut(s)	121, 212, 223, 456, 643, 758, 959, 1473
MfeI	CAATTG	3 cut(s)	324, 1302, 1607
MflI	RGATCY	3 cut(s)	121, 223, 456
MhlI	GDGCHC	1 cut(s)	547
MlsI	TGGCCA	1 cut(s)	828
MluNI	TGGCCA	1 cut(s)	828
MmeI	TCCRAC	1 cut(s)	927
Mox20I	TGGCCA	1 cut(s)	828
Mph1103I	ATGCAT	1 cut(s)	652
MroXI	GAANNNNTTC	2 cut(s)	62, 1422
MscI	TGGCCA	1 cut(s)	828
MseI	TTAA	6 cut(s)	150, 480, 908, 1251, 1439, 1491
MslI	CAYNNNNRTG	1 cut(s)	1032
Msp20I	TGGCCA	1 cut(s)	828
MspCI	CTTAAG	2 cut(s)	479, 1250
MunI	CAATTG	3 cut(s)	324, 1302, 1607
Mva1269I	GAATGC	1 cut(s)	650
MwoI	GCNNNNNNNGC	2 cut(s)	825, 1338
NdeII	GATC	8 cut(s)	121, 212, 223, 456, 643, 758, 959, 1473
NlaIII	CATG	6 cut(s)	102, 295, 650, 898, 1023, 1074
NlaIV	GGNNCC	1 cut(s)	123
NmuCI	GTSAC	3 cut(s)	312, 1403, 1447
NsbI	TGCGCA	1 cut(s)	1340
NsiI	ATGCAT	1 cut(s)	652
NspI	RCATGY	2 cut(s)	898, 1074
PaeI	GCATGC	1 cut(s)	898
PaeR7I	CTCGAG	1 cut(s)	1394
PciI	ACATGT	1 cut(s)	1070
PciSI	GCTCTTC	1 cut(s)	1535
PctI	GAATGC	1 cut(s)	650
PdmI	GAANNNNTTC	2 cut(s)	62, 1422
PkrI	GCNGC	5 cut(s)	49, 199, 969, 1164, 1499
PscI	ACATGT	1 cut(s)	1070
Psp124BI	GAGCTC	1 cut(s)	547
PspN4I	GGNNCC	1 cut(s)	123
PspPI	GGNCC	1 cut(s)	1004
PstI	CTGCAG	1 cut(s)	933
PsuI	RGATCY	3 cut(s)	121, 223, 456
RsaI	GTAC	5 cut(s)	137, 537, 554, 847, 1077
RsaNI	GTAC	5 cut(s)	136, 536, 553, 846, 1076
RseI	CAYNNNNRTG	1 cut(s)	1032
SacI	GAGCTC	1 cut(s)	547
SapI	GCTCTTC	1 cut(s)	1535
SaqAI	TTAA	6 cut(s)	150, 480, 908, 1251, 1439, 1491
SatI	GCNGC	5 cut(s)	48, 198, 968, 1163, 1498
Sau3AI	GATC	8 cut(s)	121, 212, 223, 456, 643, 758, 959, 1473
Sau96I	GGNCC	1 cut(s)	1004
SduI	GDGCHC	1 cut(s)	547
SfaNI	GCATC	6 cut(s)	724, 1025, 1047, 1174, 1302, 1558
SfcI	CTRYAG	3 cut(s)	144, 929, 1264
Sfr274I	CTCGAG	1 cut(s)	1394
SinI	GGWCC	1 cut(s)	1004
SlaI	CTCGAG	1 cut(s)	1394
SmiMI	CAYNNNNRTG	1 cut(s)	1032
SmlI	CTYRAG	4 cut(s)	479, 1250, 1378, 1394
SmoI	CTYRAG	4 cut(s)	479, 1250, 1378, 1394
SphI	GCATGC	1 cut(s)	898
SsiI	CCGC	2 cut(s)	493, 1162
SspMI	CTAG	2 cut(s)	957, 1615
SstI	GAGCTC	1 cut(s)	547
StyI	CCWWGG	1 cut(s)	1137
TaaI	ACNGT	3 cut(s)	638, 791, 1597
TaiI	ACGT	1 cut(s)	705
TaqI	TCGA	4 cut(s)	601, 1113, 1395, 1575
TatI	WGTACW	3 cut(s)	135, 535, 1075
TauI	GCSGC	1 cut(s)	1165
Tru1I	TTAA	6 cut(s)	150, 480, 908, 1251, 1439, 1491
Tru9I	TTAA	6 cut(s)	150, 480, 908, 1251, 1439, 1491
TscAI	CASTG	4 cut(s)	794, 1203, 1239, 1600
TseFI	GTSAC	3 cut(s)	312, 1403, 1447
TseI	GCWGC	4 cut(s)	47, 197, 967, 1497
Tsp45I	GTSAC	3 cut(s)	312, 1403, 1447
TspDTI	ATGAA	9 cut(s)	176, 206, 358, 508, 998, 1067, 1230, 1309, 1513
TspGWI	ACGGA	2 cut(s)	797, 1428
TspRI	CASTG	4 cut(s)	794, 1203, 1239, 1600
Vha464I	CTTAAG	2 cut(s)	479, 1250
VpaK11BI	GGWCC	1 cut(s)	1004
XapI	RAATTY	3 cut(s)	506, 924, 1556
XceI	RCATGY	2 cut(s)	898, 1074
XhoI	CTCGAG	1 cut(s)	1394
XmnI	GAANNNNTTC	2 cut(s)	62, 1422
XspI	CTAG	2 cut(s)	957, 1615
Zsp2I	ATGCAT	1 cut(s)	652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.