Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009060.1

Orthogroup ID

OG0012554

Physical Location & Seq

Genomic Coordinates Reverse (-)

18440 .. 20872

Gene Structure 2433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009060.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1497 bp

atgggtcagggattgttctacgacagtacaagaaagacattggattaccttgtgaaggaggcagatgaaactgctcaaaacctcaggaatgtgtcagattctcttagcgcagctaagaagatcggacttgacgccatagttcctccgacagatattcagaatcaaattgacgagggtatgggaacaatacagtatgtttccaattttctttctgaaacaactgataagactgcacggaagtcaaatcaagtcttaacagacttgaagctggcgctcatggttttttctgctgttatgctccttctggtctttattggatttgcactttccatgtgcgggatgcgatttcttgtatactgcttggtgattgttgggtggattcttgttacctgtgcattcatcttgtgcggtacatttctcctcatccataatgcgtttggagatgcatgtgtctccatggatgagtggattcaaaagcaccccacagcccacactgctttggatgatctacttccatgcgtggacaaaaatgtaagccagagcatgttggaacggaccaagatggcaacctactttgctgttgaagcggttaatcgtgtcatcaccgatggtgcaaatcttgatccttctgacagtccattaaattacaatcagtctggccctttattaccaccagtctgcaacccctttaatgaggataaaactgatcggaaatgtgttcctggtgaagtggaattgcaacaagcacaagaggtatggcagaaatacgtatgtaaggtttctagtccaaccagccagtgtgtatcaccagggcggctgactcctacctacttcgatcaaatgtcagcttttgtaaatgtgagcaacgcactgtatcggtacagtccattctttgctgatcttgcagactgcacatttgctaaggatacattctcggacataagtaaacagcattgtcccggtctgcgactacatagtaaatggatctacattggcttgttaatggtagccttagctgtaatgtcgtctatgatcttctgggtgatttactgccgggaacgaagacatcgcgtgtatactaaaaaatgtgacagtttacactatgacagtttaaactatggcagtgcaaatcatggcagcagaaactttggcagtgcaaatcatggcagcagaaactttggcagtgcaaatcatggcagtagaaactttggcagcccaaatcatggcagtagaaactttggcagtggaaatcatggcagtggaaactttggcccaaatcatggcaaaactttggcagtgcaaatcatggcagcagaaactttggcagtggaaatcatggcagtagaaactttggcagcccaaatcatggcagtggaaactttggcagtggaaatcatggcagtggaaactttggcccaaatcatggcagtagaaactttggcagtggaaactttggcagtgcaaatactggataggaaacagttggcagtttactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

498

Amino Acids

54.88

Weight (kDa)

6.01

Isoelectric Point (pI)

33.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012554)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01910
malus_domestica	MD02G1017200.v1.1 MD15G1161600.v1.1
prunus_persica	Prupe.7G256700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0086921
rosa_laevigata	RLG00000015817
rosa_multiflora	Rmu_sc0009060.1_g000007
rosa_roxburghii	Rroxscaffold_2G00154000
rosa_rugosa	Rorug01G0470700 Rorug01G0470700 Rorug01G0470800 Rorug01G0470900 Rorug01G0471000 Rorug01G0471000
rosa_samantha	Rh2AG023500 Rh2BG024200 Rh2CG024400 Rh2DG024300
rosa_wichuraiana	Rw2G001860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	4 cut(s)	1223, 1280, 1366, 1423
AccI	GTMKAC	2 cut(s)	354, 1076
AccII	CGCG	1 cut(s)	1071
AciI	CCGC	4 cut(s)	336, 408, 587, 814
AclWI	GGATC	2 cut(s)	617, 992
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	3 cut(s)	28, 412, 881
AfiI	CCNNNNNNNGG	6 cut(s)	55, 336, 1223, 1280, 1366, 1423
AgsI	TTSAA	3 cut(s)	265, 473, 584
AjnI	CCWGG	2 cut(s)	721, 808
AluBI	AGCT	4 cut(s)	113, 268, 848, 1016
AluI	AGCT	4 cut(s)	113, 268, 848, 1016
Alw26I	GTCTC	1 cut(s)	457
AlwI	GGATC	2 cut(s)	617, 992
AoxI	GGCC	3 cut(s)	658, 1270, 1413
ApeKI	GCWGC	6 cut(s)	110, 1137, 1167, 1212, 1310, 1355
ArsI	GACNNNNNNTTYG	2 cut(s)	899, 931
AspLEI	GCGC	2 cut(s)	110, 274
AspS9I	GGNCC	4 cut(s)	555, 659, 1271, 1414
AsuC2I	CCSGG	2 cut(s)	960, 1055
AsuHPI	GGTGA	5 cut(s)	376, 595, 737, 798, 1054
AvaII	GGWCC	1 cut(s)	555
AxyI	CCTNAGG	1 cut(s)	83
BbsI	GAAGAC	1 cut(s)	1069
BbvI	GCAGC	6 cut(s)	122, 1149, 1179, 1224, 1322, 1367
BccI	CCATC	2 cut(s)	556, 602
BciT130I	CCWGG	2 cut(s)	723, 810
BciVI	GTATCC	1 cut(s)	919
BcnI	CCSGG	2 cut(s)	960, 1055
BcoDI	GTCTC	1 cut(s)	457
BfaI	CTAG	1 cut(s)	783
BfoI	RGCGCY	1 cut(s)	275
BfuI	GTATCC	1 cut(s)	919
BisI	GCNGC	7 cut(s)	111, 815, 1138, 1168, 1213, 1311, 1356
BlsI	GCNGC	7 cut(s)	112, 816, 1139, 1169, 1214, 1312, 1357
Bme1390I	CCNGG	4 cut(s)	723, 810, 960, 1055
Bme18I	GGWCC	1 cut(s)	555
BmgT120I	GGNCC	4 cut(s)	555, 659, 1271, 1414
BmrFI	CCNGG	4 cut(s)	723, 810, 960, 1055
BmsI	GCATC	2 cut(s)	330, 433
BpiI	GAAGAC	1 cut(s)	1069
Bpu10I	CCTNAGC	2 cut(s)	921, 1012
BpuMI	CCSGG	2 cut(s)	960, 1055
BsaAI	YACGTR	1 cut(s)	769
BsaHI	GRCGYC	1 cut(s)	132
BsaJI	CCNNGG	2 cut(s)	456, 809
Bsc4I	CCNNNNNNNGG	6 cut(s)	55, 336, 1223, 1280, 1366, 1423
Bse1I	ACTGG	3 cut(s)	674, 796, 1473
Bse21I	CCTNAGG	1 cut(s)	83
BseBI	CCWGG	2 cut(s)	723, 810
BseDI	CCNNGG	2 cut(s)	456, 809
BseGI	GGATG	4 cut(s)	345, 423, 466, 508
BseLI	CCNNNNNNNGG	6 cut(s)	55, 336, 1223, 1280, 1366, 1423
BseMII	CTCAG	1 cut(s)	97
BseNI	ACTGG	3 cut(s)	674, 796, 1473
BseRI	GAGGAG	1 cut(s)	410
BseXI	GCAGC	6 cut(s)	122, 1149, 1179, 1224, 1322, 1367
BsgI	GTGCAG	2 cut(s)	216, 895
Bsh1236I	CGCG	1 cut(s)	1071
BshFI	GGCC	3 cut(s)	660, 1272, 1415
BsiSI	CCGG	2 cut(s)	960, 1054
BslFI	GGGAC	1 cut(s)	942
BslI	CCNNNNNNNGG	6 cut(s)	55, 336, 1223, 1280, 1366, 1423
BsmAI	GTCTC	1 cut(s)	457
BsmFI	GGGAC	1 cut(s)	942
BsmI	GAATGC	1 cut(s)	395
BsnI	GGCC	3 cut(s)	660, 1272, 1415
Bsp143I	GATC	8 cut(s)	120, 505, 622, 706, 835, 898, 984, 1032
Bsp19I	CCATGG	1 cut(s)	456
BspACI	CCGC	4 cut(s)	336, 408, 587, 814
BspANI	GGCC	3 cut(s)	660, 1272, 1415
BspCNI	CTCAG	1 cut(s)	96
BspFNI	CGCG	1 cut(s)	1071
BspPI	GGATC	2 cut(s)	617, 992
BsrI	ACTGG	3 cut(s)	674, 796, 1473
BssECI	CCNNGG	2 cut(s)	456, 809
BssMI	GATC	8 cut(s)	120, 505, 622, 706, 835, 898, 984, 1032
BssNAI	GTATAC	2 cut(s)	355, 1077
BssNI	GRCGYC	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	456
Bst1107I	GTATAC	2 cut(s)	355, 1077
Bst2UI	CCWGG	2 cut(s)	723, 810
Bst4CI	ACNGT	8 cut(s)	26, 192, 635, 873, 884, 1094, 1109, 1482
BstACI	GRCGYC	1 cut(s)	132
BstBAI	YACGTR	1 cut(s)	769
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	5 cut(s)	83, 104, 114, 921, 1012
BstDSI	CCRYGG	1 cut(s)	456
BstENI	CCTNNNNNAGG	1 cut(s)	53
BstF5I	GGATG	4 cut(s)	345, 423, 466, 508
BstFNI	CGCG	1 cut(s)	1071
BstH2I	RGCGCY	1 cut(s)	275
BstHHI	GCGC	2 cut(s)	110, 274
BstKTI	GATC	8 cut(s)	123, 508, 625, 709, 838, 901, 987, 1035
BstMAI	GTCTC	1 cut(s)	457
BstMBI	GATC	8 cut(s)	120, 505, 622, 706, 835, 898, 984, 1032
BstMWI	GCNNNNNNNGC	3 cut(s)	494, 584, 902
BstNI	CCWGG	2 cut(s)	723, 810
BstNSI	RCATGY	2 cut(s)	450, 547
BstSCI	CCNGG	4 cut(s)	721, 808, 958, 1053
BstSNI	TACGTA	1 cut(s)	769
BstUI	CGCG	1 cut(s)	1071
BstV1I	GCAGC	6 cut(s)	122, 1149, 1179, 1224, 1322, 1367
BstV2I	GAAGAC	1 cut(s)	1069
BstX2I	RGATCY	1 cut(s)	984
BstYI	RGATCY	1 cut(s)	984
BstZ17I	GTATAC	2 cut(s)	355, 1077
Bsu36I	CCTNAGG	1 cut(s)	83
BsuI	GTATCC	1 cut(s)	919
BsuRI	GGCC	3 cut(s)	660, 1272, 1415
BtgI	CCRYGG	1 cut(s)	456
BtgZI	GCGATG	1 cut(s)	1052
BtsCI	GGATG	4 cut(s)	345, 423, 466, 508
Cac8I	GCNNGC	1 cut(s)	270
CfoI	GCGC	2 cut(s)	110, 274
Cfr13I	GGNCC	4 cut(s)	555, 659, 1271, 1414
CseI	GACGC	1 cut(s)	140
Csp6I	GTAC	3 cut(s)	27, 411, 880
CviQI	GTAC	3 cut(s)	27, 411, 880
DdeI	CTNAG	5 cut(s)	83, 104, 114, 921, 1012
DpnI	GATC	8 cut(s)	122, 507, 624, 708, 837, 900, 986, 1034
DpnII	GATC	8 cut(s)	120, 505, 622, 706, 835, 898, 984, 1032
DraI	TTTAAA	1 cut(s)	1113
Eco105I	TACGTA	1 cut(s)	769
Eco130I	CCWWGG	1 cut(s)	456
Eco47I	GGWCC	1 cut(s)	555
Eco81I	CCTNAGG	1 cut(s)	83
EcoNI	CCTNNNNNAGG	1 cut(s)	53
EcoRII	CCWGG	2 cut(s)	721, 808
EcoT14I	CCWWGG	1 cut(s)	456
EcoT22I	ATGCAT	1 cut(s)	448
ErhI	CCWWGG	1 cut(s)	456
FaqI	GGGAC	1 cut(s)	942
FauI	CCCGC	1 cut(s)	329
FblI	GTMKAC	2 cut(s)	354, 1076
Fnu4HI	GCNGC	7 cut(s)	111, 815, 1138, 1168, 1213, 1311, 1356
FokI	GGATG	4 cut(s)	352, 410, 473, 515
Fsp4HI	GCNGC	7 cut(s)	111, 815, 1138, 1168, 1213, 1311, 1356
FspBI	CTAG	1 cut(s)	783
GlaI	GCGC	2 cut(s)	109, 273
GluI	GCNGC	7 cut(s)	111, 815, 1138, 1168, 1213, 1311, 1356
HaeII	RGCGCY	1 cut(s)	275
HaeIII	GGCC	3 cut(s)	660, 1272, 1415
HapII	CCGG	2 cut(s)	960, 1054
HgaI	GACGC	1 cut(s)	140
HhaI	GCGC	2 cut(s)	110, 274
Hin1I	GRCGYC	1 cut(s)	132
Hin6I	GCGC	2 cut(s)	108, 272
HinP1I	GCGC	2 cut(s)	108, 272
HinfI	GANTC	5 cut(s)	98, 160, 379, 469, 820
HpaII	CCGG	2 cut(s)	960, 1054
HphI	GGTGA	5 cut(s)	376, 595, 737, 798, 1054
Hpy166II	GTNNAC	6 cut(s)	355, 523, 947, 1077, 1097, 1492
Hpy188I	TCNGA	8 cut(s)	97, 125, 147, 159, 214, 631, 711, 937
Hpy188III	TCNNGA	2 cut(s)	85, 620
Hpy8I	GTNNAC	6 cut(s)	355, 523, 947, 1077, 1097, 1492
HpyAV	CCTTC	3 cut(s)	49, 311, 636
HpyCH4III	ACNGT	8 cut(s)	26, 192, 635, 873, 884, 1094, 1109, 1482
HpyCH4IV	ACGT	1 cut(s)	768
HpyF10VI	GCNNNNNNNGC	3 cut(s)	494, 584, 902
HpyF3I	CTNAG	5 cut(s)	83, 104, 114, 921, 1012
HpySE526I	ACGT	1 cut(s)	768
Hsp92I	GRCGYC	1 cut(s)	132
HspAI	GCGC	2 cut(s)	108, 272
Kzo9I	GATC	8 cut(s)	120, 505, 622, 706, 835, 898, 984, 1032
LmnI	GCTCC	1 cut(s)	303
Lsp1109I	GCAGC	6 cut(s)	122, 1149, 1179, 1224, 1322, 1367
LweI	GCATC	2 cut(s)	330, 433
MaeI	CTAG	1 cut(s)	783
MaeII	ACGT	1 cut(s)	768
MaeIII	GTNAC	2 cut(s)	385, 1088
MalI	GATC	8 cut(s)	122, 507, 624, 708, 837, 900, 986, 1034
MboI	GATC	8 cut(s)	120, 505, 622, 706, 835, 898, 984, 1032
MboII	GAAGA	3 cut(s)	130, 1027, 1074
MflI	RGATCY	1 cut(s)	984
MluCI	AATT	4 cut(s)	165, 202, 643, 734
MlyI	GAGTC	1 cut(s)	814
MmeI	TCCRAC	3 cut(s)	170, 528, 812
MnlI	CCTC	7 cut(s)	52, 92, 153, 166, 431, 688, 745
Mph1103I	ATGCAT	1 cut(s)	448
MseI	TTAA	6 cut(s)	254, 591, 641, 690, 1001, 1112
MslI	CAYNNNNRTG	3 cut(s)	1257, 1370, 1400
MspI	CCGG	2 cut(s)	960, 1054
MspR9I	CCNGG	4 cut(s)	723, 810, 960, 1055
MssI	GTTTAAAC	1 cut(s)	1113
Mva1269I	GAATGC	1 cut(s)	395
MvaI	CCWGG	2 cut(s)	723, 810
MvnI	CGCG	1 cut(s)	1071
MwoI	GCNNNNNNNGC	3 cut(s)	494, 584, 902
NciI	CCSGG	2 cut(s)	960, 1055
NcoI	CCATGG	1 cut(s)	456
NdeII	GATC	8 cut(s)	120, 505, 622, 706, 835, 898, 984, 1032
NmuCI	GTSAC	1 cut(s)	1088
NsiI	ATGCAT	1 cut(s)	448
NspI	RCATGY	2 cut(s)	450, 547
PctI	GAATGC	1 cut(s)	395
PfeI	GAWTC	4 cut(s)	98, 160, 379, 469
PflMI	CCANNNNNTGG	4 cut(s)	1223, 1280, 1366, 1423
PkrI	GCNGC	7 cut(s)	112, 816, 1139, 1169, 1214, 1312, 1357
PleI	GAGTC	1 cut(s)	814
PmeI	GTTTAAAC	1 cut(s)	1113
PpsI	GAGTC	1 cut(s)	814
Ppu21I	YACGTR	1 cut(s)	769
Psp6I	CCWGG	2 cut(s)	721, 808
PspGI	CCWGG	2 cut(s)	721, 808
PspPI	GGNCC	4 cut(s)	555, 659, 1271, 1414
PsuI	RGATCY	1 cut(s)	984
RsaI	GTAC	3 cut(s)	28, 412, 881
RsaNI	GTAC	3 cut(s)	27, 411, 880
RseI	CAYNNNNRTG	3 cut(s)	1257, 1370, 1400
SaqAI	TTAA	6 cut(s)	254, 591, 641, 690, 1001, 1112
SatI	GCNGC	7 cut(s)	111, 815, 1138, 1168, 1213, 1311, 1356
Sau3AI	GATC	8 cut(s)	120, 505, 622, 706, 835, 898, 984, 1032
Sau96I	GGNCC	4 cut(s)	555, 659, 1271, 1414
SchI	GAGTC	1 cut(s)	814
ScrFI	CCNGG	4 cut(s)	723, 810, 960, 1055
SfaNI	GCATC	2 cut(s)	330, 433
SinI	GGWCC	1 cut(s)	555
SmiMI	CAYNNNNRTG	3 cut(s)	1257, 1370, 1400
SnaBI	TACGTA	1 cut(s)	769
Sse9I	AATT	4 cut(s)	165, 202, 643, 734
SsiI	CCGC	4 cut(s)	336, 408, 587, 814
SspMI	CTAG	1 cut(s)	783
StyD4I	CCNGG	4 cut(s)	721, 808, 958, 1053
StyI	CCWWGG	1 cut(s)	456
TaaI	ACNGT	8 cut(s)	26, 192, 635, 873, 884, 1094, 1109, 1482
TaiI	ACGT	1 cut(s)	771
TaqI	TCGA	1 cut(s)	834
TasI	AATT	4 cut(s)	165, 202, 643, 734
TatI	WGTACW	1 cut(s)	26
TauI	GCSGC	1 cut(s)	817
TfiI	GAWTC	4 cut(s)	98, 160, 379, 469
Tru1I	TTAA	6 cut(s)	254, 591, 641, 690, 1001, 1112
Tru9I	TTAA	6 cut(s)	254, 591, 641, 690, 1001, 1112
TseFI	GTSAC	1 cut(s)	1088
TseI	GCWGC	6 cut(s)	110, 1137, 1167, 1212, 1310, 1355
Tsp45I	GTSAC	1 cut(s)	1088
TspDTI	ATGAA	2 cut(s)	81, 388
TspGWI	ACGGA	2 cut(s)	250, 568
Van91I	CCANNNNNTGG	4 cut(s)	1223, 1280, 1366, 1423
VpaK11BI	GGWCC	1 cut(s)	555
XagI	CCTNNNNNAGG	1 cut(s)	53
XceI	RCATGY	2 cut(s)	450, 547
XcmI	CCANNNNNNNNNTGG	1 cut(s)	434
XmiI	GTMKAC	2 cut(s)	354, 1076
XspI	CTAG	1 cut(s)	783
Zsp2I	ATGCAT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.