Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0012554

Physical Location & Seq

Genomic Coordinates Forward (+)

1622802 .. 1630024

Gene Structure 7223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG024200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1593 bp

ATGGCTATTCTAGAACAGCCTATTGCCTCTCTCTCGTCACCCTCATTATCTTCACCTTCATGGCAATGTAACTTTCTCTCGAACTTTCTTTCTCTACACACACACTCACACACACACCTAATTTTCATGCCAAGCACTAGTGCCAGTCAGCTTTTATGTTGCTGTTGGCTGTTGGCTCCCTTCAATGTTCGTGTGGTCTGTTGTAGTGCTGGATGCGTTGTGCTGTACATGGGTCAGGGATTGTTCTACGACAGTACAAGAAAGACATTGGATTACCTTGTGAAGGAGGCAGATGAAACTGCTCAAAACCTCAGGAATGTGTCAGATTCTCTTAGCGCAGCTAAGAAGATCGGACTTGACGCCATCGTTCCTCCGGCAGATATTCAGAATCAAATTGACGAGGGTATGGGAACAATAAAATATGTTTCCAATTTTCTTTCTGAAACAACTGATAAGACTGCACGGAAGTCAAATCAAGTCTTAACAGACTTGAAGCTGGCGCTCATGGTTTTTTCTGCTGTTATGCTCCTTCTGGTCTTTATTGGATTTGCACTTTCCATGTGCGGGATGCGATTTCTTGTATACTGCTTGGTGATTGTTGGGTGGATTCTTGTTACCTGTGCATTCATCTTGTGCGGTACATTTCTCCTCATCCATAATGCGTTTGGAGATGCATGTGTCTCCATGGATGAGTGGGTTCAAAAGCACCCCACAGCCCACACTGCTTTGGATGATCTACTTCCATGTGTGGACAAAAATGTAAGCCAGAGCATGTTGGAACAGACCAAGATGGCAACCTACTTTGCTGTTCAAGCGGTTAATCGTGTCATCACCGATGGTGCAAATCTTGATCCTTCTGACAGTCCATTAAATTACAATCAGTCTGGCCCTTTATTACCACCAGTCTGCAACCCCTTCAATGAGGATAAAACTGATCGGAAATGTGTCCCTGGTGAAGTGGAATTGCAACAAGCACAAGAGGTATGGCAGAAATACGTATGTAAGGTTTCTAGTCCAACTGGCCAGTGTGTATCACCAGGGCGGCTGACTCCTACCCACTTCGATCAAATGTCAGCTTTTGTAAATGTGAGCAACGCACTGTATCGGTACAGTCCATTCTTTGCTGATCTTGCAGACTGCACATTTGCTAAGGATACATTCTCGGACATAAGTAAACAGCATTGTCCCGGTCTGCGACTACATAGTAAATGGATCTACATTGGCTTGTTAATGGTAGCCTTAGCTGTAATGTTGTCTATGATCTTCTGGGTGATTTACTGCCGGGAACGAAGACATCGCCTGTATACTAAAAAATGTGACAGTTTACACTATGACAGTTTAAACTATGGCAGTGCAAACTATGGCAGTGCAAATCATGGCAGTAGAAACTTTGGCAGCGCGAATCATGGCAGTAGAAACTCTGGCAGTGGAAATCATGGCAGTAGAAACTTTGGCAGCGCAAATCATGGCAGTAGAAACTCTGGCAGCGGAAATCATGGCAGTAGAAACTTTGGCAGCGCAAATCATGGCAGTAGAAACTCTGGCAGTGGAAATCATGGCAGTAGAAACTTTGGCAGTGCAAATACTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

530

Amino Acids

58.03

Weight (kDa)

8.0

Isoelectric Point (pI)

35.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pentapeptide_2	PF01469	447 - 481	7.9e-09	Pentapeptide repeats (8 copies)
Pentapeptide_2	PF01469	467 - 505	1.5e-08	Pentapeptide repeats (8 copies)
Pentapeptide_2	PF01469	497 - 530	1.2e-08	Pentapeptide repeats (8 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012554)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01910
malus_domestica	MD02G1017200.v1.1 MD15G1161600.v1.1
prunus_persica	Prupe.7G256700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0086921
rosa_laevigata	RLG00000015817
rosa_multiflora	Rmu_sc0009060.1_g000007
rosa_roxburghii	Rroxscaffold_2G00154000
rosa_rugosa	Rorug01G0470700 Rorug01G0470700 Rorug01G0470800 Rorug01G0470900 Rorug01G0471000 Rorug01G0471000
rosa_samantha	Rh2AG023500 Rh2BG024200 Rh2CG024400 Rh2DG024300
rosa_wichuraiana	Rw2G001860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	582, 1304
AccII	CGCG	1 cut(s)	1400
AciI	CCGC	5 cut(s)	564, 636, 815, 1042, 1488
AclWI	GGATC	2 cut(s)	845, 1220
AcoI	YGGCCR	1 cut(s)	1021
AcyI	GRCGYC	1 cut(s)	360
AfaI	GTAC	4 cut(s)	227, 256, 640, 1109
AfiI	CCNNNNNNNGG	2 cut(s)	283, 564
AgsI	TTSAA	5 cut(s)	184, 493, 701, 812, 919
AhlI	ACTAGT	1 cut(s)	137
AjnI	CCWGG	2 cut(s)	949, 1036
AluBI	AGCT	5 cut(s)	151, 341, 496, 1076, 1244
AluI	AGCT	5 cut(s)	151, 341, 496, 1076, 1244
Alw26I	GTCTC	1 cut(s)	685
AlwI	GGATC	2 cut(s)	845, 1220
AoxI	GGCC	2 cut(s)	886, 1021
ApeKI	GCWGC	5 cut(s)	338, 1395, 1455, 1485, 1515
ArsI	GACNNNNNNTTYG	2 cut(s)	1127, 1159
AspLEI	GCGC	5 cut(s)	338, 502, 1400, 1460, 1520
AspS9I	GGNCC	1 cut(s)	887
AsuC2I	CCSGG	2 cut(s)	1188, 1283
AsuHPI	GGTGA	7 cut(s)	30, 45, 604, 823, 965, 1026, 1282
AxyI	CCTNAGG	1 cut(s)	311
BalI	TGGCCA	1 cut(s)	1023
BbsI	GAAGAC	1 cut(s)	1297
BbvI	GCAGC	5 cut(s)	350, 1407, 1467, 1497, 1527
BccI	CCATC	3 cut(s)	371, 784, 830
BciT130I	CCWGG	2 cut(s)	951, 1038
BciVI	GTATCC	1 cut(s)	1147
BcnI	CCSGG	2 cut(s)	1188, 1283
BcoDI	GTCTC	1 cut(s)	685
BcuI	ACTAGT	1 cut(s)	137
BfaI	CTAG	3 cut(s)	11, 138, 1011
BfoI	RGCGCY	1 cut(s)	503
BfuI	GTATCC	1 cut(s)	1147
BisI	GCNGC	6 cut(s)	339, 1043, 1396, 1456, 1486, 1516
BlsI	GCNGC	6 cut(s)	340, 1044, 1397, 1457, 1487, 1517
Bme1390I	CCNGG	4 cut(s)	951, 1038, 1188, 1283
BmgT120I	GGNCC	1 cut(s)	887
BmiI	GGNNCC	1 cut(s)	177
BmrFI	CCNGG	4 cut(s)	951, 1038, 1188, 1283
BmsI	GCATC	3 cut(s)	203, 558, 661
BpiI	GAAGAC	1 cut(s)	1297
Bpu10I	CCTNAGC	2 cut(s)	1149, 1240
BpuMI	CCSGG	2 cut(s)	1188, 1283
BsaAI	YACGTR	1 cut(s)	997
BsaHI	GRCGYC	1 cut(s)	360
BsaJI	CCNNGG	3 cut(s)	684, 949, 1037
Bsc4I	CCNNNNNNNGG	2 cut(s)	283, 564
Bse1I	ACTGG	5 cut(s)	144, 902, 1024, 1024, 1591
Bse21I	CCTNAGG	1 cut(s)	311
Bse3DI	GCAATG	1 cut(s)	71
BseBI	CCWGG	2 cut(s)	951, 1038
BseDI	CCNNGG	3 cut(s)	684, 949, 1037
BseGI	GGATG	5 cut(s)	218, 573, 651, 694, 736
BseLI	CCNNNNNNNGG	2 cut(s)	283, 564
BseMI	GCAATG	1 cut(s)	71
BseMII	CTCAG	1 cut(s)	325
BseNI	ACTGG	5 cut(s)	144, 902, 1024, 1024, 1591
BseRI	GAGGAG	1 cut(s)	638
BseXI	GCAGC	5 cut(s)	350, 1407, 1467, 1497, 1527
BsgI	GTGCAG	2 cut(s)	444, 1123
Bsh1236I	CGCG	1 cut(s)	1400
BshFI	GGCC	2 cut(s)	888, 1023
BsiSI	CCGG	3 cut(s)	374, 1188, 1282
BslFI	GGGAC	2 cut(s)	932, 1170
BslI	CCNNNNNNNGG	2 cut(s)	283, 564
BsmAI	GTCTC	1 cut(s)	685
BsmFI	GGGAC	2 cut(s)	932, 1170
BsmI	GAATGC	1 cut(s)	623
BsnI	GGCC	2 cut(s)	888, 1023
Bsp1407I	TGTACA	1 cut(s)	225
Bsp143I	GATC	8 cut(s)	348, 733, 850, 934, 1063, 1126, 1212, 1260
Bsp19I	CCATGG	1 cut(s)	684
BspACI	CCGC	5 cut(s)	564, 636, 815, 1042, 1488
BspANI	GGCC	2 cut(s)	888, 1023
BspCNI	CTCAG	1 cut(s)	324
BspFNI	CGCG	1 cut(s)	1400
BspLI	GGNNCC	1 cut(s)	177
BspPI	GGATC	2 cut(s)	845, 1220
BsrDI	GCAATG	1 cut(s)	71
BsrGI	TGTACA	1 cut(s)	225
BsrI	ACTGG	5 cut(s)	144, 902, 1024, 1024, 1591
BssECI	CCNNGG	3 cut(s)	684, 949, 1037
BssMI	GATC	8 cut(s)	348, 733, 850, 934, 1063, 1126, 1212, 1260
BssNAI	GTATAC	2 cut(s)	583, 1305
BssNI	GRCGYC	1 cut(s)	360
BssT1I	CCWWGG	1 cut(s)	684
Bst1107I	GTATAC	2 cut(s)	583, 1305
Bst2UI	CCWGG	2 cut(s)	951, 1038
Bst4CI	ACNGT	6 cut(s)	254, 863, 1101, 1112, 1322, 1337
BstACI	GRCGYC	1 cut(s)	360
BstAUI	TGTACA	1 cut(s)	225
BstBAI	YACGTR	1 cut(s)	997
BstC8I	GCNNGC	1 cut(s)	498
BstDEI	CTNAG	5 cut(s)	311, 332, 342, 1149, 1240
BstDSI	CCRYGG	1 cut(s)	684
BstENI	CCTNNNNNAGG	1 cut(s)	281
BstF5I	GGATG	5 cut(s)	218, 573, 651, 694, 736
BstFNI	CGCG	1 cut(s)	1400
BstH2I	RGCGCY	1 cut(s)	503
BstHHI	GCGC	5 cut(s)	338, 502, 1400, 1460, 1520
BstKTI	GATC	8 cut(s)	351, 736, 853, 937, 1066, 1129, 1215, 1263
BstMAI	GTCTC	1 cut(s)	685
BstMBI	GATC	8 cut(s)	348, 733, 850, 934, 1063, 1126, 1212, 1260
BstMWI	GCNNNNNNNGC	3 cut(s)	722, 812, 1130
BstNI	CCWGG	2 cut(s)	951, 1038
BstNSI	RCATGY	2 cut(s)	678, 775
BstSCI	CCNGG	4 cut(s)	949, 1036, 1186, 1281
BstSNI	TACGTA	1 cut(s)	997
BstUI	CGCG	1 cut(s)	1400
BstV1I	GCAGC	5 cut(s)	350, 1407, 1467, 1497, 1527
BstV2I	GAAGAC	1 cut(s)	1297
BstX2I	RGATCY	1 cut(s)	1212
BstYI	RGATCY	1 cut(s)	1212
BstZ17I	GTATAC	2 cut(s)	583, 1305
Bsu36I	CCTNAGG	1 cut(s)	311
BsuI	GTATCC	1 cut(s)	1147
BsuRI	GGCC	2 cut(s)	888, 1023
BtgI	CCRYGG	1 cut(s)	684
BtgZI	GCGATG	1 cut(s)	1280
BtsCI	GGATG	5 cut(s)	218, 573, 651, 694, 736
BtsI	GCAGTG	6 cut(s)	720, 1357, 1372, 1432, 1552, 1582
BtsIMutI	CAGTG	8 cut(s)	720, 1031, 1097, 1357, 1372, 1432, 1552, 1582
Cac8I	GCNNGC	1 cut(s)	498
CfoI	GCGC	5 cut(s)	338, 502, 1400, 1460, 1520
Cfr13I	GGNCC	1 cut(s)	887
CseI	GACGC	1 cut(s)	368
Csp6I	GTAC	4 cut(s)	226, 255, 639, 1108
CviQI	GTAC	4 cut(s)	226, 255, 639, 1108
DdeI	CTNAG	5 cut(s)	311, 332, 342, 1149, 1240
DpnI	GATC	8 cut(s)	350, 735, 852, 936, 1065, 1128, 1214, 1262
DpnII	GATC	8 cut(s)	348, 733, 850, 934, 1063, 1126, 1212, 1260
DraI	TTTAAA	1 cut(s)	1341
EaeI	YGGCCR	1 cut(s)	1021
Eco105I	TACGTA	1 cut(s)	997
Eco130I	CCWWGG	1 cut(s)	684
Eco81I	CCTNAGG	1 cut(s)	311
EcoNI	CCTNNNNNAGG	1 cut(s)	281
EcoRII	CCWGG	2 cut(s)	949, 1036
EcoT14I	CCWWGG	1 cut(s)	684
EcoT22I	ATGCAT	1 cut(s)	676
ErhI	CCWWGG	1 cut(s)	684
FaqI	GGGAC	2 cut(s)	932, 1170
FauI	CCCGC	1 cut(s)	557
FblI	GTMKAC	2 cut(s)	582, 1304
Fnu4HI	GCNGC	6 cut(s)	339, 1043, 1396, 1456, 1486, 1516
FokI	GGATG	5 cut(s)	225, 580, 638, 701, 743
Fsp4HI	GCNGC	6 cut(s)	339, 1043, 1396, 1456, 1486, 1516
FspBI	CTAG	3 cut(s)	11, 138, 1011
GlaI	GCGC	5 cut(s)	337, 501, 1399, 1459, 1519
GluI	GCNGC	6 cut(s)	339, 1043, 1396, 1456, 1486, 1516
HaeII	RGCGCY	1 cut(s)	503
HaeIII	GGCC	2 cut(s)	888, 1023
HapII	CCGG	3 cut(s)	374, 1188, 1282
HgaI	GACGC	1 cut(s)	368
HhaI	GCGC	5 cut(s)	338, 502, 1400, 1460, 1520
Hin1I	GRCGYC	1 cut(s)	360
Hin6I	GCGC	5 cut(s)	336, 500, 1398, 1458, 1518
HinP1I	GCGC	5 cut(s)	336, 500, 1398, 1458, 1518
HinfI	GANTC	5 cut(s)	326, 388, 607, 1048, 1402
HpaII	CCGG	3 cut(s)	374, 1188, 1282
HphI	GGTGA	7 cut(s)	30, 45, 604, 823, 965, 1026, 1282
Hpy166II	GTNNAC	5 cut(s)	583, 751, 1175, 1305, 1325
Hpy188I	TCNGA	7 cut(s)	325, 353, 387, 442, 859, 939, 1165
Hpy188III	TCNNGA	4 cut(s)	11, 79, 313, 848
Hpy8I	GTNNAC	5 cut(s)	583, 751, 1175, 1305, 1325
HpyAV	CCTTC	6 cut(s)	66, 190, 277, 539, 864, 925
HpyCH4III	ACNGT	6 cut(s)	254, 863, 1101, 1112, 1322, 1337
HpyCH4IV	ACGT	1 cut(s)	996
HpyF10VI	GCNNNNNNNGC	3 cut(s)	722, 812, 1130
HpyF3I	CTNAG	5 cut(s)	311, 332, 342, 1149, 1240
HpySE526I	ACGT	1 cut(s)	996
Hsp92I	GRCGYC	1 cut(s)	360
HspAI	GCGC	5 cut(s)	336, 500, 1398, 1458, 1518
Kzo9I	GATC	8 cut(s)	348, 733, 850, 934, 1063, 1126, 1212, 1260
LmnI	GCTCC	2 cut(s)	181, 531
Lsp1109I	GCAGC	5 cut(s)	350, 1407, 1467, 1497, 1527
LweI	GCATC	3 cut(s)	203, 558, 661
MaeI	CTAG	3 cut(s)	11, 138, 1011
MaeII	ACGT	1 cut(s)	996
MaeIII	GTNAC	4 cut(s)	36, 68, 613, 1316
MalI	GATC	8 cut(s)	350, 735, 852, 936, 1065, 1128, 1214, 1262
MboI	GATC	8 cut(s)	348, 733, 850, 934, 1063, 1126, 1212, 1260
MboII	GAAGA	4 cut(s)	42, 358, 1255, 1302
MflI	RGATCY	1 cut(s)	1212
MlsI	TGGCCA	1 cut(s)	1023
MluCI	AATT	5 cut(s)	120, 393, 430, 871, 962
MluNI	TGGCCA	1 cut(s)	1023
MlyI	GAGTC	1 cut(s)	1042
MmeI	TCCRAC	2 cut(s)	756, 1040
MnlI	CCTC	9 cut(s)	37, 52, 280, 320, 381, 394, 659, 916, 973
Mox20I	TGGCCA	1 cut(s)	1023
Mph1103I	ATGCAT	1 cut(s)	676
MscI	TGGCCA	1 cut(s)	1023
MseI	TTAA	5 cut(s)	482, 819, 869, 1229, 1340
MslI	CAYNNNNRTG	2 cut(s)	58, 64
Msp20I	TGGCCA	1 cut(s)	1023
MspA1I	CMGCKG	1 cut(s)	1488
MspI	CCGG	3 cut(s)	374, 1188, 1282
MspR9I	CCNGG	4 cut(s)	951, 1038, 1188, 1283
MssI	GTTTAAAC	1 cut(s)	1341
Mva1269I	GAATGC	1 cut(s)	623
MvaI	CCWGG	2 cut(s)	951, 1038
MvnI	CGCG	1 cut(s)	1400
MwoI	GCNNNNNNNGC	3 cut(s)	722, 812, 1130
NciI	CCSGG	2 cut(s)	1188, 1283
NcoI	CCATGG	1 cut(s)	684
NdeII	GATC	8 cut(s)	348, 733, 850, 934, 1063, 1126, 1212, 1260
NlaIV	GGNNCC	1 cut(s)	177
NmuCI	GTSAC	2 cut(s)	36, 1316
NsiI	ATGCAT	1 cut(s)	676
NspI	RCATGY	2 cut(s)	678, 775
PctI	GAATGC	1 cut(s)	623
PfeI	GAWTC	4 cut(s)	326, 388, 607, 1402
PkrI	GCNGC	6 cut(s)	340, 1044, 1397, 1457, 1487, 1517
PleI	GAGTC	1 cut(s)	1042
PmeI	GTTTAAAC	1 cut(s)	1341
PpsI	GAGTC	1 cut(s)	1042
Ppu21I	YACGTR	1 cut(s)	997
Psp6I	CCWGG	2 cut(s)	949, 1036
PspGI	CCWGG	2 cut(s)	949, 1036
PspN4I	GGNNCC	1 cut(s)	177
PspPI	GGNCC	1 cut(s)	887
PsuI	RGATCY	1 cut(s)	1212
RsaI	GTAC	4 cut(s)	227, 256, 640, 1109
RsaNI	GTAC	4 cut(s)	226, 255, 639, 1108
RseI	CAYNNNNRTG	2 cut(s)	58, 64
SaqAI	TTAA	5 cut(s)	482, 819, 869, 1229, 1340
SatI	GCNGC	6 cut(s)	339, 1043, 1396, 1456, 1486, 1516
Sau3AI	GATC	8 cut(s)	348, 733, 850, 934, 1063, 1126, 1212, 1260
Sau96I	GGNCC	1 cut(s)	887
SchI	GAGTC	1 cut(s)	1042
ScrFI	CCNGG	4 cut(s)	951, 1038, 1188, 1283
SfaNI	GCATC	3 cut(s)	203, 558, 661
SmiMI	CAYNNNNRTG	2 cut(s)	58, 64
SnaBI	TACGTA	1 cut(s)	997
SpeI	ACTAGT	1 cut(s)	137
Sse9I	AATT	5 cut(s)	120, 393, 430, 871, 962
SsiI	CCGC	5 cut(s)	564, 636, 815, 1042, 1488
SspMI	CTAG	3 cut(s)	11, 138, 1011
StyD4I	CCNGG	4 cut(s)	949, 1036, 1186, 1281
StyI	CCWWGG	1 cut(s)	684
TaaI	ACNGT	6 cut(s)	254, 863, 1101, 1112, 1322, 1337
TaiI	ACGT	1 cut(s)	999
TaqI	TCGA	2 cut(s)	80, 1062
TasI	AATT	5 cut(s)	120, 393, 430, 871, 962
TatI	WGTACW	2 cut(s)	225, 254
TauI	GCSGC	1 cut(s)	1045
TfiI	GAWTC	4 cut(s)	326, 388, 607, 1402
Tru1I	TTAA	5 cut(s)	482, 819, 869, 1229, 1340
Tru9I	TTAA	5 cut(s)	482, 819, 869, 1229, 1340
TscAI	CASTG	8 cut(s)	727, 1031, 1104, 1357, 1372, 1432, 1552, 1582
TseFI	GTSAC	2 cut(s)	36, 1316
TseI	GCWGC	5 cut(s)	338, 1395, 1455, 1485, 1515
Tsp45I	GTSAC	2 cut(s)	36, 1316
TspDTI	ATGAA	4 cut(s)	48, 115, 309, 616
TspGWI	ACGGA	1 cut(s)	478
TspRI	CASTG	8 cut(s)	727, 1031, 1104, 1357, 1372, 1432, 1552, 1582
XagI	CCTNNNNNAGG	1 cut(s)	281
XbaI	TCTAGA	1 cut(s)	10
XceI	RCATGY	2 cut(s)	678, 775
XcmI	CCANNNNNNNNNTGG	1 cut(s)	662
XmiI	GTMKAC	2 cut(s)	582, 1304
XspI	CTAG	3 cut(s)	11, 138, 1011
Zsp2I	ATGCAT	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.