Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0012554

Physical Location & Seq

Genomic Coordinates Reverse (-)

90705434 .. 90709224

Gene Structure 3791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00154000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

ATGTTCTTCGGCATTAGATCGCCAATCCTGTCGAAACATTTGGTTCTTTTTGTGATCATAACCATCTCCTTCGTCTTTGTTGTTTCAGCTTCTGCAGAAAGCTATCACCTTTCTCACACTATCCGATTGAAAGGGGGAGAGCAAATAAATGATGGTGGGTTGATCACATGGGGAAGAAGGAGGTCTCTTGAAGAAAACGAGACTTTGGTATTGGCTAAGGAAAGGACACGCAGGAAGGACCCTCTAAATAGATTTAAGAAGTACACGGGTGGCTGGAATATAACAGAACGGCATTACTGGGCTTCAGTTGGTTTTACCGCGGCTCCTTTCTTTGTCGCTGCTATTTTGTGTGCTGGATGCGTTGTTCTGTACATGGGTCAGGGATTGTTCTACGACAGTACAAGAAAGACATTGGATTACCTTGTGAAGGAGGCAGATGAAACTGCTCAAAACCTCAGGAATGTGTCAGATTCTCTTAGCGCAGCTAAGAAGATCGGACTTGATGCCATAGTTCCTCCGACAGATATTCAGAATCAAATTGACGAGGGTATGGGAACAATAGAGCATGTTTCCAATTTTCTTTCTGAAACAACTGATAAGACTGCACGGAAGTCAAATCAAGTCTTAACAGACTTGAAGCTGGCGCTCATGGTTTTTTCTGCTGTTATGCTCCTTCTGGTCTTTATTGGATTTGCACTTTCCATGTGCGGGATGCGATTTCTTGTATACTGCTTGGTGATTGTTGGGTGGATTCTTGTTACCTGTACATTCATCTTGTGCGGTACATTTCTCCTCATCCATAATGCGTTTGGAGATGCATGTGTCTCCATGGATGAGTGGATTCAAAAGCACCCCACAGCCCACACTGCTTTGGATGATCTACTTCCATGTGTGGACAAAAATGTAAGCCAGAGCATGTTGGAACGGACCAAGATGGCAACCTACTTTGCTGTTCAAGCGGTTAATCGTGTCATCACCGATGGTGCAAATCTTGATCCTTCTGACAGTCCATTAAATTACAATCAGACTGGCCCTTTATTACCACCAGTCTGCAACCCCTTCAATGAGGATAAAACTGATCGGAAATGTGTCCCTGGTGAAGTGGAATTGCAACAAGCACAAGAGGTATGGCAGAAATACGTATGTAAGGTTTCTAGTCCTACTGGCCAGTGTGTATCACCAGGGCGGCTGACTCCTACCTACTTCGATCAAATGTCAGCTTTTGTAAATGTGAGCAACGCACTGTATCGGTACAGTCCATTCTTTGCTGATCTTGCAGACTGCACATTTGCCAAGGATACATTCTCGGACATAATCCTAAGTGATCTCAAGCGAGCAGAAGCATCATTCTCATTTCCAGAACTATCTCGCAGCGTGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

460

Amino Acids

51.21

Weight (kDa)

6.1

Isoelectric Point (pI)

40.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012554)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01910
malus_domestica	MD02G1017200.v1.1 MD15G1161600.v1.1
prunus_persica	Prupe.7G256700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0086921
rosa_laevigata	RLG00000015817
rosa_multiflora	Rmu_sc0009060.1_g000007
rosa_roxburghii	Rroxscaffold_2G00154000
rosa_rugosa	Rorug01G0470700 Rorug01G0470700 Rorug01G0470800 Rorug01G0470900 Rorug01G0471000 Rorug01G0471000
rosa_samantha	Rh2AG023500 Rh2BG024200 Rh2CG024400 Rh2DG024300
rosa_wichuraiana	Rw2G001860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	726
AccII	CGCG	1 cut(s)	320
AciI	CCGC	6 cut(s)	318, 320, 708, 780, 959, 1186
AclWI	GGATC	1 cut(s)	989
AcoI	YGGCCR	1 cut(s)	1165
AcuI	CTGAAG	1 cut(s)	288
AfaI	GTAC	6 cut(s)	263, 371, 400, 766, 784, 1253
AfiI	CCNNNNNNNGG	2 cut(s)	427, 708
AgsI	TTSAA	6 cut(s)	130, 191, 637, 845, 956, 1063
AjnI	CCWGG	2 cut(s)	1093, 1180
AjuI	GAANNNNNNNTTGG	2 cut(s)	1286, 1318
AloI	GAACNNNNNNTCC	2 cut(s)	348, 380
AluBI	AGCT	5 cut(s)	89, 102, 485, 640, 1220
AluI	AGCT	5 cut(s)	89, 102, 485, 640, 1220
Alw26I	GTCTC	3 cut(s)	189, 194, 829
AlwI	GGATC	1 cut(s)	989
AlwNI	CAGNNNCTG	1 cut(s)	92
AoxI	GGCC	2 cut(s)	1030, 1165
ApeKI	GCWGC	3 cut(s)	338, 482, 1371
ArsI	GACNNNNNNTTYG	2 cut(s)	1271, 1303
AspLEI	GCGC	2 cut(s)	482, 646
AspS9I	GGNCC	3 cut(s)	238, 927, 1031
AsuHPI	GGTGA	5 cut(s)	98, 748, 967, 1109, 1170
AvaII	GGWCC	2 cut(s)	238, 927
AxyI	CCTNAGG	1 cut(s)	455
BalI	TGGCCA	1 cut(s)	1167
BbvI	GCAGC	2 cut(s)	325, 494
BccI	CCATC	4 cut(s)	71, 146, 928, 974
BceAI	ACGGC	1 cut(s)	305
BciT130I	CCWGG	2 cut(s)	1095, 1182
BciVI	GTATCC	1 cut(s)	1291
BclI	TGATCA	2 cut(s)	54, 162
BcoDI	GTCTC	3 cut(s)	189, 194, 829
BfaI	CTAG	1 cut(s)	1155
BfmI	CTRYAG	1 cut(s)	93
BfoI	RGCGCY	1 cut(s)	647
BfuI	GTATCC	1 cut(s)	1291
BisI	GCNGC	5 cut(s)	321, 339, 483, 1187, 1372
BlsI	GCNGC	5 cut(s)	322, 340, 484, 1188, 1373
Bme1390I	CCNGG	2 cut(s)	1095, 1182
Bme18I	GGWCC	2 cut(s)	238, 927
BmgT120I	GGNCC	3 cut(s)	238, 927, 1031
BmiI	GGNNCC	2 cut(s)	240, 324
BmrFI	CCNGG	2 cut(s)	1095, 1182
BmrI	ACTGGG	1 cut(s)	307
BmsI	GCATC	5 cut(s)	347, 493, 702, 805, 1352
BmuI	ACTGGG	1 cut(s)	307
Bpu10I	CCTNAGC	1 cut(s)	216
BpuEI	CTTGAG	1 cut(s)	1313
BsaAI	YACGTR	1 cut(s)	1141
BsaI	GGTCTC	1 cut(s)	189
BsaJI	CCNNGG	5 cut(s)	318, 828, 1093, 1181, 1293
BsaXI	ACNNNNNCTCC	2 cut(s)	307, 337
Bsc4I	CCNNNNNNNGG	2 cut(s)	427, 708
Bse1I	ACTGG	5 cut(s)	302, 1033, 1046, 1168, 1168
Bse21I	CCTNAGG	1 cut(s)	455
BseBI	CCWGG	2 cut(s)	1095, 1182
BseDI	CCNNGG	5 cut(s)	318, 828, 1093, 1181, 1293
BseGI	GGATG	5 cut(s)	362, 717, 795, 838, 880
BseLI	CCNNNNNNNGG	2 cut(s)	427, 708
BseMII	CTCAG	1 cut(s)	469
BseNI	ACTGG	5 cut(s)	302, 1033, 1046, 1168, 1168
BseRI	GAGGAG	1 cut(s)	782
BseXI	GCAGC	2 cut(s)	325, 494
BsgI	GTGCAG	2 cut(s)	588, 1267
Bsh1236I	CGCG	1 cut(s)	320
BshFI	GGCC	2 cut(s)	1032, 1167
BslFI	GGGAC	1 cut(s)	1076
BslI	CCNNNNNNNGG	2 cut(s)	427, 708
BsmAI	GTCTC	3 cut(s)	189, 194, 829
BsmFI	GGGAC	1 cut(s)	1076
BsnI	GGCC	2 cut(s)	1032, 1167
Bso31I	GGTCTC	1 cut(s)	189
Bsp1407I	TGTACA	2 cut(s)	369, 764
Bsp19I	CCATGG	1 cut(s)	828
BspACI	CCGC	6 cut(s)	318, 320, 708, 780, 959, 1186
BspANI	GGCC	2 cut(s)	1032, 1167
BspCNI	CTCAG	1 cut(s)	468
BspFNI	CGCG	1 cut(s)	320
BspLI	GGNNCC	2 cut(s)	240, 324
BspMAI	CTGCAG	1 cut(s)	97
BspPI	GGATC	1 cut(s)	989
BspTNI	GGTCTC	1 cut(s)	189
BsrGI	TGTACA	2 cut(s)	369, 764
BsrI	ACTGG	5 cut(s)	302, 1033, 1046, 1168, 1168
BssECI	CCNNGG	5 cut(s)	318, 828, 1093, 1181, 1293
BssNAI	GTATAC	1 cut(s)	727
BssT1I	CCWWGG	2 cut(s)	828, 1293
Bst1107I	GTATAC	1 cut(s)	727
Bst2UI	CCWGG	2 cut(s)	1095, 1182
Bst4CI	ACNGT	4 cut(s)	398, 1007, 1245, 1256
BstAUI	TGTACA	2 cut(s)	369, 764
BstBAI	YACGTR	1 cut(s)	1141
BstC8I	GCNNGC	2 cut(s)	642, 1335
BstDEI	CTNAG	5 cut(s)	216, 455, 476, 486, 1319
BstDSI	CCRYGG	2 cut(s)	318, 828
BstENI	CCTNNNNNAGG	1 cut(s)	425
BstF5I	GGATG	5 cut(s)	362, 717, 795, 838, 880
BstFNI	CGCG	1 cut(s)	320
BstH2I	RGCGCY	1 cut(s)	647
BstHHI	GCGC	2 cut(s)	482, 646
BstMAI	GTCTC	3 cut(s)	189, 194, 829
BstMWI	GCNNNNNNNGC	3 cut(s)	866, 956, 1274
BstNI	CCWGG	2 cut(s)	1095, 1182
BstNSI	RCATGY	3 cut(s)	569, 822, 919
BstSCI	CCNGG	2 cut(s)	1093, 1180
BstSFI	CTRYAG	1 cut(s)	93
BstSNI	TACGTA	1 cut(s)	1141
BstUI	CGCG	1 cut(s)	320
BstV1I	GCAGC	2 cut(s)	325, 494
BstZ17I	GTATAC	1 cut(s)	727
Bsu36I	CCTNAGG	1 cut(s)	455
BsuI	GTATCC	1 cut(s)	1291
BsuRI	GGCC	2 cut(s)	1032, 1167
BtgI	CCRYGG	2 cut(s)	318, 828
BtsCI	GGATG	5 cut(s)	362, 717, 795, 838, 880
BtsI	GCAGTG	1 cut(s)	864
BtsIMutI	CAGTG	3 cut(s)	864, 1175, 1241
Cac8I	GCNNGC	2 cut(s)	642, 1335
CaiI	CAGNNNCTG	1 cut(s)	92
CfoI	GCGC	2 cut(s)	482, 646
Cfr13I	GGNCC	3 cut(s)	238, 927, 1031
Cfr42I	CCGCGG	1 cut(s)	321
Csp6I	GTAC	6 cut(s)	262, 370, 399, 765, 783, 1252
CviAII	CATG	9 cut(s)	168, 373, 566, 649, 703, 819, 829, 888, 916
CviQI	GTAC	6 cut(s)	262, 370, 399, 765, 783, 1252
DdeI	CTNAG	5 cut(s)	216, 455, 476, 486, 1319
EaeI	YGGCCR	1 cut(s)	1165
Eco105I	TACGTA	1 cut(s)	1141
Eco130I	CCWWGG	2 cut(s)	828, 1293
Eco31I	GGTCTC	1 cut(s)	189
Eco47I	GGWCC	2 cut(s)	238, 927
Eco57I	CTGAAG	1 cut(s)	288
Eco81I	CCTNAGG	1 cut(s)	455
EcoNI	CCTNNNNNAGG	1 cut(s)	425
EcoO109I	RGGNCCY	1 cut(s)	238
EcoRII	CCWGG	2 cut(s)	1093, 1180
EcoT14I	CCWWGG	2 cut(s)	828, 1293
EcoT22I	ATGCAT	1 cut(s)	820
ErhI	CCWWGG	2 cut(s)	828, 1293
FaeI	CATG	9 cut(s)	171, 376, 569, 652, 706, 822, 832, 891, 919
FaqI	GGGAC	1 cut(s)	1076
FatI	CATG	9 cut(s)	167, 372, 565, 648, 702, 818, 828, 887, 915
FauI	CCCGC	1 cut(s)	701
FbaI	TGATCA	2 cut(s)	54, 162
FblI	GTMKAC	1 cut(s)	726
Fnu4HI	GCNGC	5 cut(s)	321, 339, 483, 1187, 1372
FokI	GGATG	5 cut(s)	369, 724, 782, 845, 887
Fsp4HI	GCNGC	5 cut(s)	321, 339, 483, 1187, 1372
FspBI	CTAG	1 cut(s)	1155
GlaI	GCGC	2 cut(s)	481, 645
GluI	GCNGC	5 cut(s)	321, 339, 483, 1187, 1372
HaeII	RGCGCY	1 cut(s)	647
HaeIII	GGCC	2 cut(s)	1032, 1167
HhaI	GCGC	2 cut(s)	482, 646
Hin1II	CATG	9 cut(s)	171, 376, 569, 652, 706, 822, 832, 891, 919
Hin6I	GCGC	2 cut(s)	480, 644
HinP1I	GCGC	2 cut(s)	480, 644
HinfI	GANTC	5 cut(s)	470, 532, 751, 841, 1192
HphI	GGTGA	5 cut(s)	98, 748, 967, 1109, 1170
Hpy166II	GTNNAC	3 cut(s)	264, 727, 895
Hpy188III	TCNNGA	4 cut(s)	188, 457, 992, 1358
Hpy8I	GTNNAC	3 cut(s)	264, 727, 895
HpyAV	CCTTC	7 cut(s)	79, 171, 229, 421, 683, 1008, 1069
HpyCH4III	ACNGT	4 cut(s)	398, 1007, 1245, 1256
HpyCH4IV	ACGT	1 cut(s)	1140
HpyCH4V	TGCA	9 cut(s)	95, 605, 695, 818, 986, 1053, 1111, 1277, 1284
HpyF10VI	GCNNNNNNNGC	3 cut(s)	866, 956, 1274
HpyF3I	CTNAG	5 cut(s)	216, 455, 476, 486, 1319
HpySE526I	ACGT	1 cut(s)	1140
Hsp92II	CATG	9 cut(s)	171, 376, 569, 652, 706, 822, 832, 891, 919
HspAI	GCGC	2 cut(s)	480, 644
Ksp22I	TGATCA	2 cut(s)	54, 162
KspI	CCGCGG	1 cut(s)	321
LmnI	GCTCC	2 cut(s)	328, 675
Lsp1109I	GCAGC	2 cut(s)	325, 494
LweI	GCATC	5 cut(s)	347, 493, 702, 805, 1352
MaeI	CTAG	1 cut(s)	1155
MaeII	ACGT	1 cut(s)	1140
MaeIII	GTNAC	1 cut(s)	757
MboII	GAAGA	3 cut(s)	186, 203, 502
MlsI	TGGCCA	1 cut(s)	1167
MluCI	AATT	4 cut(s)	537, 574, 1015, 1106
MluNI	TGGCCA	1 cut(s)	1167
MlyI	GAGTC	1 cut(s)	1186
MmeI	TCCRAC	2 cut(s)	542, 900
MnlI	CCTC	9 cut(s)	174, 252, 424, 464, 525, 538, 803, 1060, 1117
Mox20I	TGGCCA	1 cut(s)	1167
Mph1103I	ATGCAT	1 cut(s)	820
MscI	TGGCCA	1 cut(s)	1167
MseI	TTAA	4 cut(s)	255, 626, 963, 1013
Msp20I	TGGCCA	1 cut(s)	1167
MspA1I	CMGCKG	1 cut(s)	320
MspR9I	CCNGG	2 cut(s)	1095, 1182
MvaI	CCWGG	2 cut(s)	1095, 1182
MvnI	CGCG	1 cut(s)	320
MwoI	GCNNNNNNNGC	3 cut(s)	866, 956, 1274
NcoI	CCATGG	1 cut(s)	828
NlaIII	CATG	9 cut(s)	171, 376, 569, 652, 706, 822, 832, 891, 919
NlaIV	GGNNCC	2 cut(s)	240, 324
NsiI	ATGCAT	1 cut(s)	820
NspI	RCATGY	3 cut(s)	569, 822, 919
PfeI	GAWTC	4 cut(s)	470, 532, 751, 841
PkrI	GCNGC	5 cut(s)	322, 340, 484, 1188, 1373
PleI	GAGTC	1 cut(s)	1186
PpsI	GAGTC	1 cut(s)	1186
Ppu21I	YACGTR	1 cut(s)	1141
PpuMI	RGGWCCY	1 cut(s)	238
Psp5II	RGGWCCY	1 cut(s)	238
Psp6I	CCWGG	2 cut(s)	1093, 1180
PspGI	CCWGG	2 cut(s)	1093, 1180
PspN4I	GGNNCC	2 cut(s)	240, 324
PspPI	GGNCC	3 cut(s)	238, 927, 1031
PspPPI	RGGWCCY	1 cut(s)	238
PstI	CTGCAG	1 cut(s)	97
PstNI	CAGNNNCTG	1 cut(s)	92
RsaI	GTAC	6 cut(s)	263, 371, 400, 766, 784, 1253
RsaNI	GTAC	6 cut(s)	262, 370, 399, 765, 783, 1252
SacII	CCGCGG	1 cut(s)	321
SaqAI	TTAA	4 cut(s)	255, 626, 963, 1013
SatI	GCNGC	5 cut(s)	321, 339, 483, 1187, 1372
Sau96I	GGNCC	3 cut(s)	238, 927, 1031
SchI	GAGTC	1 cut(s)	1186
ScrFI	CCNGG	2 cut(s)	1095, 1182
SfaNI	GCATC	5 cut(s)	347, 493, 702, 805, 1352
SfcI	CTRYAG	1 cut(s)	93
Sfr303I	CCGCGG	1 cut(s)	321
SgrBI	CCGCGG	1 cut(s)	321
SinI	GGWCC	2 cut(s)	238, 927
SmlI	CTYRAG	1 cut(s)	1328
SmoI	CTYRAG	1 cut(s)	1328
SnaBI	TACGTA	1 cut(s)	1141
Sse9I	AATT	4 cut(s)	537, 574, 1015, 1106
SsiI	CCGC	6 cut(s)	318, 320, 708, 780, 959, 1186
SspMI	CTAG	1 cut(s)	1155
StyD4I	CCNGG	2 cut(s)	1093, 1180
StyI	CCWWGG	2 cut(s)	828, 1293
TaaI	ACNGT	4 cut(s)	398, 1007, 1245, 1256
TaiI	ACGT	1 cut(s)	1143
TaqI	TCGA	2 cut(s)	32, 1206
TasI	AATT	4 cut(s)	537, 574, 1015, 1106
TatI	WGTACW	4 cut(s)	261, 369, 398, 764
TauI	GCSGC	2 cut(s)	323, 1189
TfiI	GAWTC	4 cut(s)	470, 532, 751, 841
Tru1I	TTAA	4 cut(s)	255, 626, 963, 1013
Tru9I	TTAA	4 cut(s)	255, 626, 963, 1013
TscAI	CASTG	3 cut(s)	871, 1175, 1248
TseI	GCWGC	3 cut(s)	338, 482, 1371
TspDTI	ATGAA	2 cut(s)	453, 760
TspGWI	ACGGA	2 cut(s)	622, 940
TspRI	CASTG	3 cut(s)	871, 1175, 1248
VpaK11BI	GGWCC	2 cut(s)	238, 927
XagI	CCTNNNNNAGG	1 cut(s)	425
XceI	RCATGY	3 cut(s)	569, 822, 919
XcmI	CCANNNNNNNNNTGG	1 cut(s)	806
XmiI	GTMKAC	1 cut(s)	726
XspI	CTAG	1 cut(s)	1155
Zsp2I	ATGCAT	1 cut(s)	820

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.