Rorug01G0470800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0012554
Physical Location & Seq
Forward (+)
56216181 .. 56217224
1044 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0470800.1

Sequence Viewer

Length: 1044 bp
ATGGAGATTGCTCGGGGGGTCGGAACTCCATTGCAAATTGATAAAGCCACAAGGGAAAGACAATTTGGCTACTTTGCTAGAGTCTTAATTGATGTGGATCTTGCTGGTGAACTACCACCTTCTTTGATGGTTGAGCGTGAAACTCATTGTTTTCAAATTGAAGTAGTCTATGAGAATGTGTGTACTCATTGTGGGAGGGTTGGCCACATGGCTGACCAATGCAGGGCCTTGAAGAGCTCTAACAAAGAGCAAAATGCTCAAGTACAAAAGGCAGTTAAAAAGCCTTCTCTCATTGGGCGTCAAGAGTATCGTCCCAGGACGGCTGTAAACAATGTTTCTGAGCAAAACTTGGACACTACTCCTCAGGTGCAACTCTCCCCTGATGTTGCAAACCATGAACAGATTACTAAATTTGCAGAAGATGTTCTCACTGAGGCCATTGACCAGGAATTGGATCGTATTGCAGATTTGGTCATTATTGAACCCATAACCAACGGGAAGGCTGGATGTTGTAGAGGCAACATAACTCCTCTTATCAATATGAATAATTCTGTCATCCTTGCAAATAAGGAAACTGAAGCAGGGGTTGACACTACTCCTAATGATTTTGTTGTAGTTGTTGGTCCAACTATTTTGGAGGACCCTTCGGTCAATATTTCTGATGAGGATGATGAAGTTGAGATGTGTGATGATGATGTGAGCTCCAACATGGAGCTAAATGCTTATAGTACTGCCCAGCCAACCAACCCCCTTTCACATAGTGGTCAGAGTTGGCATGATATGGTGGAAGAGGAAAATATTATTGATCTGGCAGATTTAGCTACGGGTCTTGCTCCCCCGGGATTCGAACATGTTGCAACTTTAGCCAAGGATGTCTCATTAATTACTGGTCATGGGGATAACGGAGATACAGAGAATGGTTTCACACCGGTTCTCTCTAAGTCTCAACAGAAGAAACAAAGACGACAAGCTACTCTAGCTCTTGCTCGTGAAAACCCTTATCCAAAGAGGGACAGAACAAAGAATAAAAAGTACAATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

347

Amino Acids

38.32

Weight (kDa)

4.81

Isoelectric Point (pI)

36.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 647
AccB7I CCANNNNNTGG 1 cut(s) 451
AclWI GGATC 2 cut(s) 105, 462
AcoI YGGCCR 1 cut(s) 202
AcsI RAATTY 1 cut(s) 410
AcuI CTGAAG 1 cut(s) 597
AcyI GRCGYC 1 cut(s) 298
AdeI CACNNNGTG 1 cut(s) 761
AfaI GTAC 4 cut(s) 184, 264, 730, 1034
AfiI CCNNNNNNNGG 2 cut(s) 223, 451
AflIII ACRYGT 1 cut(s) 850
AgeI ACCGGT 1 cut(s) 928
AgsI TTSAA 4 cut(s) 155, 161, 232, 482
AjnI CCWGG 2 cut(s) 314, 444
AjuI GAANNNNNNNTTGG 2 cut(s) 48, 80
AluBI AGCT 6 cut(s) 237, 702, 715, 821, 971, 980
AluI AGCT 6 cut(s) 237, 702, 715, 821, 971, 980
Alw21I GWGCWC 2 cut(s) 239, 704
Alw26I GTCTC 2 cut(s) 880, 948
AlwI GGATC 2 cut(s) 105, 462
Ama87I CYCGRG 2 cut(s) 12, 838
AoxI GGCC 3 cut(s) 202, 225, 435
ApoI RAATTY 1 cut(s) 410
AseI ATTAAT 1 cut(s) 881
AsiGI ACCGGT 1 cut(s) 928
Asp700I GAANNNNTTC 2 cut(s) 423, 920
AspS9I GGNCC 3 cut(s) 225, 623, 640
AsuC2I CCSGG 2 cut(s) 839, 840
AsuHPI GGTGA 1 cut(s) 119
AsuII TTCGAA 1 cut(s) 846
AvaI CYCGRG 2 cut(s) 12, 838
AvaII GGWCC 2 cut(s) 623, 640
AxyI CCTNAGG 1 cut(s) 363
BalI TGGCCA 1 cut(s) 204
BanII GRGCYC 2 cut(s) 239, 704
BauI CACGAG 1 cut(s) 987
Bbv12I GWGCWC 2 cut(s) 239, 704
BccI CCATC 1 cut(s) 121
BceAI ACGGC 1 cut(s) 336
BcgI CGANNNNNNTGC 2 cut(s) 836, 870
BciT130I CCWGG 2 cut(s) 316, 446
BcnI CCSGG 2 cut(s) 839, 840
BcoDI GTCTC 2 cut(s) 880, 948
BfaI CTAG 2 cut(s) 78, 977
BmcAI AGTACT 1 cut(s) 730
Bme1390I CCNGG 4 cut(s) 316, 446, 839, 840
Bme18I GGWCC 2 cut(s) 623, 640
BmeT110I CYCGRG 2 cut(s) 12, 838
BmgT120I GGNCC 3 cut(s) 225, 623, 640
BmiI GGNNCC 1 cut(s) 642
BmrFI CCNGG 4 cut(s) 316, 446, 839, 840
Bpu14I TTCGAA 1 cut(s) 846
BpuEI CTTGAG 1 cut(s) 243
BpuMI CCSGG 2 cut(s) 839, 840
BsaBI GATNNNNATC 1 cut(s) 96
BsaHI GRCGYC 1 cut(s) 298
BsaJI CCNNGG 4 cut(s) 314, 837, 838, 867
BsaWI WCCGGW 1 cut(s) 928
Bsc4I CCNNNNNNNGG 2 cut(s) 223, 451
Bse118I RCCGGY 1 cut(s) 928
Bse1I ACTGG 1 cut(s) 892
Bse21I CCTNAGG 1 cut(s) 363
Bse3DI GCAATG 1 cut(s) 29
Bse8I GATNNNNATC 1 cut(s) 96
BseBI CCWGG 2 cut(s) 316, 446
BseDI CCNNGG 4 cut(s) 314, 837, 838, 867
BseGI GGATG 4 cut(s) 512, 555, 673, 877
BseJI GATNNNNATC 1 cut(s) 96
BseLI CCNNNNNNNGG 2 cut(s) 223, 451
BseMI GCAATG 1 cut(s) 29
BseMII CTCAG 3 cut(s) 330, 377, 423
BseNI ACTGG 1 cut(s) 892
BseRI GAGGAG 2 cut(s) 351, 519
BseYI CCCAGC 1 cut(s) 735
BshFI GGCC 3 cut(s) 204, 227, 437
BshTI ACCGGT 1 cut(s) 928
BsiHKAI GWGCWC 2 cut(s) 239, 704
BsiHKCI CYCGRG 2 cut(s) 12, 838
BsiSI CCGG 2 cut(s) 839, 929
BslFI GGGAC 2 cut(s) 297, 1025
BslI CCNNNNNNNGG 2 cut(s) 223, 451
BsmAI GTCTC 2 cut(s) 880, 948
BsmFI GGGAC 2 cut(s) 297, 1025
BsnI GGCC 3 cut(s) 204, 227, 437
BsoBI CYCGRG 2 cut(s) 12, 838
Bsp119I TTCGAA 1 cut(s) 846
Bsp1286I GDGCHC 2 cut(s) 239, 704
Bsp143I GATC 3 cut(s) 97, 454, 805
BspANI GGCC 3 cut(s) 204, 227, 437
BspCNI CTCAG 3 cut(s) 331, 376, 424
BspLI GGNNCC 1 cut(s) 642
BspPI GGATC 2 cut(s) 105, 462
BspQI GCTCTTC 1 cut(s) 227
BspT104I TTCGAA 1 cut(s) 846
BsrDI GCAATG 1 cut(s) 29
BsrFI RCCGGY 1 cut(s) 928
BsrI ACTGG 1 cut(s) 892
BssAI RCCGGY 1 cut(s) 928
BssECI CCNNGG 4 cut(s) 314, 837, 838, 867
BssMI GATC 3 cut(s) 97, 454, 805
BssNI GRCGYC 1 cut(s) 298
BssSI CACGAG 1 cut(s) 987
BssT1I CCWWGG 1 cut(s) 867
Bst2BI CACGAG 1 cut(s) 987
Bst2UI CCWGG 2 cut(s) 316, 446
Bst6I CTCTTC 2 cut(s) 227, 783
BstACI GRCGYC 1 cut(s) 298
BstBI TTCGAA 1 cut(s) 846
BstDEI CTNAG 4 cut(s) 339, 363, 432, 939
BstF5I GGATG 4 cut(s) 512, 555, 673, 877
BstKTI GATC 3 cut(s) 100, 457, 808
BstMAI GTCTC 2 cut(s) 880, 948
BstMBI GATC 3 cut(s) 97, 454, 805
BstMWI GCNNNNNNNGC 3 cut(s) 818, 863, 977
BstNI CCWGG 2 cut(s) 316, 446
BstNSI RCATGY 1 cut(s) 854
BstSCI CCNGG 4 cut(s) 314, 444, 837, 838
BstX2I RGATCY 1 cut(s) 97
BstYI RGATCY 1 cut(s) 97
Bsu36I CCTNAGG 1 cut(s) 363
BsuRI GGCC 3 cut(s) 204, 227, 437
BtsCI GGATG 4 cut(s) 512, 555, 673, 877
BtsIMutI CAGTG 1 cut(s) 429
Cfr10I RCCGGY 1 cut(s) 928
Cfr13I GGNCC 3 cut(s) 225, 623, 640
Cfr9I CCCGGG 1 cut(s) 838
CseI GACGC 1 cut(s) 287
Csp6I GTAC 4 cut(s) 183, 263, 729, 1033
CspAI ACCGGT 1 cut(s) 928
CspCI CAANNNNNGTGG 2 cut(s) 105, 140
CviAII CATG 6 cut(s) 208, 395, 709, 776, 851, 893
CviQI GTAC 4 cut(s) 183, 263, 729, 1033
DdeI CTNAG 4 cut(s) 339, 363, 432, 939
DpnI GATC 3 cut(s) 99, 456, 807
DpnII GATC 3 cut(s) 97, 454, 805
DraIII CACNNNGTG 1 cut(s) 761
DrdI GACNNNNNNGTC 1 cut(s) 647
DseDI GACNNNNNNGTC 1 cut(s) 647
EaeI YGGCCR 1 cut(s) 202
Eam1104I CTCTTC 2 cut(s) 227, 783
EarI CTCTTC 2 cut(s) 227, 783
Ecl136II GAGCTC 2 cut(s) 237, 702
Eco130I CCWWGG 1 cut(s) 867
Eco24I GRGCYC 2 cut(s) 239, 704
Eco47I GGWCC 2 cut(s) 623, 640
Eco53kI GAGCTC 2 cut(s) 237, 702
Eco57I CTGAAG 1 cut(s) 597
Eco81I CCTNAGG 1 cut(s) 363
Eco88I CYCGRG 2 cut(s) 12, 838
EcoICRI GAGCTC 2 cut(s) 237, 702
EcoO109I RGGNCCY 2 cut(s) 225, 640
EcoRII CCWGG 2 cut(s) 314, 444
EcoT14I CCWWGG 1 cut(s) 867
EcoT38I GRGCYC 2 cut(s) 239, 704
ErhI CCWWGG 1 cut(s) 867
FaeI CATG 6 cut(s) 211, 398, 712, 779, 854, 896
FaqI GGGAC 2 cut(s) 297, 1025
FatI CATG 6 cut(s) 207, 394, 708, 775, 850, 892
FokI GGATG 4 cut(s) 519, 542, 680, 884
FriOI GRGCYC 2 cut(s) 239, 704
FspBI CTAG 2 cut(s) 78, 977
GsaI CCCAGC 1 cut(s) 739
HaeIII GGCC 3 cut(s) 204, 227, 437
HapII CCGG 2 cut(s) 839, 929
HgaI GACGC 1 cut(s) 287
Hin1I GRCGYC 1 cut(s) 298
Hin1II CATG 6 cut(s) 211, 398, 712, 779, 854, 896
HincII GTYRAC 1 cut(s) 589
HindII GTYRAC 1 cut(s) 589
HinfI GANTC 2 cut(s) 81, 843
HpaII CCGG 2 cut(s) 839, 929
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 4 cut(s) 110, 183, 328, 589
Hpy188I TCNGA 4 cut(s) 23, 340, 661, 768
Hpy188III TCNNGA 2 cut(s) 302, 989
Hpy8I GTNNAC 4 cut(s) 110, 183, 328, 589
HpyAV CCTTC 4 cut(s) 129, 294, 493, 654
HpyCH4V TGCA 8 cut(s) 34, 222, 370, 389, 416, 464, 563, 857
HpyF10VI GCNNNNNNNGC 3 cut(s) 818, 863, 977
HpyF3I CTNAG 4 cut(s) 339, 363, 432, 939
Hsp92I GRCGYC 1 cut(s) 298
Hsp92II CATG 6 cut(s) 211, 398, 712, 779, 854, 896
Kzo9I GATC 3 cut(s) 97, 454, 805
LguI GCTCTTC 1 cut(s) 227
LmnI GCTCC 3 cut(s) 707, 712, 838
MaeI CTAG 2 cut(s) 78, 977
MalI GATC 3 cut(s) 99, 456, 807
MboI GATC 3 cut(s) 97, 454, 805
MboII GAAGA 4 cut(s) 244, 431, 800, 964
MflI RGATCY 1 cut(s) 97
MhlI GDGCHC 2 cut(s) 239, 704
MlsI TGGCCA 1 cut(s) 204
MluCI AATT 8 cut(s) 36, 62, 87, 156, 410, 449, 547, 882
MluNI TGGCCA 1 cut(s) 204
MlyI GAGTC 1 cut(s) 90
MmeI TCCRAC 2 cut(s) 650, 729
MnlI CCTC 9 cut(s) 189, 372, 427, 509, 540, 631, 658, 784, 1002
Mox20I TGGCCA 1 cut(s) 204
MroXI GAANNNNTTC 2 cut(s) 423, 920
MscI TGGCCA 1 cut(s) 204
MseI TTAA 3 cut(s) 86, 276, 881
Msp20I TGGCCA 1 cut(s) 204
MspI CCGG 2 cut(s) 839, 929
MspR9I CCNGG 4 cut(s) 316, 446, 839, 840
MvaI CCWGG 2 cut(s) 316, 446
MwoI GCNNNNNNNGC 3 cut(s) 818, 863, 977
NciI CCSGG 2 cut(s) 839, 840
NdeII GATC 3 cut(s) 97, 454, 805
NlaIII CATG 6 cut(s) 211, 398, 712, 779, 854, 896
NlaIV GGNNCC 1 cut(s) 642
NspI RCATGY 1 cut(s) 854
NspV TTCGAA 1 cut(s) 846
PciI ACATGT 1 cut(s) 850
PciSI GCTCTTC 1 cut(s) 227
PdmI GAANNNNTTC 2 cut(s) 423, 920
PfeI GAWTC 1 cut(s) 843
PflMI CCANNNNNTGG 1 cut(s) 451
PinAI ACCGGT 1 cut(s) 928
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
PpuMI RGGWCCY 1 cut(s) 640
PscI ACATGT 1 cut(s) 850
PshBI ATTAAT 1 cut(s) 881
Psp124BI GAGCTC 2 cut(s) 239, 704
Psp5II RGGWCCY 1 cut(s) 640
Psp6I CCWGG 2 cut(s) 314, 444
PspFI CCCAGC 1 cut(s) 735
PspGI CCWGG 2 cut(s) 314, 444
PspN4I GGNNCC 1 cut(s) 642
PspPI GGNCC 3 cut(s) 225, 623, 640
PspPPI RGGWCCY 1 cut(s) 640
PsuI RGATCY 1 cut(s) 97
RsaI GTAC 4 cut(s) 184, 264, 730, 1034
RsaNI GTAC 4 cut(s) 183, 263, 729, 1033
SacI GAGCTC 2 cut(s) 239, 704
SapI GCTCTTC 1 cut(s) 227
SaqAI TTAA 3 cut(s) 86, 276, 881
Sau3AI GATC 3 cut(s) 97, 454, 805
Sau96I GGNCC 3 cut(s) 225, 623, 640
ScaI AGTACT 1 cut(s) 730
SchI GAGTC 1 cut(s) 90
ScrFI CCNGG 4 cut(s) 316, 446, 839, 840
SduI GDGCHC 2 cut(s) 239, 704
SetI ASST 8 cut(s) 121, 239, 369, 704, 717, 823, 973, 982
SfuI TTCGAA 1 cut(s) 846
SinI GGWCC 2 cut(s) 623, 640
SmaI CCCGGG 1 cut(s) 840
SmlI CTYRAG 1 cut(s) 258
SmoI CTYRAG 1 cut(s) 258
Sse9I AATT 8 cut(s) 36, 62, 87, 156, 410, 449, 547, 882
SspI AATATT 2 cut(s) 655, 799
SspMI CTAG 2 cut(s) 78, 977
SstI GAGCTC 2 cut(s) 239, 704
StyD4I CCNGG 4 cut(s) 314, 444, 837, 838
StyI CCWWGG 1 cut(s) 867
TaqI TCGA 1 cut(s) 846
TaqII GACCGA 1 cut(s) 637
TasI AATT 8 cut(s) 36, 62, 87, 156, 410, 449, 547, 882
TatI WGTACW 4 cut(s) 182, 262, 728, 1032
TfiI GAWTC 1 cut(s) 843
Tru1I TTAA 3 cut(s) 86, 276, 881
Tru9I TTAA 3 cut(s) 86, 276, 881
TscAI CASTG 1 cut(s) 436
TspDTI ATGAA 3 cut(s) 411, 557, 687
TspGWI ACGGA 1 cut(s) 918
TspMI CCCGGG 1 cut(s) 838
TspRI CASTG 1 cut(s) 436
Van91I CCANNNNNTGG 1 cut(s) 451
VpaK11BI GGWCC 2 cut(s) 623, 640
VspI ATTAAT 1 cut(s) 881
XapI RAATTY 1 cut(s) 410
XceI RCATGY 1 cut(s) 854
XmaI CCCGGG 1 cut(s) 838
XmnI GAANNNNTTC 2 cut(s) 423, 920
XspI CTAG 2 cut(s) 78, 977
ZrmI AGTACT 1 cut(s) 730
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.