FvH4_1g02480

Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0009494
Physical Location & Seq
Forward (+)
1381680 .. 1384923
3244 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g02480.t1

Sequence Viewer

Length: 2253 bp
ATGCAGCGTTGTGATGTTTTCTGTGGAATCATCGGTTCAGATCAGGCCGAGATGAACGAGACGGAGAGTGAATCACCTTCCGACGGCAACGCGGTGGACCGGAACTGCGGCGGCGAGGGATTTGAACCGGTTGCGATCTCCGATGACCGGATTTGGGAGCTTGATGTTCCGGAAAGGAATCAGATGTATGATGGAATTAGTGTTAGATTAGATGATGAGAGTAGGTGGATATGTAATCAACTGGCCAGTGGTGCATTGTTGGGCAAGAACAAGGCCTTCTTTTCGTTCTTTGCTTTTTGCGAAAGCAAGATGAGTGGAGTGGAGTTTGATCCAGTGAGTAGCTTGTGGATTTATTCGATAAGCAAGGATGACATCAGAAGATTTTTGGAGATTCACCATGGGCAGAAGTTGGATGGGATTCGGGTATTCCGTTTATTGCTTTGTATCGGAAAGAGGAGTGTGCAAGTCTATTGCAGGATCCAGAACACATTGGATAGGATGGTACTATGGGCAATTCGAGATTTGCACAGAGACTGGCTTTTGCTTCAGAAACGGAAACGTGCTTCGCGATTGTTGTATGATGAGCAATTTGAGGAAGAATCTCGGTGTATACATGACGAGATCAGACTGACTTTAATTCATCAGCATTTTGAATCAATTGTAAAGTCATTAAAGAGTGCAGAATCAGAGACAGAGGTTGATGATGTTCACACCAAGTTTGAATTGCATTTCCCTGTGGGGGTTCAGATACATTTGGGTGTGGGACAATGTAAGAGGCTCAAGACAGAAGAATCGCTTTATAGTAAATGCAGAAAGGCTGGCCTATGGAAATTTGCAAGTAAATTTGGTTACAGCTCAGAGGTGTTTGGATTCGAGGTGTCACTAGACAGTACAATGAGAATGGATCCTGAGGAGACACCTGAAGAGATGGCATCCGACTTTACATGTGCAGAGTTTGAGACACCTCAAGCCGTCCTCAAAGGAGCTAGGCATATGGCTGCTCTTGAGATAAGTTGTGAGCCGCTTATGAGAAATTATGTCCGAAGCAAGTACTTGGATAGTCTTGAGTTGTCAACACATCCAAAAACACCTGATGGAAATGCAATAGATTCTATTTTTCAAAGAAAGCCACTGCACAGGCTTGACGATGCACAATGGTTGCTTCTTCAGAAGGCTGAAAAGGATGATCTTATTGGTGTTACTTTTGAGCTGCCGGAAGACGGACCAAATAAGTTGTTAAGCGACTTTGAGAAGTTTTATCTTAGAGCCAGTGTAAGTAAATCTGCACAACTATGGAACGAGCAGCGGAAATTGATATTGCAGGACGCTATATATGATTTCCTTCTACCTCTAATGGAGAAAGAAGCAAGATCCATGTTGACCAGTAGAGCAAAAAGCTGGTTACTGATGGAATATGGAAACGTTCTTTGGAATAAAGTTTCTATGACTCCAGCATATCAACATAAGAAAGATCAGATTAAGTCAGATGAAGCTTCTGCTGCCCCGACGGTCATGGCTTGCTGTTGGGGTGAAGCTGAAACTACTTTAGTGATGTTAGATTCATATGGGGAACTGCTAGATGTGCTTTGTATAAGTCCTTTTTCCTGGGAGTCTTACTACACTGGAGATGGCAACTATACTGTTGATAGGCTGGGTACTTATGATGAAAGAAAACGGGTTTGGAAGTTTGTGGCTGATCACCAACCAAGTGTTGTGGTTATTGGAGCTGTTAATATGTCTTGTGTTCTCATAAGACAGTATATGCTTTCGGTAAAAGCAAAACTGAGTACTGGAACTGGAGCTATTCGTCCCTTCAGGATTGTTTTTGGGGATGAATCTTTGGGTCGCCTGTATGAAAATTCTCAGACTTCTTCCAATCAGCTACCTGGGCAATCAGGTACTGTCAAGCGGGCAGTGGCTCTCGGGCGTTATCTTCAAAATCCACTAGCAATGGTTGCCACACTCTGTGGGCCTGAAAGAGATATTCTATCTTGGAAATTGCTCAATTCCCCTTTTGAAGATGTTCTCACCCCGGACGAGAAGTACAAGATGATTGAACAAGTCATGGTAGATGTTACAAACCAAGTAGGCTTAGACATAAATTTGGCTATAAACCATCAATGGTTGTTTGCACCTTTGCAATTCATTTCCGGACTTGGACCTAGAAACAGGAGCGGAGGCATTCACAGGCCTTGGATGGCCCTGGCACCCCTCAACTTGGAATTATATACGTACATTCCCTTTTTATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000785 GO:0000988 GO:0000990 GO:0000991 GO:0002637 GO:0002682 GO:0002694 GO:0002697 GO:0002700 GO:0002703 GO:0002706 GO:0002712 GO:0002819 GO:0002822 GO:0002889 GO:0003006 GO:0003674 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006325 GO:0006338 GO:0006342 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0010793 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030054 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031491 GO:0031974 GO:0031981 GO:0032239 GO:0032268 GO:0032269 GO:0032386 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032786 GO:0032879 GO:0032880 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0033157 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034728 GO:0035327 GO:0040029 GO:0042393 GO:0042789 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0043954 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045191 GO:0045595 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0046822 GO:0046825 GO:0046831 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050684 GO:0050776 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0051049 GO:0051052 GO:0051128 GO:0051129 GO:0051147 GO:0051171 GO:0051172 GO:0051173 GO:0051223 GO:0051239 GO:0051246 GO:0051248 GO:0051249 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0055044 GO:0060255 GO:0060341 GO:0061085 GO:0061086 GO:0061458 GO:0065007 GO:0070013 GO:0070201 GO:0070827 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902275 GO:1902679 GO:1902680 GO:1903311 GO:1903506 GO:1903507 GO:1903508 GO:1903827 GO:1905268 GO:2000026 GO:2000112 GO:2000113 GO:2000197 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DLD HHH_7 HTH_44 SH2_2 SPT6_acidic YqgF

Protein Analysis

751

Amino Acids

85.64

Weight (kDa)

5.46

Isoelectric Point (pI)

45.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YqgF PF14639 516 - 656 6.9e-10 Holliday-junction resolvase-like of SPT6
HHH_7 PF14635 661 - 723 2.2e-09 Helix-hairpin-helix motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 2206
AccBSI CCGCTC 1 cut(s) 2175
AccI GTMKAC 1 cut(s) 610
AccII CGCG 2 cut(s) 92, 568
AccIII TCCGGA 2 cut(s) 169, 2150
AciI CCGC 7 cut(s) 92, 108, 111, 1022, 1306, 1909, 2175
AclI AACGTT 1 cut(s) 1422
AclWI GGATC 6 cut(s) 323, 472, 485, 899, 912, 1365
AcoI YGGCCR 1 cut(s) 243
AcsI RAATTY 4 cut(s) 830, 842, 1858, 2101
AcuI CTGAAG 4 cut(s) 530, 942, 1151, 1798
AdeI CACNNNGTG 1 cut(s) 1967
AfaI GTAC 8 cut(s) 504, 892, 1052, 1657, 1789, 1900, 2045, 2234
AfiI CCNNNNNNNGG 6 cut(s) 83, 147, 154, 739, 1220, 2218
AflIII ACRYGT 1 cut(s) 944
AgeI ACCGGT 1 cut(s) 127
AgsI TTSAA 7 cut(s) 125, 653, 722, 1121, 1937, 2018, 2057
AjnI CCWGG 3 cut(s) 1604, 1885, 2202
AjuI GAANNNNNNNTTGG 4 cut(s) 1411, 1443, 1663, 1695
Alw26I GTCTC 5 cut(s) 53, 525, 683, 908, 953
AlwI GGATC 6 cut(s) 323, 472, 485, 899, 912, 1365
AlwNI CAGNNNCTG 2 cut(s) 534, 1901
Ama87I CYCGRG 1 cut(s) 1922
Aor13HI TCCGGA 2 cut(s) 169, 2150
AoxI GGCC 7 cut(s) 45, 243, 273, 820, 1970, 2189, 2199
ApeKI GCWGC 5 cut(s) 4, 998, 1210, 1303, 1499
ApoI RAATTY 4 cut(s) 830, 842, 1858, 2101
AsiGI ACCGGT 1 cut(s) 127
Asp700I GAANNNNTTC 1 cut(s) 2022
AspS9I GGNCC 5 cut(s) 97, 1223, 1970, 2159, 2200
AsuC2I CCSGG 1 cut(s) 2033
AsuHPI GGTGA 5 cut(s) 66, 386, 1541, 1691, 2020
AvaI CYCGRG 1 cut(s) 1922
AvaII GGWCC 3 cut(s) 97, 1223, 2159
AxyI CCTNAGG 1 cut(s) 909
BalI TGGCCA 1 cut(s) 245
BamHI GGATCC 2 cut(s) 477, 904
BanI GGYRCC 1 cut(s) 2206
BbsI GAAGAC 1 cut(s) 1224
BbvI GCAGC 5 cut(s) 16, 985, 1197, 1315, 1486
BccI CCATC 9 cut(s) 185, 407, 493, 922, 1088, 1402, 1622, 2124, 2191
BceAI ACGGC 2 cut(s) 100, 956
BciT130I CCWGG 3 cut(s) 1606, 1887, 2204
BclI TGATCA 1 cut(s) 1696
BcnI CCSGG 1 cut(s) 2033
BcoDI GTCTC 5 cut(s) 53, 525, 683, 908, 953
BfaI CTAG 5 cut(s) 884, 987, 1577, 1946, 2163
BisI GCNGC 8 cut(s) 5, 109, 112, 999, 1022, 1211, 1304, 1500
BlsI GCNGC 8 cut(s) 6, 110, 113, 1000, 1023, 1212, 1305, 1501
BmcAI AGTACT 2 cut(s) 1052, 1789
Bme1390I CCNGG 4 cut(s) 1606, 1887, 2033, 2204
Bme18I GGWCC 3 cut(s) 97, 1223, 2159
BmeT110I CYCGRG 1 cut(s) 1922
BmgT120I GGNCC 5 cut(s) 97, 1223, 1970, 2159, 2200
BmiI GGNNCC 3 cut(s) 479, 906, 2208
BmrFI CCNGG 4 cut(s) 1606, 1887, 2033, 2204
BmsI GCATC 2 cut(s) 941, 1138
BpiI GAAGAC 1 cut(s) 1224
BpmI CTGGAG 3 cut(s) 1434, 1644, 1818
BpuEI CTTGAG 4 cut(s) 764, 951, 1025, 1085
BpuMI CCSGG 1 cut(s) 2033
BsaAI YACGTR 1 cut(s) 2232
BsaJI CCNNGG 6 cut(s) 397, 1605, 1886, 2031, 2192, 2202
BsaWI WCCGGW 5 cut(s) 99, 127, 147, 169, 2150
Bsc4I CCNNNNNNNGG 6 cut(s) 83, 147, 154, 739, 1220, 2218
Bse118I RCCGGY 1 cut(s) 127
Bse1I ACTGG 9 cut(s) 246, 246, 332, 539, 1269, 1383, 1627, 1795, 1801
Bse21I CCTNAGG 1 cut(s) 909
Bse3DI GCAATG 1 cut(s) 1956
BseAI TCCGGA 2 cut(s) 169, 2150
BseBI CCWGG 3 cut(s) 1606, 1887, 2204
BseDI CCNNGG 6 cut(s) 397, 1605, 1886, 2031, 2192, 2202
BseGI GGATG 8 cut(s) 373, 418, 504, 932, 1078, 1189, 1837, 2202
BseLI CCNNNNNNNGG 6 cut(s) 83, 147, 154, 739, 1220, 2218
BseMI GCAATG 1 cut(s) 1956
BseMII CTCAG 4 cut(s) 870, 900, 1775, 1877
BseNI ACTGG 9 cut(s) 246, 246, 332, 539, 1269, 1383, 1627, 1795, 1801
BseRI GAGGAG 2 cut(s) 469, 926
BseXI GCAGC 5 cut(s) 16, 985, 1197, 1315, 1486
BseYI CCCAGC 1 cut(s) 1651
BsgI GTGCAG 4 cut(s) 699, 969, 1118, 1269
Bsh1236I CGCG 2 cut(s) 92, 568
BshFI GGCC 7 cut(s) 47, 245, 275, 822, 1972, 2191, 2201
BshNI GGYRCC 1 cut(s) 2206
BshTI ACCGGT 1 cut(s) 127
BsiHKCI CYCGRG 1 cut(s) 1922
BsiSI CCGG 7 cut(s) 100, 128, 148, 170, 1214, 2033, 2151
BslFI GGGAC 2 cut(s) 777, 1794
BslI CCNNNNNNNGG 6 cut(s) 83, 147, 154, 739, 1220, 2218
BsmAI GTCTC 5 cut(s) 53, 525, 683, 908, 953
BsmBI CGTCTC 1 cut(s) 53
BsmFI GGGAC 2 cut(s) 777, 1794
BsmI GAATGC 1 cut(s) 2181
BsnI GGCC 7 cut(s) 47, 245, 275, 822, 1972, 2191, 2201
BsoBI CYCGRG 1 cut(s) 1922
Bsp13I TCCGGA 2 cut(s) 169, 2150
Bsp19I CCATGG 1 cut(s) 397
Bsp68I TCGCGA 1 cut(s) 568
BspACI CCGC 7 cut(s) 92, 108, 111, 1022, 1306, 1909, 2175
BspANI GGCC 7 cut(s) 47, 245, 275, 822, 1972, 2191, 2201
BspCNI CTCAG 4 cut(s) 869, 901, 1776, 1876
BspEI TCCGGA 2 cut(s) 169, 2150
BspFNI CGCG 2 cut(s) 92, 568
BspLI GGNNCC 3 cut(s) 479, 906, 2208
BspPI GGATC 6 cut(s) 323, 472, 485, 899, 912, 1365
BspT107I GGYRCC 1 cut(s) 2206
BsrBI CCGCTC 1 cut(s) 2175
BsrDI GCAATG 1 cut(s) 1956
BsrFI RCCGGY 1 cut(s) 127
BsrI ACTGG 9 cut(s) 246, 246, 332, 539, 1269, 1383, 1627, 1795, 1801
BssAI RCCGGY 1 cut(s) 127
BssECI CCNNGG 6 cut(s) 397, 1605, 1886, 2031, 2192, 2202
BssNAI GTATAC 1 cut(s) 611
BssT1I CCWWGG 2 cut(s) 397, 2192
Bst1107I GTATAC 1 cut(s) 611
Bst2UI CCWGG 3 cut(s) 1606, 1887, 2204
Bst4CI ACNGT 5 cut(s) 890, 1510, 1642, 1758, 1903
Bst6I CTCTTC 1 cut(s) 918
BstAPI GCANNNNNTGC 1 cut(s) 1955
BstBAI YACGTR 1 cut(s) 2232
BstC8I GCNNGC 3 cut(s) 820, 1519, 1911
BstDEI CTNAG 6 cut(s) 856, 909, 1262, 1784, 1863, 2092
BstDSI CCRYGG 1 cut(s) 397
BstF5I GGATG 8 cut(s) 373, 418, 504, 932, 1078, 1189, 1837, 2202
BstFNI CGCG 2 cut(s) 92, 568
BstMAI GTCTC 5 cut(s) 53, 525, 683, 908, 953
BstMWI GCNNNNNNNGC 5 cut(s) 251, 1499, 1582, 1888, 1955
BstNI CCWGG 3 cut(s) 1606, 1887, 2204
BstNSI RCATGY 1 cut(s) 948
BstSCI CCNGG 4 cut(s) 1604, 1885, 2031, 2202
BstSNI TACGTA 1 cut(s) 2232
BstUI CGCG 2 cut(s) 92, 568
BstV1I GCAGC 5 cut(s) 16, 985, 1197, 1315, 1486
BstV2I GAAGAC 1 cut(s) 1224
BstX2I RGATCY 3 cut(s) 477, 904, 1370
BstYI RGATCY 3 cut(s) 477, 904, 1370
BstZ17I GTATAC 1 cut(s) 611
Bsu36I CCTNAGG 1 cut(s) 909
BsuRI GGCC 7 cut(s) 47, 245, 275, 822, 1972, 2191, 2201
BtgI CCRYGG 1 cut(s) 397
BtsCI GGATG 8 cut(s) 373, 418, 504, 932, 1078, 1189, 1837, 2202
BtsI GCAGTG 2 cut(s) 1130, 1920
BtsIMutI CAGTG 6 cut(s) 253, 339, 1130, 1276, 1620, 1920
BtuMI TCGCGA 1 cut(s) 568
Cac8I GCNNGC 3 cut(s) 820, 1519, 1911
CaiI CAGNNNCTG 2 cut(s) 534, 1901
Cfr10I RCCGGY 1 cut(s) 127
Cfr13I GGNCC 5 cut(s) 97, 1223, 1970, 2159, 2200
CseI GACGC 1 cut(s) 1334
Csp6I GTAC 8 cut(s) 503, 891, 1051, 1656, 1788, 1899, 2044, 2233
CspAI ACCGGT 1 cut(s) 127
CspCI CAANNNNNGTGG 4 cut(s) 295, 330, 1695, 1730
CviAII CATG 6 cut(s) 398, 614, 945, 1375, 1513, 2065
CviQI GTAC 8 cut(s) 503, 891, 1051, 1656, 1788, 1899, 2044, 2233
DdeI CTNAG 6 cut(s) 856, 909, 1262, 1784, 1863, 2092
DraIII CACNNNGTG 1 cut(s) 1967
EaeI YGGCCR 1 cut(s) 243
Eam1104I CTCTTC 1 cut(s) 918
EarI CTCTTC 1 cut(s) 918
Eco105I TACGTA 1 cut(s) 2232
Eco130I CCWWGG 2 cut(s) 397, 2192
Eco147I AGGCCT 2 cut(s) 275, 2191
Eco47I GGWCC 3 cut(s) 97, 1223, 2159
Eco57I CTGAAG 4 cut(s) 530, 942, 1151, 1798
Eco81I CCTNAGG 1 cut(s) 909
Eco88I CYCGRG 1 cut(s) 1922
EcoRII CCWGG 3 cut(s) 1604, 1885, 2202
EcoT14I CCWWGG 2 cut(s) 397, 2192
ErhI CCWWGG 2 cut(s) 397, 2192
Esp3I CGTCTC 1 cut(s) 53
FaeI CATG 6 cut(s) 401, 617, 948, 1378, 1516, 2068
FalI AAGNNNNNCTT 4 cut(s) 263, 295, 780, 812
FaqI GGGAC 2 cut(s) 777, 1794
FatI CATG 6 cut(s) 397, 613, 944, 1374, 1512, 2064
FauI CCCGC 1 cut(s) 1902
FauNDI CATATG 2 cut(s) 993, 1564
FbaI TGATCA 1 cut(s) 1696
FblI GTMKAC 1 cut(s) 610
Fnu4HI GCNGC 8 cut(s) 5, 109, 112, 999, 1022, 1211, 1304, 1500
FokI GGATG 8 cut(s) 380, 425, 511, 919, 1065, 1196, 1844, 2209
Fsp4HI GCNGC 8 cut(s) 5, 109, 112, 999, 1022, 1211, 1304, 1500
FspBI CTAG 5 cut(s) 884, 987, 1577, 1946, 2163
GluI GCNGC 8 cut(s) 5, 109, 112, 999, 1022, 1211, 1304, 1500
GsaI CCCAGC 1 cut(s) 1655
GsuI CTGGAG 3 cut(s) 1434, 1644, 1818
HaeIII GGCC 7 cut(s) 47, 245, 275, 822, 1972, 2191, 2201
HapII CCGG 7 cut(s) 100, 128, 148, 170, 1214, 2033, 2151
HgaI GACGC 1 cut(s) 1334
Hin1II CATG 6 cut(s) 401, 617, 948, 1378, 1516, 2068
HincII GTYRAC 2 cut(s) 1074, 1380
HindII GTYRAC 2 cut(s) 1074, 1380
HindIII AAGCTT 1 cut(s) 1491
HpaII CCGG 7 cut(s) 100, 128, 148, 170, 1214, 2033, 2151
HphI GGTGA 5 cut(s) 66, 386, 1541, 1691, 2020
Hpy166II GTNNAC 5 cut(s) 97, 611, 709, 1074, 1380
Hpy8I GTNNAC 5 cut(s) 97, 611, 709, 1074, 1380
Hpy99I CGWCG 2 cut(s) 86, 1510
HpyAV CCTTC 5 cut(s) 87, 286, 1165, 1352, 1822
HpyCH4III ACNGT 5 cut(s) 890, 1510, 1642, 1758, 1903
HpyCH4IV ACGT 3 cut(s) 559, 1422, 2231
HpyF10VI GCNNNNNNNGC 5 cut(s) 251, 1499, 1582, 1888, 1955
HpyF3I CTNAG 6 cut(s) 856, 909, 1262, 1784, 1863, 2092
HpySE526I ACGT 3 cut(s) 559, 1422, 2231
Hsp92II CATG 6 cut(s) 401, 617, 948, 1378, 1516, 2068
Kpn2I TCCGGA 2 cut(s) 169, 2150
Ksp22I TGATCA 1 cut(s) 1696
LmnI GCTCC 5 cut(s) 157, 983, 1724, 1799, 2172
Lsp1109I GCAGC 5 cut(s) 16, 985, 1197, 1315, 1486
LweI GCATC 2 cut(s) 941, 1138
MaeI CTAG 5 cut(s) 884, 987, 1577, 1946, 2163
MaeII ACGT 3 cut(s) 559, 1422, 2231
MaeIII GTNAC 5 cut(s) 848, 879, 1198, 1401, 2074
MbiI CCGCTC 1 cut(s) 2175
MboII GAAGA 9 cut(s) 390, 608, 800, 935, 1157, 1229, 1863, 1925, 2030
MfeI CAATTG 1 cut(s) 657
MflI RGATCY 3 cut(s) 477, 904, 1370
MlsI TGGCCA 1 cut(s) 245
MluNI TGGCCA 1 cut(s) 245
MlyI GAGTC 2 cut(s) 1441, 1619
MmeI TCCRAC 3 cut(s) 105, 390, 960
Mox20I TGGCCA 1 cut(s) 245
MroI TCCGGA 2 cut(s) 169, 2150
MroXI GAANNNNTTC 1 cut(s) 2022
MscI TGGCCA 1 cut(s) 245
MseI TTAA 5 cut(s) 635, 671, 1238, 1479, 1731
MslI CAYNNNNRTG 2 cut(s) 756, 1291
Msp20I TGGCCA 1 cut(s) 245
MspA1I CMGCKG 1 cut(s) 1306
MspI CCGG 7 cut(s) 100, 128, 148, 170, 1214, 2033, 2151
MspR9I CCNGG 4 cut(s) 1606, 1887, 2033, 2204
MunI CAATTG 1 cut(s) 657
Mva1269I GAATGC 1 cut(s) 2181
MvaI CCWGG 3 cut(s) 1606, 1887, 2204
MvnI CGCG 2 cut(s) 92, 568
MwoI GCNNNNNNNGC 5 cut(s) 251, 1499, 1582, 1888, 1955
NciI CCSGG 1 cut(s) 2033
NcoI CCATGG 1 cut(s) 397
NdeI CATATG 2 cut(s) 993, 1564
NlaIII CATG 6 cut(s) 401, 617, 948, 1378, 1516, 2068
NlaIV GGNNCC 3 cut(s) 479, 906, 2208
NmeAIII GCCGAG 1 cut(s) 73
NmuCI GTSAC 1 cut(s) 879
NruI TCGCGA 1 cut(s) 568
NspI RCATGY 1 cut(s) 948
PceI AGGCCT 2 cut(s) 275, 2191
PciI ACATGT 1 cut(s) 944
PcsI WCGNNNNNNNCGW 2 cut(s) 427, 565
PctI GAATGC 1 cut(s) 2181
PdmI GAANNNNTTC 1 cut(s) 2022
PinAI ACCGGT 1 cut(s) 127
PkrI GCNGC 8 cut(s) 6, 110, 113, 1000, 1023, 1212, 1305, 1501
PleI GAGTC 2 cut(s) 1441, 1618
PpsI GAGTC 2 cut(s) 1441, 1618
Ppu21I YACGTR 1 cut(s) 2232
PscI ACATGT 1 cut(s) 944
Psp1406I AACGTT 1 cut(s) 1422
Psp6I CCWGG 3 cut(s) 1604, 1885, 2202
PspFI CCCAGC 1 cut(s) 1651
PspGI CCWGG 3 cut(s) 1604, 1885, 2202
PspN4I GGNNCC 3 cut(s) 479, 906, 2208
PspPI GGNCC 5 cut(s) 97, 1223, 1970, 2159, 2200
PstNI CAGNNNCTG 2 cut(s) 534, 1901
PsuI RGATCY 3 cut(s) 477, 904, 1370
RruI TCGCGA 1 cut(s) 568
RsaI GTAC 8 cut(s) 504, 892, 1052, 1657, 1789, 1900, 2045, 2234
RsaNI GTAC 8 cut(s) 503, 891, 1051, 1656, 1788, 1899, 2044, 2233
RseI CAYNNNNRTG 2 cut(s) 756, 1291
SaqAI TTAA 5 cut(s) 635, 671, 1238, 1479, 1731
SatI GCNGC 8 cut(s) 5, 109, 112, 999, 1022, 1211, 1304, 1500
Sau96I GGNCC 5 cut(s) 97, 1223, 1970, 2159, 2200
ScaI AGTACT 2 cut(s) 1052, 1789
SchI GAGTC 2 cut(s) 1441, 1619
ScrFI CCNGG 4 cut(s) 1606, 1887, 2033, 2204
SfaNI GCATC 2 cut(s) 941, 1138
SinI GGWCC 3 cut(s) 97, 1223, 2159
SmiMI CAYNNNNRTG 2 cut(s) 756, 1291
SmlI CTYRAG 4 cut(s) 779, 966, 1004, 1064
SmoI CTYRAG 4 cut(s) 779, 966, 1004, 1064
SnaBI TACGTA 1 cut(s) 2232
SseBI AGGCCT 2 cut(s) 275, 2191
SsiI CCGC 7 cut(s) 92, 108, 111, 1022, 1306, 1909, 2175
SspMI CTAG 5 cut(s) 884, 987, 1577, 1946, 2163
StuI AGGCCT 2 cut(s) 275, 2191
StyD4I CCNGG 4 cut(s) 1604, 1885, 2031, 2202
StyI CCWWGG 2 cut(s) 397, 2192
TaaI ACNGT 5 cut(s) 890, 1510, 1642, 1758, 1903
TaiI ACGT 3 cut(s) 562, 1425, 2234
TaqI TCGA 3 cut(s) 356, 517, 873
TatI WGTACW 4 cut(s) 890, 1050, 1787, 2043
TauI GCSGC 3 cut(s) 111, 114, 1024
Tru1I TTAA 5 cut(s) 635, 671, 1238, 1479, 1731
Tru9I TTAA 5 cut(s) 635, 671, 1238, 1479, 1731
TscAI CASTG 6 cut(s) 253, 339, 1137, 1276, 1627, 1920
TseFI GTSAC 1 cut(s) 879
TseI GCWGC 5 cut(s) 4, 998, 1210, 1303, 1499
Tsp45I GTSAC 1 cut(s) 879
TspDTI ATGAA 8 cut(s) 68, 629, 1503, 1551, 1680, 1848, 1869, 2134
TspGWI ACGGA 4 cut(s) 77, 419, 568, 1236
TspRI CASTG 6 cut(s) 253, 339, 1137, 1276, 1627, 1920
VpaK11BI GGWCC 3 cut(s) 97, 1223, 2159
XapI RAATTY 4 cut(s) 830, 842, 1858, 2101
XceI RCATGY 1 cut(s) 948
XmiI GTMKAC 1 cut(s) 610
XmnI GAANNNNTTC 1 cut(s) 2022
XspI CTAG 5 cut(s) 884, 987, 1577, 1946, 2163
ZrmI AGTACT 2 cut(s) 1052, 1789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.