Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G65440 AT1G65440 AT1G65440 AT1G65440 |
| fragaria_vesca | FvH4_1g02480 FvH4_1g29220 |
| malus_domestica | MD00G1108000.v1.1 MD10G1173400.v1.1 |
| prunus_persica | Prupe.7G019900_v2.0.a1 Prupe.7G019900_v2.0.a1 Prupe.7G019900_v2.0.a1 |
| pyrus_communis | pycom12g09080 |
| rosa_chinensis | RchiOBHm_Chr3g0494601 |
| rosa_laevigata | RLG00000022666 |
| rosa_multiflora | Rmu_sc0002762.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00391060 |
| rosa_rugosa | Rorug03G0266000 |
| rosa_samantha | Rh3AG316000 Rh3BG351500 Rh3CG348100 Rh3DG350700 |
| rosa_wichuraiana | Rw3G027590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 575 |
| Acc16I | TGCGCA | 1 cut(s) | 3066 |
| Acc36I | ACCTGC | 3 cut(s) | 850, 2200, 2590 |
| Acc65I | GGTACC | 1 cut(s) | 3537 |
| AccB1I | GGYRCC | 3 cut(s) | 649, 3537, 4321 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 750, 896, 2500, 4526 |
| AccI | GTMKAC | 3 cut(s) | 174, 864, 3637 |
| AclWI | GGATC | 9 cut(s) | 1094, 3156, 3764, 3777, 3891, 3977, 3978, 4393, 4437 |
| AcoI | YGGCCR | 2 cut(s) | 2491, 3075 |
| AcuI | CTGAAG | 6 cut(s) | 1202, 1877, 2384, 3366, 4338, 4800 |
| AcyI | GRCGYC | 1 cut(s) | 1607 |
| AdeI | CACNNNGTG | 1 cut(s) | 2663 |
| AflII | CTTAAG | 1 cut(s) | 626 |
| AflIII | ACRYGT | 4 cut(s) | 1619, 2356, 2974, 3139 |
| AjiI | CACGTC | 1 cut(s) | 3142 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 778, 810 |
| AleI | CACNNNNGTG | 2 cut(s) | 1990, 2246 |
| Alw21I | GWGCWC | 5 cut(s) | 45, 294, 1237, 1653, 3406 |
| Alw26I | GTCTC | 9 cut(s) | 22, 590, 607, 1583, 1628, 2140, 2143, 4805, 4905 |
| AlwI | GGATC | 9 cut(s) | 1094, 3156, 3764, 3777, 3891, 3977, 3978, 4393, 4437 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 1042, 1473, 4313, 4377, 4752 |
| Ama87I | CYCGRG | 1 cut(s) | 767 |
| ApaI | GGGCCC | 1 cut(s) | 2225 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 32 |
| AseI | ATTAAT | 2 cut(s) | 2790, 3248 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 66, 2358, 3689, 4202 |
| Asp718I | GGTACC | 1 cut(s) | 3537 |
| AspA2I | CCTAGG | 2 cut(s) | 2198, 2401 |
| AspLEI | GCGC | 3 cut(s) | 459, 3067, 4263 |
| AsuC2I | CCSGG | 1 cut(s) | 3146 |
| AsuHPI | GGTGA | 9 cut(s) | 398, 560, 710, 1424, 2710, 2932, 3335, 4674, 4865 |
| AsuNHI | GCTAGC | 1 cut(s) | 2999 |
| AvaI | CYCGRG | 1 cut(s) | 767 |
| AvaII | GGWCC | 5 cut(s) | 2295, 2666, 2849, 4292, 4672 |
| AvrII | CCTAGG | 2 cut(s) | 2198, 2401 |
| BaeGI | GKGCMC | 1 cut(s) | 2225 |
| BalI | TGGCCA | 2 cut(s) | 2493, 3077 |
| BamHI | GGATCC | 1 cut(s) | 3769 |
| BanI | GGYRCC | 3 cut(s) | 649, 3537, 4321 |
| BanII | GRGCYC | 3 cut(s) | 45, 294, 2225 |
| BbsI | GAAGAC | 5 cut(s) | 186, 1923, 3630, 3926, 4236 |
| Bbv12I | GWGCWC | 5 cut(s) | 45, 294, 1237, 1653, 3406 |
| BbvCI | CCTCAGC | 2 cut(s) | 1875, 4278 |
| BceAI | ACGGC | 3 cut(s) | 65, 88, 245 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2174, 2208 |
| BciVI | GTATCC | 3 cut(s) | 1726, 3328, 4095 |
| BclI | TGATCA | 5 cut(s) | 934, 2347, 2377, 2572, 4468 |
| BcnI | CCSGG | 1 cut(s) | 3146 |
| BcoDI | GTCTC | 9 cut(s) | 22, 590, 607, 1583, 1628, 2140, 2143, 4805, 4905 |
| BfmI | CTRYAG | 9 cut(s) | 438, 716, 1350, 1474, 3132, 3366, 3638, 3735, 4338 |
| BfoI | RGCGCY | 1 cut(s) | 4264 |
| BfrI | CTTAAG | 1 cut(s) | 626 |
| BfuAI | ACCTGC | 3 cut(s) | 850, 2200, 2590 |
| BfuI | GTATCC | 3 cut(s) | 1726, 3328, 4095 |
| BglII | AGATCT | 1 cut(s) | 2888 |
| BlnI | CCTAGG | 2 cut(s) | 2198, 2401 |
| BmcAI | AGTACT | 1 cut(s) | 1955 |
| Bme18I | GGWCC | 5 cut(s) | 2295, 2666, 2849, 4292, 4672 |
| BmeT110I | CYCGRG | 1 cut(s) | 767 |
| BmgBI | CACGTC | 1 cut(s) | 3142 |
| BmrI | ACTGGG | 3 cut(s) | 609, 3789, 4891 |
| BmtI | GCTAGC | 1 cut(s) | 3003 |
| BmuI | ACTGGG | 3 cut(s) | 609, 3789, 4891 |
| BpiI | GAAGAC | 5 cut(s) | 186, 1923, 3630, 3926, 4236 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1444, 1476 |
| BpmI | CTGGAG | 2 cut(s) | 1440, 4756 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1875, 4278 |
| BpuEI | CTTGAG | 6 cut(s) | 317, 473, 1328, 1626, 3227, 3815 |
| BpuMI | CCSGG | 1 cut(s) | 3146 |
| Bsa29I | ATCGAT | 1 cut(s) | 2072 |
| BsaAI | YACGTR | 1 cut(s) | 2975 |
| BsaBI | GATNNNNATC | 4 cut(s) | 1128, 3768, 4428, 4497 |
| BsaHI | GRCGYC | 1 cut(s) | 1607 |
| BsaI | GGTCTC | 1 cut(s) | 2140 |
| BsaWI | WCCGGW | 3 cut(s) | 1594, 2963, 4850 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 705, 735, 1592, 1622, 4723, 4753 |
| Bse3DI | GCAATG | 4 cut(s) | 1632, 2652, 3753, 4585 |
| Bse8I | GATNNNNATC | 4 cut(s) | 1128, 3768, 4428, 4497 |
| BseCI | ATCGAT | 1 cut(s) | 2072 |
| BseJI | GATNNNNATC | 4 cut(s) | 1128, 3768, 4428, 4497 |
| BseMI | GCAATG | 4 cut(s) | 1632, 2652, 3753, 4585 |
| BseMII | CTCAG | 8 cut(s) | 374, 1515, 1866, 2154, 2193, 3611, 4292, 4916 |
| BseSI | GKGCMC | 1 cut(s) | 2225 |
| BseYI | CCCAGC | 5 cut(s) | 332, 2217, 4343, 4377, 4752 |
| BsgI | GTGCAG | 5 cut(s) | 878, 1055, 1968, 2178, 2568 |
| BshNI | GGYRCC | 3 cut(s) | 649, 3537, 4321 |
| BshVI | ATCGAT | 1 cut(s) | 2072 |
| BsiHKAI | GWGCWC | 5 cut(s) | 45, 294, 1237, 1653, 3406 |
| BsiHKCI | CYCGRG | 1 cut(s) | 767 |
| BsiSI | CCGG | 5 cut(s) | 1595, 1767, 2964, 3145, 4851 |
| BslFI | GGGAC | 4 cut(s) | 616, 1446, 2281, 3777 |
| BsmAI | GTCTC | 9 cut(s) | 22, 590, 607, 1583, 1628, 2140, 2143, 4805, 4905 |
| BsmFI | GGGAC | 4 cut(s) | 616, 1446, 2281, 3777 |
| Bso31I | GGTCTC | 1 cut(s) | 2140 |
| BsoBI | CYCGRG | 1 cut(s) | 767 |
| Bsp120I | GGGCCC | 1 cut(s) | 2221 |
| Bsp1286I | GDGCHC | 6 cut(s) | 45, 294, 1237, 1653, 2225, 3406 |
| Bsp1407I | TGTACA | 1 cut(s) | 3358 |
| BspCNI | CTCAG | 8 cut(s) | 373, 1516, 1867, 2153, 2192, 3610, 4291, 4915 |
| BspDI | ATCGAT | 1 cut(s) | 2072 |
| BspHI | TCATGA | 3 cut(s) | 472, 1332, 2370 |
| BspMAI | CTGCAG | 5 cut(s) | 442, 1354, 1478, 3739, 4342 |
| BspMI | ACCTGC | 3 cut(s) | 850, 2200, 2590 |
| BspOI | GCTAGC | 1 cut(s) | 3003 |
| BspPI | GGATC | 9 cut(s) | 1094, 3156, 3764, 3777, 3891, 3977, 3978, 4393, 4437 |
| BspT107I | GGYRCC | 3 cut(s) | 649, 3537, 4321 |
| BspTI | CTTAAG | 1 cut(s) | 626 |
| BspTNI | GGTCTC | 1 cut(s) | 2140 |
| BsrDI | GCAATG | 4 cut(s) | 1632, 2652, 3753, 4585 |
| BsrGI | TGTACA | 1 cut(s) | 3358 |
| BssNAI | GTATAC | 1 cut(s) | 865 |
| BssNI | GRCGYC | 1 cut(s) | 1607 |
| BssT1I | CCWWGG | 4 cut(s) | 2198, 2401, 3698, 4629 |
| Bst1107I | GTATAC | 1 cut(s) | 865 |
| Bst4CI | ACNGT | 7 cut(s) | 218, 1469, 1738, 1992, 2507, 3370, 3584 |
| Bst6I | CTCTTC | 6 cut(s) | 72, 198, 501, 546, 579, 2668 |
| BstACI | GRCGYC | 1 cut(s) | 1607 |
| BstAFI | CTTAAG | 1 cut(s) | 626 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 1033, 1784, 2651, 3401 |
| BstAUI | TGTACA | 1 cut(s) | 3358 |
| BstBAI | YACGTR | 1 cut(s) | 2975 |
| BstDSI | CCRYGG | 1 cut(s) | 3802 |
| BstH2I | RGCGCY | 1 cut(s) | 4264 |
| BstHHI | GCGC | 3 cut(s) | 459, 3067, 4263 |
| BstMAI | GTCTC | 9 cut(s) | 22, 590, 607, 1583, 1628, 2140, 2143, 4805, 4905 |
| BstNSI | RCATGY | 2 cut(s) | 1623, 3430 |
| BstSFI | CTRYAG | 9 cut(s) | 438, 716, 1350, 1474, 3132, 3366, 3638, 3735, 4338 |
| BstSLI | GKGCMC | 1 cut(s) | 2225 |
| BstV2I | GAAGAC | 5 cut(s) | 186, 1923, 3630, 3926, 4236 |
| BstX2I | RGATCY | 3 cut(s) | 1099, 2888, 3769 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 98 |
| BstYI | RGATCY | 3 cut(s) | 1099, 2888, 3769 |
| BstZ17I | GTATAC | 1 cut(s) | 865 |
| Bsu15I | ATCGAT | 1 cut(s) | 2072 |
| BsuI | GTATCC | 3 cut(s) | 1726, 3328, 4095 |
| BsuTUI | ATCGAT | 1 cut(s) | 2072 |
| BtgI | CCRYGG | 1 cut(s) | 3802 |
| BtgZI | GCGATG | 1 cut(s) | 90 |
| BtrI | CACGTC | 1 cut(s) | 3142 |
| BtsI | GCAGTG | 1 cut(s) | 4378 |
| BtsIMutI | CAGTG | 9 cut(s) | 223, 751, 876, 890, 1474, 2148, 4378, 4572, 4780 |
| BveI | ACCTGC | 3 cut(s) | 850, 2200, 2590 |
| CaiI | CAGNNNCTG | 5 cut(s) | 1042, 1473, 4313, 4377, 4752 |
| CciI | TCATGA | 3 cut(s) | 472, 1332, 2370 |
| CfoI | GCGC | 3 cut(s) | 459, 3067, 4263 |
| ClaI | ATCGAT | 1 cut(s) | 2072 |
| CseI | GACGC | 2 cut(s) | 335, 1596 |
| CsiI | ACCWGGT | 1 cut(s) | 2772 |
| DraIII | CACNNNGTG | 1 cut(s) | 2663 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 575 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 575 |
| EaeI | YGGCCR | 2 cut(s) | 2491, 3075 |
| Eam1104I | CTCTTC | 6 cut(s) | 72, 198, 501, 546, 579, 2668 |
| EarI | CTCTTC | 6 cut(s) | 72, 198, 501, 546, 579, 2668 |
| EciI | GGCGGA | 1 cut(s) | 2998 |
| Ecl136II | GAGCTC | 2 cut(s) | 43, 292 |
| Eco130I | CCWWGG | 4 cut(s) | 2198, 2401, 3698, 4629 |
| Eco147I | AGGCCT | 1 cut(s) | 2781 |
| Eco24I | GRGCYC | 3 cut(s) | 45, 294, 2225 |
| Eco31I | GGTCTC | 1 cut(s) | 2140 |
| Eco32I | GATATC | 3 cut(s) | 499, 1006, 4116 |
| Eco47I | GGWCC | 5 cut(s) | 2295, 2666, 2849, 4292, 4672 |
| Eco53kI | GAGCTC | 2 cut(s) | 43, 292 |
| Eco57I | CTGAAG | 6 cut(s) | 1202, 1877, 2384, 3366, 4338, 4800 |
| Eco88I | CYCGRG | 1 cut(s) | 767 |
| EcoICRI | GAGCTC | 2 cut(s) | 43, 292 |
| EcoO109I | RGGNCCY | 3 cut(s) | 2221, 2222, 2295 |
| EcoRI | GAATTC | 3 cut(s) | 985, 3039, 3305 |
| EcoRV | GATATC | 3 cut(s) | 499, 1006, 4116 |
| EcoT14I | CCWWGG | 4 cut(s) | 2198, 2401, 3698, 4629 |
| EcoT22I | ATGCAT | 2 cut(s) | 2962, 4789 |
| EcoT38I | GRGCYC | 3 cut(s) | 45, 294, 2225 |
| ErhI | CCWWGG | 4 cut(s) | 2198, 2401, 3698, 4629 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 962, 994, 1379, 1411, 4681, 4713 |
| FaqI | GGGAC | 4 cut(s) | 616, 1446, 2281, 3777 |
| FauI | CCCGC | 2 cut(s) | 1771, 2549 |
| FauNDI | CATATG | 2 cut(s) | 1668, 4522 |
| FbaI | TGATCA | 5 cut(s) | 934, 2347, 2377, 2572, 4468 |
| FblI | GTMKAC | 3 cut(s) | 174, 864, 3637 |
| FriOI | GRGCYC | 3 cut(s) | 45, 294, 2225 |
| FspI | TGCGCA | 1 cut(s) | 3066 |
| GlaI | GCGC | 3 cut(s) | 458, 3066, 4262 |
| GsaI | CCCAGC | 5 cut(s) | 336, 2221, 4347, 4381, 4756 |
| GsuI | CTGGAG | 2 cut(s) | 1440, 4756 |
| HaeII | RGCGCY | 1 cut(s) | 4264 |
| HapII | CCGG | 5 cut(s) | 1595, 1767, 2964, 3145, 4851 |
| HgaI | GACGC | 2 cut(s) | 335, 1596 |
| HhaI | GCGC | 3 cut(s) | 459, 3067, 4263 |
| Hin1I | GRCGYC | 1 cut(s) | 1607 |
| Hin6I | GCGC | 3 cut(s) | 457, 3065, 4261 |
| HinP1I | GCGC | 3 cut(s) | 457, 3065, 4261 |
| HincII | GTYRAC | 4 cut(s) | 1381, 2079, 2323, 2413 |
| HindII | GTYRAC | 4 cut(s) | 1381, 2079, 2323, 2413 |
| HindIII | AAGCTT | 5 cut(s) | 623, 1886, 3183, 3203, 4695 |
| HpaI | GTTAAC | 2 cut(s) | 2323, 2413 |
| HpaII | CCGG | 5 cut(s) | 1595, 1767, 2964, 3145, 4851 |
| HphI | GGTGA | 9 cut(s) | 398, 560, 710, 1424, 2710, 2932, 3335, 4674, 4865 |
| Hpy99I | CGWCG | 5 cut(s) | 50, 86, 107, 1281, 1612 |
| HpyCH4III | ACNGT | 7 cut(s) | 218, 1469, 1738, 1992, 2507, 3370, 3584 |
| HpyCH4IV | ACGT | 4 cut(s) | 1279, 2356, 2974, 3141 |
| HpySE526I | ACGT | 4 cut(s) | 1279, 2356, 2974, 3141 |
| Hsp92I | GRCGYC | 1 cut(s) | 1607 |
| HspAI | GCGC | 3 cut(s) | 457, 3065, 4261 |
| KflI | GGGWCCC | 1 cut(s) | 2295 |
| KpnI | GGTACC | 1 cut(s) | 3541 |
| Ksp22I | TGATCA | 5 cut(s) | 934, 2347, 2377, 2572, 4468 |
| KspAI | GTTAAC | 2 cut(s) | 2323, 2413 |
| LmnI | GCTCC | 9 cut(s) | 297, 379, 726, 835, 2405, 4547, 4612, 4763, 4775 |
| MabI | ACCWGGT | 1 cut(s) | 2772 |
| MaeII | ACGT | 4 cut(s) | 1279, 2356, 2974, 3141 |
| MaeIII | GTNAC | 5 cut(s) | 1514, 1897, 2100, 2764, 3101 |
| MflI | RGATCY | 3 cut(s) | 1099, 2888, 3769 |
| MhlI | GDGCHC | 6 cut(s) | 45, 294, 1237, 1653, 2225, 3406 |
| MlsI | TGGCCA | 2 cut(s) | 2493, 3077 |
| MluNI | TGGCCA | 2 cut(s) | 2493, 3077 |
| MlyI | GAGTC | 4 cut(s) | 598, 1334, 3820, 4295 |
| MmeI | TCCRAC | 3 cut(s) | 1554, 3006, 4385 |
| Mox20I | TGGCCA | 2 cut(s) | 2493, 3077 |
| Mph1103I | ATGCAT | 2 cut(s) | 2962, 4789 |
| MroXI | GAANNNNTTC | 4 cut(s) | 66, 2358, 3689, 4202 |
| MscI | TGGCCA | 2 cut(s) | 2493, 3077 |
| MslI | CAYNNNNRTG | 7 cut(s) | 75, 1990, 2246, 3431, 4179, 4269, 4476 |
| Msp20I | TGGCCA | 2 cut(s) | 2493, 3077 |
| MspA1I | CMGCKG | 2 cut(s) | 1676, 4343 |
| MspCI | CTTAAG | 1 cut(s) | 626 |
| MspI | CCGG | 5 cut(s) | 1595, 1767, 2964, 3145, 4851 |
| NciI | CCSGG | 1 cut(s) | 3146 |
| NdeI | CATATG | 2 cut(s) | 1668, 4522 |
| NheI | GCTAGC | 1 cut(s) | 2999 |
| NmuCI | GTSAC | 1 cut(s) | 2764 |
| NsbI | TGCGCA | 1 cut(s) | 3066 |
| NsiI | ATGCAT | 2 cut(s) | 2962, 4789 |
| NspI | RCATGY | 2 cut(s) | 1623, 3430 |
| OliI | CACNNNNGTG | 2 cut(s) | 1990, 2246 |
| PaeI | GCATGC | 1 cut(s) | 3430 |
| PaeR7I | CTCGAG | 1 cut(s) | 767 |
| PagI | TCATGA | 3 cut(s) | 472, 1332, 2370 |
| PasI | CCCWGGG | 1 cut(s) | 2225 |
| PceI | AGGCCT | 1 cut(s) | 2781 |
| PciI | ACATGT | 1 cut(s) | 1619 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 45, 51, 78, 4459 |
| PdmI | GAANNNNTTC | 4 cut(s) | 66, 2358, 3689, 4202 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 750, 896, 2500, 4526 |
| PfoI | TCCNGGA | 1 cut(s) | 3144 |
| PleI | GAGTC | 4 cut(s) | 598, 1333, 3820, 4294 |
| PpsI | GAGTC | 4 cut(s) | 598, 1333, 3820, 4294 |
| Ppu21I | YACGTR | 1 cut(s) | 2975 |
| PpuMI | RGGWCCY | 1 cut(s) | 2295 |
| PscI | ACATGT | 1 cut(s) | 1619 |
| PshBI | ATTAAT | 2 cut(s) | 2790, 3248 |
| Psp124BI | GAGCTC | 2 cut(s) | 45, 294 |
| Psp5II | RGGWCCY | 1 cut(s) | 2295 |
| PspFI | CCCAGC | 5 cut(s) | 332, 2217, 4343, 4377, 4752 |
| PspOMI | GGGCCC | 1 cut(s) | 2221 |
| PspPPI | RGGWCCY | 1 cut(s) | 2295 |
| PspXI | VCTCGAGB | 1 cut(s) | 767 |
| PstI | CTGCAG | 5 cut(s) | 442, 1354, 1478, 3739, 4342 |
| PstNI | CAGNNNCTG | 5 cut(s) | 1042, 1473, 4313, 4377, 4752 |
| PsuI | RGATCY | 3 cut(s) | 1099, 2888, 3769 |
| PvuII | CAGCTG | 2 cut(s) | 1676, 4343 |
| RseI | CAYNNNNRTG | 7 cut(s) | 75, 1990, 2246, 3431, 4179, 4269, 4476 |
| SacI | GAGCTC | 2 cut(s) | 45, 294 |
| ScaI | AGTACT | 1 cut(s) | 1955 |
| SchI | GAGTC | 4 cut(s) | 598, 1334, 3820, 4295 |
| SduI | GDGCHC | 6 cut(s) | 45, 294, 1237, 1653, 2225, 3406 |
| SexAI | ACCWGGT | 1 cut(s) | 2772 |
| SfcI | CTRYAG | 9 cut(s) | 438, 716, 1350, 1474, 3132, 3366, 3638, 3735, 4338 |
| Sfr274I | CTCGAG | 1 cut(s) | 767 |
| SinI | GGWCC | 5 cut(s) | 2295, 2666, 2849, 4292, 4672 |
| SlaI | CTCGAG | 1 cut(s) | 767 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 75, 1990, 2246, 3431, 4179, 4269, 4476 |
| SmlI | CTYRAG | 8 cut(s) | 296, 452, 626, 767, 1343, 1641, 3206, 3830 |
| SmoI | CTYRAG | 8 cut(s) | 296, 452, 626, 767, 1343, 1641, 3206, 3830 |
| SphI | GCATGC | 1 cut(s) | 3430 |
| SseBI | AGGCCT | 1 cut(s) | 2781 |
| SspI | AATATT | 2 cut(s) | 1186, 2901 |
| SstI | GAGCTC | 2 cut(s) | 45, 294 |
| StuI | AGGCCT | 1 cut(s) | 2781 |
| StyI | CCWWGG | 4 cut(s) | 2198, 2401, 3698, 4629 |
| TaaI | ACNGT | 7 cut(s) | 218, 1469, 1738, 1992, 2507, 3370, 3584 |
| TaiI | ACGT | 4 cut(s) | 1282, 2359, 2977, 3144 |
| TaqII | GACCGA | 2 cut(s) | 3642, 4422 |
| TatI | WGTACW | 4 cut(s) | 1953, 2281, 3358, 4160 |
| TauI | GCSGC | 3 cut(s) | 1778, 2864, 4509 |
| TscAI | CASTG | 9 cut(s) | 223, 751, 883, 897, 1474, 2148, 4378, 4579, 4780 |
| TseFI | GTSAC | 1 cut(s) | 2764 |
| Tsp45I | GTSAC | 1 cut(s) | 2764 |
| TspGWI | ACGGA | 4 cut(s) | 713, 2020, 4171, 4947 |
| TspRI | CASTG | 9 cut(s) | 223, 751, 883, 897, 1474, 2148, 4378, 4579, 4780 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 750, 896, 2500, 4526 |
| Vha464I | CTTAAG | 1 cut(s) | 626 |
| VpaK11BI | GGWCC | 5 cut(s) | 2295, 2666, 2849, 4292, 4672 |
| VspI | ATTAAT | 2 cut(s) | 2790, 3248 |
| XbaI | TCTAGA | 1 cut(s) | 1549 |
| XceI | RCATGY | 2 cut(s) | 1623, 3430 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 4181, 4421, 4682, 4904 |
| XhoI | CTCGAG | 1 cut(s) | 767 |
| XmaJI | CCTAGG | 2 cut(s) | 2198, 2401 |
| XmiI | GTMKAC | 3 cut(s) | 174, 864, 3637 |
| XmnI | GAANNNNTTC | 4 cut(s) | 66, 2358, 3689, 4202 |
| ZrmI | AGTACT | 1 cut(s) | 1955 |
| Zsp2I | ATGCAT | 2 cut(s) | 2962, 4789 |