Rh3BG351500

Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0009494
Physical Location & Seq
Forward (+)
41069616 .. 41078462
8847 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG351500.1

Sequence Viewer

Length: 4905 bp
ATGGGCAAAGCTGTCATCTCCGACGACGAGGATGAGGTCGAGCTCGACGAGGAGGATAGGGAACCCCTCGACGGGGACACAGTCGACCAGGACGGCGGCGGCGACGAAGATGAGGACGAAGAAGACGAAGGGCCAGATGAATATGAGAAGGATGATTTTATCGTAGATGATGTTGATGAAGAAGATGAGCAGGAGGAAGAAGAGCGGGCCGACAGTGATGAGGAGAGGCAGAAGAAGAAGAAAAGAAAGAAAAAAGAGGAGTATGTTCTTGATGAAGATGACTATGAGCTCCTGGAGGACAATAATGTGATTGCCCCGCGCAGAAAGGGGAAATTTAAGCGGCTGAAAAAAGCTCAGAGGCATGCTCAGGGGGACCTTGGTGGATTATCTGATGAGGAGGAGTTTCTTGGTACTGGTAAAGGGGGAAGAACTGCAGAGGAGAAGCTTAAGTTCTCATTATTTGGTGGTGATGATGAAGGCCCTCCACTTGAGGACATTGCTGAAGAGGAGGAACCAGCAGAAGCGGAAGATGACGGAGAAGATGAAATGGCAGACTTTATAGTCGACGAAGAATTTGATGAGGCTGGTGTTCCTGTCAGACAGAAGAAGCTTAAGAAAAAGAAATCCAGGCAGGCACCAGGAGTATCTTCATCTGCTCTGCAGGAAGCCCATGACATATTCGGTGATGTTGATGAATTACTGCAGCTGCGTAAGCAAGGTTTGGATTCTAGTGAATGGAAGGAAAGGAGGCTTGAAGATGAATTTGAACCAATTGTTCTTTCGGAAAAGTATATGACAGAGAAGGATGACCAGATTCGGGAGATTGATGTCCCAGAAAGAATTCAGGTATATGAGGAAAGCACTGGTTTTCCTCCACTTGATGAAAAGAGCATAGATGATGAGAGTACCTGGATATTCAATCAACTTGCAAGTGGTACAGTTCCTTTTTTTGGCAAGACAGGCCTGGGGAATTCCATAAGCAGGGACGACATCATTGGATTCTTGAACTTGCACCATGTGCAGAAATTGGATGTTCCTTTTATTGCGATGTATCGGAAAGAGGAGTGCCTTAGTATATTGAAAGATCCTGAACACATGGACATGGATGATCAAAATGAGAAAGCATCCACACTAAAGTGGCACAAGGTACTTTGGTCCATTCAGGACTTGCATAGAAAATGGTTGCTGCTTCAGAAGAGGAAAAGTGCTCTGCAATCTTATTATGAAAAGCGGTTTGATGAAGAATCTCGACGCATATACGATGAGACCAGACTAACTTTAAATCAGCAACTTTTTGAATCAATTATGAAGTCACTAAAGGCTGCAGAATCAGAGAGAGAAGTTGATGATGTGGACACCAAGTTTAACTTGCATTTCCCTGCTGGTGAGATAGGTGTGGATGAGGGCCAATATAAGAGGCCTAAGAGGAAGTCCCTTTATAGTATCTGCAGTAAGGCTGGCTTGTGGGAGGTTGCCAGCAAGTTTGGTTACACCTCTGAACAGTTTGGTTTGCAATTGTCACTAGAGAAAATGAGAATGGATGAGCTGGAGGATGCGAAAGAGACGCCAGAGGAATTGGCTTCAAACTTCACATGTGCAATGTTTGAGACACCTCAGGAAGTGCTCAAAGGAGCCAGGCATATGGCTGCTGTTGAGATAAGCTGTGAGCCATGTGTCAGGAAGTATGTTAGGAGCAACTACTTGGATATGGTTGAGTTGTCCACCAGCCCAACACCAGACGGAAATACTGCAATTGAAGCTTTTCATCAGTTTGCAGGGGTGAAGTGGTTGCAAAGAAAGCCATTAAATAGATTTGGGGATGCACAATGGCTGCTTATCCAGAAGGCTGAAGAGGAGAAGCTTCTTCAAGTTACTATTAAGCTACCGGAAGACAGACTAAACAAGTTGATGAGCGACTTTAATGAGTACTATCTTAGTGATGGTGTTAGTAAATCTGCACAACTGTGGAATGAGCAGCGGAAGTTGATATTGCAGGATGCTCTTTTCAATTTTCTTCTACCCTCAATGGAGAAAGAAGCAAGATCCTTGTTGACTAGTAGGGCAAAAAACTGGTTATTGATGGAATACGGAAAGGTTTTGTGGAATAAAGTCTCTGTGGGACCATATCAACGGAAAGAGAATGACATTAGTTCAGACGATGAAGCTGCACCCAGGGTCATGGCTTGCTGTTGGGGCCCTGGGAAGCCAGCAACCACTTTTGTTATGTTAGATTCATCGGGGGAGGTGCTAGATGTGCTTTACACGGGATCTCTCACCTTACGCTCCCAGAACGTTAACGATCAGCAACGGAAGAAAAATGACCAAGAACGTGTTTTGAAGTTCATGACTGATCACCAACCACATGTGGCTGTTCTAGGAGCTGTTAATTTGTCTTGTGTTCGCCTGAAAGAAGATATTTACGAGATAATCTTTAAGATGGTGGAGGAGAATCCTAGAGATGTTGGACACGATATGGATGGGTTAAGCATTGTCTATGGAGATGAATCTTTGGCTCGCCTGTATGAAAACTCTCGCATTTCATCTGATCAGCTACCTGCACAATCAGGCATTGTGAAGCGTGCTGTTGCTCTGGGGCGTTACCTTCAAAATCCGTTGGCAATGGTTGCCACTCTTTGTGGGCCAGGAAGAGAAATCTTATCTTGGAAACTCAATCCTTTGGAGAACTTTCTCACCCCAGATGAGAAGTATGCAATGATTGAACAAGTCATGGTAGATGTTACAAACCAAGTAGGCCTCGACATAAATTTGGCTATAAGCCACGAATGGTTATTTGCACCTTTACAATTCATTTCTGGGCTCGGACCTAGAAAAGCAGCATTTTTACAGCGATCGTTGGTAAGATCTGGTGCAATATTTACTCGGAAGGACTTTTTGACAGCACATGGGTTAAGTAAAAAGGTGTTTGTTAATGCAGTTGGTTTCTTGCGTGTTCGGCGCAGTGGGCTGGCTGCTAGCAGCAGCCAATTTATTGATCTGTTGGATGATACAAGAATTCATCCAGAATCCTATATTCTTGCACAAGAATTGGCCAAAGATGTTTTTGAAGTTGATGGTGGCAATGATGATGAAGATGCTATGGAGATGGCTATAGAACATGTTAGGGATCGGCCTGCTTATCTAAAAAATCTTGATGTTGAAGTGTATGCTAAAAGCAAAGAGCGCGAGAATAAGATACAAACATTTTGTGACATCAGGAGAGAATTAATACAGGGTTTTCAGGATTGGCGTAAGAAATATGAAGAACTAAGTCAAGATGATGAATTCTATATGATTTCAGGTGAAACTGAAGATACCCTTGCTGAAGGAAGAATTGTGCTGGCCACAGTTCGCAGGGTACAAGCCCAAAGGGCAATATGTGCACTTGAATCTGGACTGACTGGTATGCTTATGAAAGAAGACTATTCAGATGATTCAAGGGATATTTCTGACTTATCTGAGAGACTGAATGAGGGTGACATTCTCACGTGCAAGATCAAATCTATTCAAAAGAATAGGTATCAGGTGTTCCTAGTTTGTAGAGAGAGTGAAATGAGAAATAATCGAAATCAAAATATTCAGCATCTCGATTCCTATTACCATGAAGACAGGAGAAGTCTACAGACAGAGCAAGAAAAAGCTCGGAAGGAGAAAGAGCTTGCGAAAAAACATTTCAAGCCACGGATGATTGTTCATCCTCGCTTCCAGAATATTACGGCTGATGAAGCAATGAAGTTCTTATCTGATAAAGATCCTGGGGAAAGTATTATTCGTCCTAGTTCCCGTGGGCCTTCGTATTTGACCTTAACTCTGAAAGTTTACGATGGAGTTTATGCTCACAAAGACGTAGTTGAAGGTGGAAAGGAACACAAGGATATCACTAGCTTACTCCGTATTGGAAAGACTCTGAAAATTGGAGAGGACACTTTTGAAGATTTAGATGAGGTAATGGATCGTTATGTTGATCCCCTGGTGTCTCACTTGAAGGCAATGCTAAATTATCGCAAATTCCGACGGGGCACAAAAGCAGAGGTTGATGAACTGTTGAAGATTGAAAAATTGGAGTTTCCTATGAGGATTGTTTATTGTTTCGGGATATCACATGAACATCCAGGGACTTTCATACTGACCTATATACGGAGTACAAATCCACACCATGAGTATGTTGGGCTGTATCCTAAGGGGTTCAAGTTCAGAAAAAGGATGTTTGAGAGCATTGATCGGCTTGTAGCACATTTTCAGAAGTATATTGATGAGCCTCAACATGAGTCCGGACCATCAATTAGATCAGTTGCTGCTATGGTGCCCATGCGAAGCCCTGCAACTGGGGGTTCTTCGGGTGCATCCGCAGGATGGGGTGGTTCAAACAATGAGGGTGGTTGGAGAGGCCAGTCGTTTGACAGGGATAGGTCTTCTACACCGAGTTCGCGAACAGGCAGAAATGATTACAGAAATGGTGGTGGTCGAGATGGACATCCAAGTGGCCTACCTAGACCATATGGGGGGCGCGGTCGTGGAACATATAACGATAGCCGAGGCAATAATGAGAGACATGATTCAGGTTTTGATGGTCCTACATGGGGTTCAGATACCAAGGATGGCAATGATGGCTTGGGCAACTTTCCAGGTGCAAAGGTTCAAAACTCACCTGGCAGGGAAGCTTTCCCAGGTGGCTGGGGTACAGGTGGAAGTGGTAGTGGAGGAGGCAGCAGCTGGGCTGGTGGTGGTGGAAGTGGCTGGGGTCAAGAAAGTGGTGGTGGCTCAGGAGGATGGGGTGGGGCCGCTGCAAATGATGCTGCTGCTGATAATGAGCCTTCAGGATGGGGTTCTGACTCAAAAAAGAAGGGTTCGGGTGATGGTACTTCAGGATGGGGTTCTCAGAGTGGAGGTGGCGGTGGTGGTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000785 GO:0000988 GO:0000990 GO:0000991 GO:0002637 GO:0002682 GO:0002694 GO:0002697 GO:0002700 GO:0002703 GO:0002706 GO:0002712 GO:0002819 GO:0002822 GO:0002889 GO:0003006 GO:0003674 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006325 GO:0006338 GO:0006342 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0010793 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030054 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031491 GO:0031974 GO:0031981 GO:0032239 GO:0032268 GO:0032269 GO:0032386 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032786 GO:0032879 GO:0032880 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0033157 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034728 GO:0035327 GO:0040029 GO:0042393 GO:0042789 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0043954 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045191 GO:0045595 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0046822 GO:0046825 GO:0046831 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050684 GO:0050776 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0051049 GO:0051052 GO:0051128 GO:0051129 GO:0051147 GO:0051171 GO:0051172 GO:0051173 GO:0051223 GO:0051239 GO:0051246 GO:0051248 GO:0051249 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0055044 GO:0060255 GO:0060341 GO:0061085 GO:0061086 GO:0061458 GO:0065007 GO:0070013 GO:0070201 GO:0070827 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902275 GO:1902679 GO:1902680 GO:1903311 GO:1903506 GO:1903507 GO:1903508 GO:1903827 GO:1905268 GO:2000026 GO:2000112 GO:2000113 GO:2000197 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DLD HHH_7 HTH_44 SH2_2 SPT6_acidic YqgF

Protein Analysis

1634

Amino Acids

184.49

Weight (kDa)

4.99

Isoelectric Point (pI)

44.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPT6_acidic PF14632 35 - 120 1.8e-16 Acidic N-terminal SPT6
HTH_44 PF14641 293 - 410 2.6e-06 Helix-turn-helix DNA-binding domain of SPT6
Tex_central_region PF22706 519 - 688 1.1e-06 Tex central region-like
YqgF PF14639 723 - 879 4.2e-17 Holliday-junction resolvase-like of SPT6
HHH_7 PF14635 883 - 984 1.1e-20 Helix-hairpin-helix motif
Spt6_S1 PF21710 1095 - 1183 1.4e-08 Spt6, S1/OB domain
SH2_2 PF14633 1199 - 1414 6.8e-69 SH2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 560
Acc36I ACCTGC 1 cut(s) 2563
AccB1I GGYRCC 2 cut(s) 634, 4300
AccBSI CCGCTC 1 cut(s) 205
AccI GTMKAC 3 cut(s) 84, 564, 3616
AccII CGCG 4 cut(s) 319, 3183, 4426, 4506
AccIII TCCGGA 1 cut(s) 4268
AclI AACGTT 1 cut(s) 2292
AclWI GGATC 7 cut(s) 1079, 2037, 2275, 3132, 3743, 3956, 3957
AcoI YGGCCR 2 cut(s) 3048, 3339
AcsI RAATTY 9 cut(s) 332, 572, 761, 840, 970, 2764, 3012, 3281, 4004
AcuI CTGAAG 7 cut(s) 522, 1175, 1869, 3327, 3342, 4797, 4845
AcvI CACGTG 1 cut(s) 3486
AcyI GRCGYC 1 cut(s) 1565
AdeI CACNNNGTG 1 cut(s) 1018
AfaI GTAC 9 cut(s) 412, 907, 937, 1149, 1928, 3357, 4141, 4678, 4858
AflII CTTAAG 2 cut(s) 446, 611
AflIII ACRYGT 4 cut(s) 1592, 2329, 2362, 3115
AhlI ACTAGT 1 cut(s) 2054
AjuI GAANNNNNNNTTGG 2 cut(s) 763, 795
AleI CACNNNNGTG 2 cut(s) 1135, 1963
Alw21I GWGCWC 5 cut(s) 45, 291, 1210, 1626, 3382
Alw26I GTCTC 7 cut(s) 1259, 1556, 1601, 2116, 3454, 3978, 4540
Alw44I GTGCAC 1 cut(s) 3378
AlwI GGATC 7 cut(s) 1079, 2037, 2275, 3132, 3743, 3956, 3957
AlwNI CAGNNNCTG 2 cut(s) 4292, 4710
Aor13HI TCCGGA 1 cut(s) 4268
ApaI GGGCCC 1 cut(s) 2198
ApaLI GTGCAC 1 cut(s) 3378
ApoI RAATTY 9 cut(s) 332, 572, 761, 840, 970, 2764, 3012, 3281, 4004
ArsI GACNNNNNNTTYG 2 cut(s) 557, 589
AseI ATTAAT 1 cut(s) 3224
Asp700I GAANNNNTTC 2 cut(s) 840, 1761
AspLEI GCGC 4 cut(s) 321, 2958, 3183, 4506
AsuNHI GCTAGC 1 cut(s) 2972
AvaII GGWCC 6 cut(s) 373, 1155, 2120, 2822, 4271, 4568
AxyI CCTNAGG 2 cut(s) 1614, 4176
BaeGI GKGCMC 4 cut(s) 2198, 3382, 4019, 4305
BaeI ACNNNNGTAYC 2 cut(s) 1139, 1172
BalI TGGCCA 2 cut(s) 3050, 3341
BanI GGYRCC 2 cut(s) 634, 4300
BanII GRGCYC 4 cut(s) 45, 291, 2198, 2820
BbrPI CACGTG 1 cut(s) 3486
BbsI GAAGAC 5 cut(s) 129, 1896, 3423, 3609, 4401
Bbv12I GWGCWC 5 cut(s) 45, 291, 1210, 1626, 3382
BceAI ACGGC 2 cut(s) 109, 3729
BcgI CGANNNNNNTGC 2 cut(s) 2147, 2181
BciVI GTATCC 1 cut(s) 4182
BclI TGATCA 3 cut(s) 1108, 2350, 2545
BcoDI GTCTC 7 cut(s) 1259, 1556, 1601, 2116, 3454, 3978, 4540
BcuI ACTAGT 1 cut(s) 2054
BfmI CTRYAG 7 cut(s) 432, 659, 701, 1323, 1447, 3108, 3617
BfrI CTTAAG 2 cut(s) 446, 611
BfuAI ACCTGC 1 cut(s) 2563
BfuI GTATCC 1 cut(s) 4182
BglI GCCNNNNNGGC 1 cut(s) 3368
BglII AGATCT 1 cut(s) 2861
BmcAI AGTACT 1 cut(s) 1928
Bme18I GGWCC 6 cut(s) 373, 1155, 2120, 2822, 4271, 4568
BmrI ACTGGG 1 cut(s) 4332
BmsI GCATC 8 cut(s) 1133, 1543, 1810, 1987, 3082, 3589, 4349, 4780
BmtI GCTAGC 1 cut(s) 2976
BmuI ACTGGG 1 cut(s) 4332
BpiI GAAGAC 5 cut(s) 129, 1896, 3423, 3609, 4401
BplI GAGNNNNNCTC 2 cut(s) 349, 381
BpmI CTGGAG 2 cut(s) 314, 1568
Bpu10I CCTNAGC 2 cut(s) 366, 4759
BpuEI CTTGAG 1 cut(s) 509
BsaAI YACGTR 1 cut(s) 3486
BsaBI GATNNNNATC 2 cut(s) 3747, 4470
BsaHI GRCGYC 1 cut(s) 1565
BsaI GGTCTC 1 cut(s) 1259
BsaWI WCCGGW 2 cut(s) 1885, 4268
Bse1I ACTGG 6 cut(s) 418, 868, 2075, 3403, 4327, 4387
Bse21I CCTNAGG 2 cut(s) 1614, 4176
Bse3DI GCAATG 8 cut(s) 495, 1605, 2625, 2718, 3085, 3732, 3993, 4606
Bse8I GATNNNNATC 2 cut(s) 3747, 4470
BseAI TCCGGA 1 cut(s) 4268
BseJI GATNNNNATC 2 cut(s) 3747, 4470
BseMI GCAATG 8 cut(s) 495, 1605, 2625, 2718, 3085, 3732, 3993, 4606
BseMII CTCAG 6 cut(s) 368, 380, 1628, 3447, 4773, 4889
BseNI ACTGG 6 cut(s) 418, 868, 2075, 3403, 4327, 4387
BseSI GKGCMC 4 cut(s) 2198, 3382, 4019, 4305
BseYI CCCAGC 3 cut(s) 4671, 4710, 4734
BsgI GTGCAG 4 cut(s) 1040, 1941, 2151, 2541
Bsh1236I CGCG 4 cut(s) 319, 3183, 4426, 4506
Bsh1285I CGRYCG 2 cut(s) 2852, 4510
BshNI GGYRCC 2 cut(s) 634, 4300
BsiEI CGRYCG 2 cut(s) 2852, 4510
BsiHKAI GWGCWC 5 cut(s) 45, 291, 1210, 1626, 3382
BsiSI CCGG 2 cut(s) 1886, 4269
BslFI GGGAC 7 cut(s) 89, 386, 815, 998, 1417, 2133, 4126
BsmAI GTCTC 7 cut(s) 1259, 1556, 1601, 2116, 3454, 3978, 4540
BsmBI CGTCTC 1 cut(s) 1556
BsmFI GGGAC 7 cut(s) 89, 386, 815, 998, 1417, 2133, 4126
Bso31I GGTCTC 1 cut(s) 1259
Bsp120I GGGCCC 1 cut(s) 2194
Bsp1286I GDGCHC 9 cut(s) 45, 291, 1210, 1626, 2198, 2820, 3382, 4019, 4305
Bsp13I TCCGGA 1 cut(s) 4268
Bsp68I TCGCGA 1 cut(s) 4426
BspCNI CTCAG 6 cut(s) 367, 379, 1627, 3448, 4772, 4888
BspEI TCCGGA 1 cut(s) 4268
BspFNI CGCG 4 cut(s) 319, 3183, 4426, 4506
BspHI TCATGA 1 cut(s) 2343
BspMAI CTGCAG 5 cut(s) 436, 663, 705, 1327, 1451
BspMI ACCTGC 1 cut(s) 2563
BspOI GCTAGC 1 cut(s) 2976
BspPI GGATC 7 cut(s) 1079, 2037, 2275, 3132, 3743, 3956, 3957
BspQI GCTCTTC 1 cut(s) 195
BspT107I GGYRCC 2 cut(s) 634, 4300
BspTI CTTAAG 2 cut(s) 446, 611
BspTNI GGTCTC 1 cut(s) 1259
BsrBI CCGCTC 1 cut(s) 205
BsrDI GCAATG 8 cut(s) 495, 1605, 2625, 2718, 3085, 3732, 3993, 4606
BsrI ACTGG 6 cut(s) 418, 868, 2075, 3403, 4327, 4387
BssNI GRCGYC 1 cut(s) 1565
BssT1I CCWWGG 2 cut(s) 376, 4590
Bst4CI ACNGT 7 cut(s) 82, 215, 940, 1503, 1965, 3346, 4041
Bst6I CTCTTC 5 cut(s) 195, 498, 1190, 1845, 2641
BstACI GRCGYC 1 cut(s) 1565
BstAFI CTTAAG 2 cut(s) 446, 611
BstAPI GCANNNNNTGC 4 cut(s) 1018, 2624, 3377, 4790
BstBAI YACGTR 1 cut(s) 3486
BstDSI CCRYGG 2 cut(s) 3677, 3781
BstFNI CGCG 4 cut(s) 319, 3183, 4426, 4506
BstHHI GCGC 4 cut(s) 321, 2958, 3183, 4506
BstMAI GTCTC 7 cut(s) 1259, 1556, 1601, 2116, 3454, 3978, 4540
BstMCI CGRYCG 2 cut(s) 2852, 4510
BstNSI RCATGY 4 cut(s) 365, 1596, 2366, 3119
BstSFI CTRYAG 7 cut(s) 432, 659, 701, 1323, 1447, 3108, 3617
BstSLI GKGCMC 4 cut(s) 2198, 3382, 4019, 4305
BstUI CGCG 4 cut(s) 319, 3183, 4426, 4506
BstV2I GAAGAC 5 cut(s) 129, 1896, 3423, 3609, 4401
BstX2I RGATCY 5 cut(s) 1084, 2042, 2267, 2861, 3748
BstXI CCANNNNNNTGG 3 cut(s) 1642, 2179, 4671
BstYI RGATCY 5 cut(s) 1084, 2042, 2267, 2861, 3748
Bsu36I CCTNAGG 2 cut(s) 1614, 4176
BsuI GTATCC 1 cut(s) 4182
BtgI CCRYGG 2 cut(s) 3677, 3781
BtgZI GCGATG 1 cut(s) 1061
BtsI GCAGTG 1 cut(s) 2965
BtsIMutI CAGTG 3 cut(s) 220, 861, 2965
BtuMI TCGCGA 1 cut(s) 4426
BveI ACCTGC 1 cut(s) 2563
CaiI CAGNNNCTG 2 cut(s) 4292, 4710
CciI TCATGA 1 cut(s) 2343
CfoI GCGC 4 cut(s) 321, 2958, 3183, 4506
CseI GACGC 2 cut(s) 1260, 1573
Csp6I GTAC 9 cut(s) 411, 906, 936, 1148, 1927, 3356, 4140, 4677, 4857
CspCI CAANNNNNGTGG 2 cut(s) 4354, 4389
CviQI GTAC 9 cut(s) 411, 906, 936, 1148, 1927, 3356, 4140, 4677, 4857
DraI TTTAAA 1 cut(s) 1281
DraIII CACNNNGTG 1 cut(s) 1018
DrdI GACNNNNNNGTC 1 cut(s) 560
DseDI GACNNNNNNGTC 1 cut(s) 560
EaeI YGGCCR 2 cut(s) 3048, 3339
Eam1104I CTCTTC 5 cut(s) 195, 498, 1190, 1845, 2641
EarI CTCTTC 5 cut(s) 195, 498, 1190, 1845, 2641
Ecl136II GAGCTC 2 cut(s) 43, 289
Eco130I CCWWGG 2 cut(s) 376, 4590
Eco147I AGGCCT 3 cut(s) 963, 1420, 2754
Eco24I GRGCYC 4 cut(s) 45, 291, 2198, 2820
Eco31I GGTCTC 1 cut(s) 1259
Eco32I GATATC 2 cut(s) 3874, 4095
Eco47I GGWCC 6 cut(s) 373, 1155, 2120, 2822, 4271, 4568
Eco53kI GAGCTC 2 cut(s) 43, 289
Eco57I CTGAAG 7 cut(s) 522, 1175, 1869, 3327, 3342, 4797, 4845
Eco72I CACGTG 1 cut(s) 3486
Eco81I CCTNAGG 2 cut(s) 1614, 4176
EcoICRI GAGCTC 2 cut(s) 43, 289
EcoO109I RGGNCCY 4 cut(s) 373, 479, 2194, 2195
EcoRI GAATTC 4 cut(s) 840, 970, 3012, 3281
EcoRV GATATC 2 cut(s) 3874, 4095
EcoT14I CCWWGG 2 cut(s) 376, 4590
EcoT38I GRGCYC 4 cut(s) 45, 291, 2198, 2820
ErhI CCWWGG 2 cut(s) 376, 4590
Esp3I CGTCTC 1 cut(s) 1556
FalI AAGNNNNNCTT 6 cut(s) 1352, 1384, 1445, 1477, 3300, 3332
FaqI GGGAC 7 cut(s) 89, 386, 815, 998, 1417, 2133, 4126
FauI CCCGC 2 cut(s) 198, 324
FauNDI CATATG 2 cut(s) 1641, 4495
FbaI TGATCA 3 cut(s) 1108, 2350, 2545
FblI GTMKAC 3 cut(s) 84, 564, 3616
FriOI GRGCYC 4 cut(s) 45, 291, 2198, 2820
GlaI GCGC 4 cut(s) 320, 2957, 3182, 4505
GsaI CCCAGC 3 cut(s) 4675, 4714, 4738
GsuI CTGGAG 2 cut(s) 314, 1568
HapII CCGG 2 cut(s) 1886, 4269
HgaI GACGC 2 cut(s) 1260, 1573
HhaI GCGC 4 cut(s) 321, 2958, 3183, 4506
Hin1I GRCGYC 1 cut(s) 1565
Hin6I GCGC 4 cut(s) 319, 2956, 3181, 4504
HinP1I GCGC 4 cut(s) 319, 2956, 3181, 4504
HincII GTYRAC 4 cut(s) 85, 565, 2052, 2296
HindII GTYRAC 4 cut(s) 85, 565, 2052, 2296
HindIII AAGCTT 5 cut(s) 443, 608, 1758, 1859, 4656
HpaI GTTAAC 1 cut(s) 2296
HpaII CCGG 2 cut(s) 1886, 4269
Hpy166II GTNNAC 9 cut(s) 85, 565, 1354, 1722, 2052, 2296, 3380, 3617, 3817
Hpy8I GTNNAC 9 cut(s) 85, 565, 1354, 1722, 2052, 2296, 3380, 3617, 3817
Hpy99I CGWCG 8 cut(s) 26, 29, 50, 74, 107, 569, 1254, 4014
HpyCH4III ACNGT 7 cut(s) 82, 215, 940, 1503, 1965, 3346, 4041
HpyCH4IV ACGT 4 cut(s) 2292, 2329, 3485, 3843
HpySE526I ACGT 4 cut(s) 2292, 2329, 3485, 3843
Hsp92I GRCGYC 1 cut(s) 1565
HspAI GCGC 4 cut(s) 319, 2956, 3181, 4504
Kpn2I TCCGGA 1 cut(s) 4268
Ksp22I TGATCA 3 cut(s) 1108, 2350, 2545
KspAI GTTAAC 1 cut(s) 2296
LguI GCTCTTC 1 cut(s) 195
LmnI GCTCC 5 cut(s) 294, 1631, 1692, 2288, 2378
LweI GCATC 8 cut(s) 1133, 1543, 1810, 1987, 3082, 3589, 4349, 4780
MaeII ACGT 4 cut(s) 2292, 2329, 3485, 3843
MaeIII GTNAC 8 cut(s) 1311, 1487, 1518, 1870, 2597, 2737, 3206, 3473
MbiI CCGCTC 1 cut(s) 205
MfeI CAATTG 3 cut(s) 771, 1514, 1752
MflI RGATCY 5 cut(s) 1084, 2042, 2267, 2861, 3748
MhlI GDGCHC 9 cut(s) 45, 291, 1210, 1626, 2198, 2820, 3382, 4019, 4305
MlsI TGGCCA 2 cut(s) 3050, 3341
MluNI TGGCCA 2 cut(s) 3050, 3341
MlyI GAGTC 3 cut(s) 3895, 4274, 4823
MmeI TCCRAC 5 cut(s) 45, 2443, 2979, 4033, 4358
Mox20I TGGCCA 2 cut(s) 3050, 3341
MroI TCCGGA 1 cut(s) 4268
MroXI GAANNNNTTC 2 cut(s) 840, 1761
MscI TGGCCA 2 cut(s) 3050, 3341
MslI CAYNNNNRTG 5 cut(s) 1100, 1135, 1963, 4158, 4476
Msp20I TGGCCA 2 cut(s) 3050, 3341
MspA1I CMGCKG 4 cut(s) 706, 1978, 4710, 4781
MspCI CTTAAG 2 cut(s) 446, 611
MspI CCGG 2 cut(s) 1886, 4269
MunI CAATTG 3 cut(s) 771, 1514, 1752
MvnI CGCG 4 cut(s) 319, 3183, 4426, 4506
NdeI CATATG 2 cut(s) 1641, 4495
NheI GCTAGC 1 cut(s) 2972
NmeAIII GCCGAG 1 cut(s) 4556
NmuCI GTSAC 4 cut(s) 1311, 1518, 3206, 3473
NruI TCGCGA 1 cut(s) 4426
NspI RCATGY 4 cut(s) 365, 1596, 2366, 3119
OliI CACNNNNGTG 2 cut(s) 1135, 1963
PaeI GCATGC 1 cut(s) 365
PagI TCATGA 1 cut(s) 2343
PasI CCCWGGG 2 cut(s) 2172, 2198
PceI AGGCCT 3 cut(s) 963, 1420, 2754
PciI ACATGT 3 cut(s) 1592, 2362, 3115
PciSI GCTCTTC 1 cut(s) 195
PcsI WCGNNNNNNNCGW 4 cut(s) 45, 99, 123, 4006
PdmI GAANNNNTTC 2 cut(s) 840, 1761
PflFI GACNNNGTC 1 cut(s) 80
PfoI TCCNGGA 1 cut(s) 291
Ple19I CGATCG 1 cut(s) 2852
PleI GAGTC 3 cut(s) 3895, 4273, 4823
PmaCI CACGTG 1 cut(s) 3486
PmlI CACGTG 1 cut(s) 3486
PpsI GAGTC 3 cut(s) 3895, 4273, 4823
Ppu21I YACGTR 1 cut(s) 3486
PpuMI RGGWCCY 1 cut(s) 373
PscI ACATGT 3 cut(s) 1592, 2362, 3115
PshBI ATTAAT 1 cut(s) 3224
Psp124BI GAGCTC 2 cut(s) 45, 291
Psp1406I AACGTT 1 cut(s) 2292
Psp5II RGGWCCY 1 cut(s) 373
PspCI CACGTG 1 cut(s) 3486
PspFI CCCAGC 3 cut(s) 4671, 4710, 4734
PspOMI GGGCCC 1 cut(s) 2194
PspPPI RGGWCCY 1 cut(s) 373
PsrI GAACNNNNNNTAC 2 cut(s) 3509, 3541
PstI CTGCAG 5 cut(s) 436, 663, 705, 1327, 1451
PstNI CAGNNNCTG 2 cut(s) 4292, 4710
PsuI RGATCY 5 cut(s) 1084, 2042, 2267, 2861, 3748
PsyI GACNNNGTC 1 cut(s) 80
PvuI CGATCG 1 cut(s) 2852
PvuII CAGCTG 2 cut(s) 706, 4710
RruI TCGCGA 1 cut(s) 4426
RsaI GTAC 9 cut(s) 412, 907, 937, 1149, 1928, 3357, 4141, 4678, 4858
RsaNI GTAC 9 cut(s) 411, 906, 936, 1148, 1927, 3356, 4140, 4677, 4857
RseI CAYNNNNRTG 5 cut(s) 1100, 1135, 1963, 4158, 4476
SacI GAGCTC 2 cut(s) 45, 291
SalI GTCGAC 2 cut(s) 83, 563
SapI GCTCTTC 1 cut(s) 195
ScaI AGTACT 1 cut(s) 1928
SchI GAGTC 3 cut(s) 3895, 4274, 4823
SduI GDGCHC 9 cut(s) 45, 291, 1210, 1626, 2198, 2820, 3382, 4019, 4305
SfaNI GCATC 8 cut(s) 1133, 1543, 1810, 1987, 3082, 3589, 4349, 4780
SfcI CTRYAG 7 cut(s) 432, 659, 701, 1323, 1447, 3108, 3617
SinI GGWCC 6 cut(s) 373, 1155, 2120, 2822, 4271, 4568
SmiMI CAYNNNNRTG 5 cut(s) 1100, 1135, 1963, 4158, 4476
SmlI CTYRAG 3 cut(s) 446, 488, 611
SmoI CTYRAG 3 cut(s) 446, 488, 611
SpeI ACTAGT 1 cut(s) 2054
SphI GCATGC 1 cut(s) 365
SseBI AGGCCT 3 cut(s) 963, 1420, 2754
SspI AATATT 3 cut(s) 2874, 3574, 3709
SstI GAGCTC 2 cut(s) 45, 291
StuI AGGCCT 3 cut(s) 963, 1420, 2754
StyI CCWWGG 2 cut(s) 376, 4590
TaaI ACNGT 7 cut(s) 82, 215, 940, 1503, 1965, 3346, 4041
TaiI ACGT 4 cut(s) 2295, 2332, 3488, 3846
TatI WGTACW 2 cut(s) 1926, 4139
TauI GCSGC 4 cut(s) 99, 102, 343, 4781
TscAI CASTG 3 cut(s) 220, 868, 2965
TseFI GTSAC 4 cut(s) 1311, 1518, 3206, 3473
Tsp45I GTSAC 4 cut(s) 1311, 1518, 3206, 3473
TspGWI ACGGA 9 cut(s) 549, 1755, 2103, 2146, 2323, 2601, 3694, 3878, 4150
TspRI CASTG 3 cut(s) 220, 868, 2965
Tth111I GACNNNGTC 1 cut(s) 80
Vha464I CTTAAG 2 cut(s) 446, 611
VneI GTGCAC 1 cut(s) 3378
VpaK11BI GGWCC 6 cut(s) 373, 1155, 2120, 2822, 4271, 4568
VspI ATTAAT 1 cut(s) 3224
XapI RAATTY 9 cut(s) 332, 572, 761, 840, 970, 2764, 3012, 3281, 4004
XceI RCATGY 4 cut(s) 365, 1596, 2366, 3119
XcmI CCANNNNNNNNNTGG 1 cut(s) 4160
XmiI GTMKAC 3 cut(s) 84, 564, 3616
XmnI GAANNNNTTC 2 cut(s) 840, 1761
ZrmI AGTACT 1 cut(s) 1928
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.