Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G65440 AT1G65440 AT1G65440 AT1G65440 |
| fragaria_vesca | FvH4_1g02480 FvH4_1g29220 |
| malus_domestica | MD00G1108000.v1.1 MD10G1173400.v1.1 |
| prunus_persica | Prupe.7G019900_v2.0.a1 Prupe.7G019900_v2.0.a1 Prupe.7G019900_v2.0.a1 |
| pyrus_communis | pycom12g09080 |
| rosa_chinensis | RchiOBHm_Chr3g0494601 |
| rosa_laevigata | RLG00000022666 |
| rosa_multiflora | Rmu_sc0002762.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00391060 |
| rosa_rugosa | Rorug03G0266000 |
| rosa_samantha | Rh3AG316000 Rh3BG351500 Rh3CG348100 Rh3DG350700 |
| rosa_wichuraiana | Rw3G027590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 8 cut(s) | 5, 108, 208, 300, 392, 399, 415, 422 |
| AclWI | GGATC | 4 cut(s) | 118, 118, 131, 136 |
| AcyI | GRCGYC | 1 cut(s) | 303 |
| AfaI | GTAC | 1 cut(s) | 309 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 198, 269 |
| AflIII | ACRYGT | 2 cut(s) | 159, 228 |
| AgsI | TTSAA | 1 cut(s) | 36 |
| AhlI | ACTAGT | 1 cut(s) | 491 |
| AjnI | CCWGG | 1 cut(s) | 219 |
| AluBI | AGCT | 3 cut(s) | 54, 150, 481 |
| AluI | AGCT | 3 cut(s) | 54, 150, 481 |
| Alw21I | GWGCWC | 1 cut(s) | 182 |
| Alw26I | GTCTC | 2 cut(s) | 339, 398 |
| AlwI | GGATC | 4 cut(s) | 118, 118, 131, 136 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 153, 386 |
| ApeKI | GCWGC | 8 cut(s) | 150, 153, 204, 386, 389, 459, 462, 465 |
| AxyI | CCTNAGG | 1 cut(s) | 267 |
| BamHI | GGATCC | 1 cut(s) | 123 |
| Bbv12I | GWGCWC | 1 cut(s) | 182 |
| BbvI | GCAGC | 8 cut(s) | 137, 140, 191, 373, 401, 471, 474, 477 |
| BccI | CCATC | 1 cut(s) | 107 |
| BciT130I | CCWGG | 1 cut(s) | 221 |
| BcoDI | GTCTC | 2 cut(s) | 339, 398 |
| BcuI | ACTAGT | 1 cut(s) | 491 |
| BfaI | CTAG | 1 cut(s) | 492 |
| BfmI | CTRYAG | 1 cut(s) | 387 |
| Bme1390I | CCNGG | 1 cut(s) | 221 |
| BmiI | GGNNCC | 2 cut(s) | 125, 295 |
| BmrFI | CCNGG | 1 cut(s) | 221 |
| BpuEI | CTTGAG | 1 cut(s) | 32 |
| BsaHI | GRCGYC | 1 cut(s) | 303 |
| BsaJI | CCNNGG | 1 cut(s) | 219 |
| BsaWI | WCCGGW | 1 cut(s) | 126 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 198, 269 |
| Bse21I | CCTNAGG | 1 cut(s) | 267 |
| BseBI | CCWGG | 1 cut(s) | 221 |
| BseDI | CCNNGG | 1 cut(s) | 219 |
| BseGI | GGATG | 2 cut(s) | 81, 164 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 198, 269 |
| BseMII | CTCAG | 1 cut(s) | 281 |
| BseRI | GAGGAG | 3 cut(s) | 65, 68, 369 |
| BseXI | GCAGC | 8 cut(s) | 137, 140, 191, 373, 401, 471, 474, 477 |
| BseYI | CCCAGC | 1 cut(s) | 146 |
| BsgI | GTGCAG | 1 cut(s) | 194 |
| BsiHKAI | GWGCWC | 1 cut(s) | 182 |
| BsiSI | CCGG | 3 cut(s) | 105, 127, 297 |
| BslFI | GGGAC | 1 cut(s) | 202 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 198, 269 |
| BsmAI | GTCTC | 2 cut(s) | 339, 398 |
| BsmBI | CGTCTC | 1 cut(s) | 398 |
| BsmFI | GGGAC | 1 cut(s) | 202 |
| Bsp1286I | GDGCHC | 1 cut(s) | 182 |
| Bsp143I | GATC | 3 cut(s) | 110, 123, 141 |
| BspACI | CCGC | 8 cut(s) | 5, 108, 208, 300, 392, 399, 415, 422 |
| BspCNI | CTCAG | 1 cut(s) | 280 |
| BspHI | TCATGA | 1 cut(s) | 500 |
| BspLI | GGNNCC | 2 cut(s) | 125, 295 |
| BspMAI | CTGCAG | 1 cut(s) | 391 |
| BspPI | GGATC | 4 cut(s) | 118, 118, 131, 136 |
| BspQI | GCTCTTC | 1 cut(s) | 471 |
| BssECI | CCNNGG | 1 cut(s) | 219 |
| BssMI | GATC | 3 cut(s) | 110, 123, 141 |
| BssNI | GRCGYC | 1 cut(s) | 303 |
| Bst2UI | CCWGG | 1 cut(s) | 221 |
| Bst6I | CTCTTC | 4 cut(s) | 268, 360, 428, 471 |
| BstACI | GRCGYC | 1 cut(s) | 303 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 386 |
| BstC8I | GCNNGC | 1 cut(s) | 483 |
| BstDEI | CTNAG | 1 cut(s) | 267 |
| BstEII | GGTNACC | 1 cut(s) | 7 |
| BstF5I | GGATG | 2 cut(s) | 81, 164 |
| BstKTI | GATC | 3 cut(s) | 113, 126, 144 |
| BstMAI | GTCTC | 2 cut(s) | 339, 398 |
| BstMBI | GATC | 3 cut(s) | 110, 123, 141 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 300, 386, 465 |
| BstNI | CCWGG | 1 cut(s) | 221 |
| BstNSI | RCATGY | 2 cut(s) | 163, 232 |
| BstPI | GGTNACC | 1 cut(s) | 7 |
| BstSCI | CCNGG | 1 cut(s) | 219 |
| BstSFI | CTRYAG | 1 cut(s) | 387 |
| BstV1I | GCAGC | 8 cut(s) | 137, 140, 191, 373, 401, 471, 474, 477 |
| BstX2I | RGATCY | 3 cut(s) | 110, 123, 141 |
| BstYI | RGATCY | 3 cut(s) | 110, 123, 141 |
| Bsu36I | CCTNAGG | 1 cut(s) | 267 |
| BtsCI | GGATG | 2 cut(s) | 81, 164 |
| BtsI | GCAGTG | 1 cut(s) | 182 |
| BtsIMutI | CAGTG | 1 cut(s) | 182 |
| Cac8I | GCNNGC | 1 cut(s) | 483 |
| CaiI | CAGNNNCTG | 2 cut(s) | 153, 386 |
| CciI | TCATGA | 1 cut(s) | 500 |
| CseI | GACGC | 3 cut(s) | 292, 392, 415 |
| Csp6I | GTAC | 1 cut(s) | 308 |
| CviAII | CATG | 3 cut(s) | 160, 229, 501 |
| CviJI | RGCY | 7 cut(s) | 32, 54, 150, 251, 294, 317, 481 |
| CviKI_1 | RGCY | 7 cut(s) | 32, 54, 150, 251, 294, 317, 481 |
| CviQI | GTAC | 1 cut(s) | 308 |
| DdeI | CTNAG | 1 cut(s) | 267 |
| DpnI | GATC | 3 cut(s) | 112, 125, 143 |
| DpnII | GATC | 3 cut(s) | 110, 123, 141 |
| Eam1104I | CTCTTC | 4 cut(s) | 268, 360, 428, 471 |
| EarI | CTCTTC | 4 cut(s) | 268, 360, 428, 471 |
| EciI | GGCGGA | 2 cut(s) | 123, 414 |
| Eco81I | CCTNAGG | 1 cut(s) | 267 |
| Eco91I | GGTNACC | 1 cut(s) | 7 |
| EcoO65I | GGTNACC | 1 cut(s) | 7 |
| EcoRII | CCWGG | 1 cut(s) | 219 |
| Esp3I | CGTCTC | 1 cut(s) | 398 |
| FaeI | CATG | 3 cut(s) | 163, 232, 504 |
| FaiI | YATR | 4 cut(s) | 116, 161, 230, 502 |
| FaqI | GGGAC | 1 cut(s) | 202 |
| FatI | CATG | 3 cut(s) | 159, 228, 500 |
| FokI | GGATG | 2 cut(s) | 68, 151 |
| FspBI | CTAG | 1 cut(s) | 492 |
| GsaI | CCCAGC | 1 cut(s) | 150 |
| HapII | CCGG | 3 cut(s) | 105, 127, 297 |
| HgaI | GACGC | 3 cut(s) | 292, 392, 415 |
| Hin1I | GRCGYC | 1 cut(s) | 303 |
| Hin1II | CATG | 3 cut(s) | 163, 232, 504 |
| HinfI | GANTC | 2 cut(s) | 118, 427 |
| HpaII | CCGG | 3 cut(s) | 105, 127, 297 |
| Hpy188I | TCNGA | 5 cut(s) | 123, 141, 169, 432, 442 |
| Hpy188III | TCNNGA | 2 cut(s) | 49, 501 |
| Hpy99I | CGWCG | 2 cut(s) | 308, 344 |
| HpyAV | CCTTC | 1 cut(s) | 365 |
| HpyCH4IV | ACGT | 1 cut(s) | 17 |
| HpyCH4V | TGCA | 3 cut(s) | 175, 380, 389 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 300, 386, 465 |
| HpyF3I | CTNAG | 1 cut(s) | 267 |
| HpySE526I | ACGT | 1 cut(s) | 17 |
| Hsp92I | GRCGYC | 1 cut(s) | 303 |
| Hsp92II | CATG | 3 cut(s) | 163, 232, 504 |
| Kzo9I | GATC | 3 cut(s) | 110, 123, 141 |
| LguI | GCTCTTC | 1 cut(s) | 471 |
| LmnI | GCTCC | 3 cut(s) | 78, 185, 299 |
| Lsp1109I | GCAGC | 8 cut(s) | 137, 140, 191, 373, 401, 471, 474, 477 |
| MaeI | CTAG | 1 cut(s) | 492 |
| MaeII | ACGT | 1 cut(s) | 17 |
| MaeIII | GTNAC | 1 cut(s) | 7 |
| MalI | GATC | 3 cut(s) | 112, 125, 143 |
| MboI | GATC | 3 cut(s) | 110, 123, 141 |
| MboII | GAAGA | 5 cut(s) | 285, 377, 445, 488, 489 |
| MflI | RGATCY | 3 cut(s) | 110, 123, 141 |
| MhlI | GDGCHC | 1 cut(s) | 182 |
| MmeI | TCCRAC | 1 cut(s) | 420 |
| MseI | TTAA | 2 cut(s) | 135, 488 |
| MspA1I | CMGCKG | 2 cut(s) | 150, 392 |
| MspI | CCGG | 3 cut(s) | 105, 127, 297 |
| MspR9I | CCNGG | 1 cut(s) | 221 |
| MvaI | CCWGG | 1 cut(s) | 221 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 300, 386, 465 |
| NdeII | GATC | 3 cut(s) | 110, 123, 141 |
| NlaIII | CATG | 3 cut(s) | 163, 232, 504 |
| NlaIV | GGNNCC | 2 cut(s) | 125, 295 |
| NspI | RCATGY | 2 cut(s) | 163, 232 |
| PagI | TCATGA | 1 cut(s) | 500 |
| PciI | ACATGT | 2 cut(s) | 159, 228 |
| PciSI | GCTCTTC | 1 cut(s) | 471 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 286, 336 |
| PfeI | GAWTC | 2 cut(s) | 118, 427 |
| PscI | ACATGT | 2 cut(s) | 159, 228 |
| Psp6I | CCWGG | 1 cut(s) | 219 |
| PspEI | GGTNACC | 1 cut(s) | 7 |
| PspFI | CCCAGC | 1 cut(s) | 146 |
| PspGI | CCWGG | 1 cut(s) | 219 |
| PspN4I | GGNNCC | 2 cut(s) | 125, 295 |
| PstI | CTGCAG | 1 cut(s) | 391 |
| PstNI | CAGNNNCTG | 2 cut(s) | 153, 386 |
| PsuI | RGATCY | 3 cut(s) | 110, 123, 141 |
| PvuII | CAGCTG | 1 cut(s) | 150 |
| RsaI | GTAC | 1 cut(s) | 309 |
| RsaNI | GTAC | 1 cut(s) | 308 |
| SapI | GCTCTTC | 1 cut(s) | 471 |
| SaqAI | TTAA | 2 cut(s) | 135, 488 |
| Sau3AI | GATC | 3 cut(s) | 110, 123, 141 |
| ScrFI | CCNGG | 1 cut(s) | 221 |
| SduI | GDGCHC | 1 cut(s) | 182 |
| SetI | ASST | 5 cut(s) | 20, 56, 152, 440, 483 |
| SfcI | CTRYAG | 1 cut(s) | 387 |
| SmlI | CTYRAG | 1 cut(s) | 47 |
| SmoI | CTYRAG | 1 cut(s) | 47 |
| SpeI | ACTAGT | 1 cut(s) | 491 |
| SsiI | CCGC | 8 cut(s) | 5, 108, 208, 300, 392, 399, 415, 422 |
| SspMI | CTAG | 1 cut(s) | 492 |
| StyD4I | CCNGG | 1 cut(s) | 219 |
| TaiI | ACGT | 1 cut(s) | 20 |
| TaqI | TCGA | 2 cut(s) | 246, 339 |
| TauI | GCSGC | 3 cut(s) | 210, 303, 425 |
| TfiI | GAWTC | 2 cut(s) | 118, 427 |
| Tru1I | TTAA | 2 cut(s) | 135, 488 |
| Tru9I | TTAA | 2 cut(s) | 135, 488 |
| TscAI | CASTG | 1 cut(s) | 182 |
| TseI | GCWGC | 8 cut(s) | 150, 153, 204, 386, 389, 459, 462, 465 |
| TspDTI | ATGAA | 2 cut(s) | 131, 489 |
| TspGWI | ACGGA | 1 cut(s) | 357 |
| TspRI | CASTG | 1 cut(s) | 182 |
| XceI | RCATGY | 2 cut(s) | 163, 232 |
| XspI | CTAG | 1 cut(s) | 492 |