FvH4_1g02500

Adiponectin receptor protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0008678
Physical Location & Seq
Forward (+)
1399363 .. 1401977
2615 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g02500.t3

Sequence Viewer

Length: 1200 bp
ATGAGTCCCGGGGAAGGAGGAGGAGGAGCTGCTGTAAGTTTCAGGAAGAGATCAAAACGACGGTCAAACAATGCTGCCGGAGCTACGAAACTGGATCATCAAACCCAAAACCATGACGACAGTTTCTATTACCAGTCGTCTTCTTCGTCGTCCTCCTCTTCTGTTTCTAATTACGAGACCAGCAAGAAGAAGAGGAACAGGAAGAAGAAGGGTAAAGGGAAACACAACAACAACGTTGGAGGGTCGTCGAAACGATACGAGCTGCTGTCGTATTGGGAGTTGCCGGAATATATGAAGGACAACGAGTTCATTTTGAATTATTACCGAGCTGATTGGCCTATTCTCGAAGCTCTCTTCAGCGTTTTCCGTTGGCATAATGAAACTCTCAACATTTGGACGCATTTGATTGGGTTTGTTCTGTTCGTGGGTTTGACTATGGCGAATTTGTGGGAAGTGCCTCAGGTATCGGATCTCCTTGGCTTCTTCAACAGGTCCACATTTAGTGCAGCTACAAATGTTTCCCATAATTTTAGTGCGGAAATGAACAACATTGCATTACCCGGTGATCGATTGAACGTGACACTATGGCCGTTTTATGTGTTCTTATCTGGCTCTATGTTCTGCCTTCTCTCGAGCACCATTTGTCATCTGTTTTCATGCCACTCTCACCCCTTAAACGTCTTGCTCTTGCGCATAGACTATGCAGGCATCACCACCATGATCATCACCTCATTTTTCCCTCCGATTTACTACATCTTCCAATGCGACCCGCGCTGGCAAGTCATCTACCTCGGCGGCATCACACTAATGGGACTCTGCACCATCATCACACTGTTCTCCCCGAAGCTGTCTAGCTCCAGATTTCGAACCTTTCGAGCTCTTCTGTTTGCTTCATTGGGGTTGTTTGGGGTTGTGCCGGCGGTCCATGCCAGCATTGTGAATTGGGGCAATCCGAAGCGTGATATCACTCTGGGTTATGAGGTTGCCATGGCGGTTTTCTACTTGACAGGGACTGGATTTTACATCACTCGAATTCCCGAGAGGTGGAGGCCGGGGTGCTTCGATTTGGCAGGTCACAGCCATCAGATTTTTCATATTTTGGTGGTGATGGGTGCTTTGGCTCATTATGCTGCCATACTTATAATGCTAGACTGGCGAAGCACCTTGGGGTGTGACATCAACACTACTATTACTCTGTAA

Protein Analysis

400

Amino Acids

45.07

Weight (kDa)

9.3

Isoelectric Point (pI)

56.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HlyIII PF03006 122 - 381 2.1e-62 Haemolysin-III related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1142
Acc16I TGCGCA 1 cut(s) 692
Acc36I ACCTGC 1 cut(s) 1061
AccII CGCG 1 cut(s) 772
AciI CCGC 5 cut(s) 536, 770, 795, 920, 992
AclI AACGTT 1 cut(s) 234
AclWI GGATC 2 cut(s) 102, 477
AcoI YGGCCR 1 cut(s) 587
AcsI RAATTY 2 cut(s) 442, 1032
AcuI CTGAAG 1 cut(s) 340
AfiI CCNNNNNNNGG 2 cut(s) 14, 1044
AgsI TTSAA 3 cut(s) 316, 487, 574
AloI GAACNNNNNNTCC 2 cut(s) 290, 322
AluBI AGCT 9 cut(s) 29, 83, 262, 329, 350, 509, 847, 855, 878
AluI AGCT 9 cut(s) 29, 83, 262, 329, 350, 509, 847, 855, 878
Alw21I GWGCWC 2 cut(s) 638, 880
Alw26I GTCTC 1 cut(s) 170
AlwI GGATC 2 cut(s) 102, 477
AlwNI CAGNNNCTG 1 cut(s) 1013
Ama87I CYCGRG 3 cut(s) 8, 631, 1037
AoxI GGCC 3 cut(s) 335, 587, 1049
ApeKI GCWGC 5 cut(s) 29, 74, 262, 506, 1130
ApoI RAATTY 2 cut(s) 442, 1032
ArsI GACNNNNNNTTYG 2 cut(s) 47, 79
AspLEI GCGC 2 cut(s) 693, 774
AspS9I GGNCC 2 cut(s) 492, 922
AsuC2I CCSGG 4 cut(s) 9, 10, 561, 1053
AsuHPI GGTGA 5 cut(s) 575, 659, 703, 718, 1117
AsuII TTCGAA 1 cut(s) 865
AvaI CYCGRG 3 cut(s) 8, 631, 1037
AvaII GGWCC 2 cut(s) 492, 922
AxyI CCTNAGG 1 cut(s) 459
BanII GRGCYC 1 cut(s) 880
BbsI GAAGAC 1 cut(s) 132
Bbv12I GWGCWC 2 cut(s) 638, 880
BbvI GCAGC 5 cut(s) 16, 61, 249, 518, 1117
BccI CCATC 3 cut(s) 830, 1089, 1102
BceAI ACGGC 1 cut(s) 574
BclI TGATCA 1 cut(s) 720
BcnI CCSGG 4 cut(s) 9, 10, 561, 1053
BcoDI GTCTC 1 cut(s) 170
BfaI CTAG 2 cut(s) 852, 1148
BfuAI ACCTGC 1 cut(s) 1061
BisI GCNGC 6 cut(s) 30, 75, 263, 507, 796, 1131
BlsI GCNGC 6 cut(s) 31, 76, 264, 508, 797, 1132
Bme1390I CCNGG 4 cut(s) 9, 10, 561, 1053
Bme18I GGWCC 2 cut(s) 492, 922
BmeT110I CYCGRG 3 cut(s) 8, 631, 1037
BmgT120I GGNCC 2 cut(s) 492, 922
BmrFI CCNGG 4 cut(s) 9, 10, 561, 1053
BmsI GCATC 2 cut(s) 717, 807
BpiI GAAGAC 1 cut(s) 132
BpmI CTGGAG 1 cut(s) 841
Bpu14I TTCGAA 1 cut(s) 865
BpuMI CCSGG 4 cut(s) 9, 10, 561, 1053
Bsa29I ATCGAT 1 cut(s) 568
BsaI GGTCTC 1 cut(s) 170
BsaJI CCNNGG 7 cut(s) 8, 9, 475, 790, 987, 1052, 1164
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bsc4I CCNNNNNNNGG 2 cut(s) 14, 1044
Bse118I RCCGGY 1 cut(s) 916
Bse1I ACTGG 4 cut(s) 96, 133, 1018, 1157
Bse21I CCTNAGG 1 cut(s) 459
Bse3DI GCAATG 1 cut(s) 549
BseCI ATCGAT 1 cut(s) 568
BseDI CCNNGG 7 cut(s) 8, 9, 475, 790, 987, 1052, 1164
BseLI CCNNNNNNNGG 2 cut(s) 14, 1044
BseMI GCAATG 1 cut(s) 549
BseMII CTCAG 1 cut(s) 473
BseNI ACTGG 4 cut(s) 96, 133, 1018, 1157
BseRI GAGGAG 4 cut(s) 33, 36, 39, 145
BseXI GCAGC 5 cut(s) 16, 61, 249, 518, 1117
BsgI GTGCAG 2 cut(s) 525, 802
Bsh1236I CGCG 1 cut(s) 772
BshFI GGCC 3 cut(s) 337, 589, 1051
BshVI ATCGAT 1 cut(s) 568
BsiHKAI GWGCWC 2 cut(s) 638, 880
BsiHKCI CYCGRG 3 cut(s) 8, 631, 1037
BsiSI CCGG 6 cut(s) 9, 78, 284, 561, 917, 1052
BslFI GGGAC 2 cut(s) 825, 1024
BslI CCNNNNNNNGG 2 cut(s) 14, 1044
BsmAI GTCTC 1 cut(s) 170
BsmFI GGGAC 2 cut(s) 825, 1024
BsnI GGCC 3 cut(s) 337, 589, 1051
Bso31I GGTCTC 1 cut(s) 170
BsoBI CYCGRG 3 cut(s) 8, 631, 1037
Bsp119I TTCGAA 1 cut(s) 865
Bsp1286I GDGCHC 2 cut(s) 638, 880
Bsp143I GATC 5 cut(s) 50, 94, 469, 565, 720
Bsp19I CCATGG 1 cut(s) 987
BspACI CCGC 5 cut(s) 536, 770, 795, 920, 992
BspANI GGCC 3 cut(s) 337, 589, 1051
BspCNI CTCAG 1 cut(s) 472
BspDI ATCGAT 1 cut(s) 568
BspFNI CGCG 1 cut(s) 772
BspMI ACCTGC 1 cut(s) 1061
BspPI GGATC 2 cut(s) 102, 477
BspQI GCTCTTC 1 cut(s) 885
BspT104I TTCGAA 1 cut(s) 865
BspTNI GGTCTC 1 cut(s) 170
BsrDI GCAATG 1 cut(s) 549
BsrFI RCCGGY 1 cut(s) 916
BsrI ACTGG 4 cut(s) 96, 133, 1018, 1157
BssAI RCCGGY 1 cut(s) 916
BssECI CCNNGG 7 cut(s) 8, 9, 475, 790, 987, 1052, 1164
BssMI GATC 5 cut(s) 50, 94, 469, 565, 720
BssT1I CCWWGG 3 cut(s) 475, 987, 1164
Bst4CI ACNGT 3 cut(s) 63, 122, 834
Bst6I CTCTTC 5 cut(s) 41, 163, 185, 359, 885
BstBI TTCGAA 1 cut(s) 865
BstC8I GCNNGC 4 cut(s) 706, 776, 918, 931
BstDEI CTNAG 1 cut(s) 459
BstDSI CCRYGG 1 cut(s) 987
BstFNI CGCG 1 cut(s) 772
BstHHI GCGC 2 cut(s) 693, 774
BstKTI GATC 5 cut(s) 53, 97, 472, 568, 723
BstMAI GTCTC 1 cut(s) 170
BstMBI GATC 5 cut(s) 50, 94, 469, 565, 720
BstMWI GCNNNNNNNGC 5 cut(s) 80, 771, 926, 1127, 1153
BstSCI CCNGG 4 cut(s) 7, 8, 559, 1051
BstUI CGCG 1 cut(s) 772
BstV1I GCAGC 5 cut(s) 16, 61, 249, 518, 1117
BstV2I GAAGAC 1 cut(s) 132
BstX2I RGATCY 1 cut(s) 469
BstYI RGATCY 1 cut(s) 469
Bsu15I ATCGAT 1 cut(s) 568
Bsu36I CCTNAGG 1 cut(s) 459
BsuRI GGCC 3 cut(s) 337, 589, 1051
BsuTUI ATCGAT 1 cut(s) 568
BtgI CCRYGG 1 cut(s) 987
BtsIMutI CAGTG 1 cut(s) 830
BveI ACCTGC 1 cut(s) 1061
Cac8I GCNNGC 4 cut(s) 706, 776, 918, 931
CaiI CAGNNNCTG 1 cut(s) 1013
CfoI GCGC 2 cut(s) 693, 774
Cfr10I RCCGGY 1 cut(s) 916
Cfr13I GGNCC 2 cut(s) 492, 922
Cfr9I CCCGGG 1 cut(s) 8
ClaI ATCGAT 1 cut(s) 568
CseI GACGC 1 cut(s) 406
CviAII CATG 5 cut(s) 113, 657, 718, 926, 988
DdeI CTNAG 1 cut(s) 459
DpnI GATC 5 cut(s) 52, 96, 471, 567, 722
DpnII GATC 5 cut(s) 50, 94, 469, 565, 720
EaeI YGGCCR 1 cut(s) 587
Eam1104I CTCTTC 5 cut(s) 41, 163, 185, 359, 885
EarI CTCTTC 5 cut(s) 41, 163, 185, 359, 885
Ecl136II GAGCTC 1 cut(s) 878
Eco130I CCWWGG 3 cut(s) 475, 987, 1164
Eco24I GRGCYC 1 cut(s) 880
Eco31I GGTCTC 1 cut(s) 170
Eco32I GATATC 1 cut(s) 964
Eco47I GGWCC 2 cut(s) 492, 922
Eco53kI GAGCTC 1 cut(s) 878
Eco57I CTGAAG 1 cut(s) 340
Eco81I CCTNAGG 1 cut(s) 459
Eco88I CYCGRG 3 cut(s) 8, 631, 1037
EcoICRI GAGCTC 1 cut(s) 878
EcoRI GAATTC 1 cut(s) 1032
EcoRV GATATC 1 cut(s) 964
EcoT14I CCWWGG 3 cut(s) 475, 987, 1164
EcoT38I GRGCYC 1 cut(s) 880
ErhI CCWWGG 3 cut(s) 475, 987, 1164
FaeI CATG 5 cut(s) 116, 660, 721, 929, 991
FaqI GGGAC 2 cut(s) 825, 1024
FatI CATG 5 cut(s) 112, 656, 717, 925, 987
FauI CCCGC 1 cut(s) 777
FbaI TGATCA 1 cut(s) 720
Fnu4HI GCNGC 6 cut(s) 30, 75, 263, 507, 796, 1131
FriOI GRGCYC 1 cut(s) 880
Fsp4HI GCNGC 6 cut(s) 30, 75, 263, 507, 796, 1131
FspBI CTAG 2 cut(s) 852, 1148
FspI TGCGCA 1 cut(s) 692
GlaI GCGC 2 cut(s) 692, 773
GluI GCNGC 6 cut(s) 30, 75, 263, 507, 796, 1131
GsuI CTGGAG 1 cut(s) 841
HaeIII GGCC 3 cut(s) 337, 589, 1051
HapII CCGG 6 cut(s) 9, 78, 284, 561, 917, 1052
HgaI GACGC 1 cut(s) 406
HhaI GCGC 2 cut(s) 693, 774
Hin1II CATG 5 cut(s) 116, 660, 721, 929, 991
Hin6I GCGC 2 cut(s) 691, 772
HinP1I GCGC 2 cut(s) 691, 772
HinfI GANTC 2 cut(s) 4, 813
HpaII CCGG 6 cut(s) 9, 78, 284, 561, 917, 1052
HphI GGTGA 5 cut(s) 575, 659, 703, 718, 1117
Hpy166II GTNNAC 1 cut(s) 495
Hpy188I TCNGA 4 cut(s) 469, 744, 954, 1086
Hpy188III TCNNGA 5 cut(s) 43, 344, 631, 858, 1037
Hpy8I GTNNAC 1 cut(s) 495
Hpy99I CGWCG 3 cut(s) 63, 151, 250
HpyAV CCTTC 4 cut(s) 8, 202, 289, 635
HpyCH4III ACNGT 3 cut(s) 63, 122, 834
HpyCH4IV ACGT 3 cut(s) 234, 576, 678
HpyCH4V TGCA 4 cut(s) 506, 554, 704, 819
HpyF10VI GCNNNNNNNGC 5 cut(s) 80, 771, 926, 1127, 1153
HpyF3I CTNAG 1 cut(s) 459
HpySE526I ACGT 3 cut(s) 234, 576, 678
Hsp92II CATG 5 cut(s) 116, 660, 721, 929, 991
HspAI GCGC 2 cut(s) 691, 772
KroI GCCGGC 1 cut(s) 916
KroNI GCCGGC 1 cut(s) 918
Ksp22I TGATCA 1 cut(s) 720
Kzo9I GATC 5 cut(s) 50, 94, 469, 565, 720
LguI GCTCTTC 1 cut(s) 885
LmnI GCTCC 3 cut(s) 26, 80, 860
Lsp1109I GCAGC 5 cut(s) 16, 61, 249, 518, 1117
LweI GCATC 2 cut(s) 717, 807
MaeI CTAG 2 cut(s) 852, 1148
MaeII ACGT 3 cut(s) 234, 576, 678
MaeIII GTNAC 3 cut(s) 577, 1073, 1172
MalI GATC 5 cut(s) 52, 96, 471, 567, 722
MboI GATC 5 cut(s) 50, 94, 469, 565, 720
MflI RGATCY 1 cut(s) 469
MhlI GDGCHC 2 cut(s) 638, 880
MluCI AATT 6 cut(s) 169, 316, 442, 526, 940, 1032
MlyI GAGTC 2 cut(s) 13, 807
MmeI TCCRAC 1 cut(s) 217
MroNI GCCGGC 1 cut(s) 916
MseI TTAA 1 cut(s) 674
MslI CAYNNNNRTG 2 cut(s) 716, 806
MspI CCGG 6 cut(s) 9, 78, 284, 561, 917, 1052
MspR9I CCNGG 4 cut(s) 9, 10, 561, 1053
MvnI CGCG 1 cut(s) 772
MwoI GCNNNNNNNGC 5 cut(s) 80, 771, 926, 1127, 1153
NaeI GCCGGC 1 cut(s) 918
NciI CCSGG 4 cut(s) 9, 10, 561, 1053
NcoI CCATGG 1 cut(s) 987
NdeII GATC 5 cut(s) 50, 94, 469, 565, 720
NgoMIV GCCGGC 1 cut(s) 916
NlaIII CATG 5 cut(s) 116, 660, 721, 929, 991
NmeAIII GCCGAG 1 cut(s) 771
NmuCI GTSAC 3 cut(s) 577, 1073, 1172
NsbI TGCGCA 1 cut(s) 692
NspV TTCGAA 1 cut(s) 865
PaeR7I CTCGAG 1 cut(s) 631
PciSI GCTCTTC 1 cut(s) 885
PcsI WCGNNNNNNNCGW 2 cut(s) 143, 871
PdiI GCCGGC 1 cut(s) 918
PkrI GCNGC 6 cut(s) 31, 76, 264, 508, 797, 1132
PleI GAGTC 2 cut(s) 12, 807
PpsI GAGTC 2 cut(s) 12, 807
PsiI TTATAA 1 cut(s) 1142
Psp124BI GAGCTC 1 cut(s) 880
Psp1406I AACGTT 1 cut(s) 234
PspPI GGNCC 2 cut(s) 492, 922
PstNI CAGNNNCTG 1 cut(s) 1013
PsuI RGATCY 1 cut(s) 469
RseI CAYNNNNRTG 2 cut(s) 716, 806
SacI GAGCTC 1 cut(s) 880
SapI GCTCTTC 1 cut(s) 885
SaqAI TTAA 1 cut(s) 674
SatI GCNGC 6 cut(s) 30, 75, 263, 507, 796, 1131
Sau3AI GATC 5 cut(s) 50, 94, 469, 565, 720
Sau96I GGNCC 2 cut(s) 492, 922
SchI GAGTC 2 cut(s) 13, 807
ScrFI CCNGG 4 cut(s) 9, 10, 561, 1053
SduI GDGCHC 2 cut(s) 638, 880
SfaNI GCATC 2 cut(s) 717, 807
Sfr274I CTCGAG 1 cut(s) 631
SfuI TTCGAA 1 cut(s) 865
SinI GGWCC 2 cut(s) 492, 922
SlaI CTCGAG 1 cut(s) 631
SmaI CCCGGG 1 cut(s) 10
SmiMI CAYNNNNRTG 2 cut(s) 716, 806
SmlI CTYRAG 1 cut(s) 631
SmoI CTYRAG 1 cut(s) 631
Sse9I AATT 6 cut(s) 169, 316, 442, 526, 940, 1032
SsiI CCGC 5 cut(s) 536, 770, 795, 920, 992
SspMI CTAG 2 cut(s) 852, 1148
SstI GAGCTC 1 cut(s) 880
StyD4I CCNGG 4 cut(s) 7, 8, 559, 1051
StyI CCWWGG 3 cut(s) 475, 987, 1164
TaaI ACNGT 3 cut(s) 63, 122, 834
TaiI ACGT 3 cut(s) 237, 579, 681
TaqI TCGA 8 cut(s) 248, 345, 568, 632, 865, 874, 1030, 1062
TasI AATT 6 cut(s) 169, 316, 442, 526, 940, 1032
TauI GCSGC 1 cut(s) 798
Tru1I TTAA 1 cut(s) 674
Tru9I TTAA 1 cut(s) 674
TscAI CASTG 1 cut(s) 837
TseFI GTSAC 3 cut(s) 577, 1073, 1172
TseI GCWGC 5 cut(s) 29, 74, 262, 506, 1130
Tsp45I GTSAC 3 cut(s) 577, 1073, 1172
TspDTI ATGAA 7 cut(s) 298, 308, 393, 557, 645, 882, 1082
TspGWI ACGGA 1 cut(s) 356
TspMI CCCGGG 1 cut(s) 8
TspRI CASTG 1 cut(s) 837
VpaK11BI GGWCC 2 cut(s) 492, 922
XapI RAATTY 2 cut(s) 442, 1032
XhoI CTCGAG 1 cut(s) 631
XmaI CCCGGG 1 cut(s) 8
XspI CTAG 2 cut(s) 852, 1148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.