Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0008678

Physical Location & Seq

Genomic Coordinates Reverse (-)

21147239 .. 21149700

Gene Structure 2462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G249700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGAGTCCCATGGAAGGAGGAGCTCTTGCCAAGAAGAGAAAGCCAACAACAACAATGGATCATCAAACCTCCTCCTCCTCGGCATCAGTTGATAATAATTATTTTAATGTTTCTCATAATCATGTCACCGACAACAACAAGAATAAGAAGAAGAAGAAGAAGAAGAGAAACAAGGCCAAACCCAAACGGTACAGCTTGATGTCGTATTGGGAGTTGCCGGAGTACATGAAAGACAATGAGTTCATACTCAATTACTACAGAGCCAATTGGCCTCTCCCTCAAGCTCTCTTTAGCGTTTTCCGTTGGCATAACGAAACTCTCAACGTTTGGACGCATTTGATTGGATTTGTTCTGTTTTTGGGTTTGACTATGGTGAATTTGTTGCGAGTGCCCCAGGTAGCGGATCTCCTCGGCTTTTTTGCCAGGTCCACCCCTATTAGTGCAGTTACAAATGTTTCCCGTAATTTCATTTCGGGGATCATGACAACAAATCTGATTGAATTGAAGCAAATGACATCTCAGGAAATGGAAATTGCAGCAGCTGGTCATGAAATGGGTGGCGTGGCATATTGGCCTTTTTATGTGTTCCTAGGAGGCTCTATGTTCTGCCTTTTCTCGAGCAGCATTTGTCACCTCTTTTCATGTCACTCTCACCCCTTGAACCTCCTGCTGCTGCGCATCGATTATGCCGGCATCACCATGATGATCATCACCTCATTTTTCCCTCCAATTTACTACATCTTCCAATGTGACCCGCGCTGGCAATTCATCTACCTTGGTGGCATCACAATCATGGGGGTTTTCACCATCATAACACTGCTCTCTCCCAAGCTTTCGAGCGGCAAATTTCGCACGTTTCGAGCCTTGCTGTTTGCATCCATGGGGTTGTTTGGGATTGTGCCAGCAGTCCATGCCAGCATTGTGAACTGGGGGAACCCGCGGCGCAACGCCACTCTAGTTTATGAGGCTGCCATGGCATTTTTCTATTTGACAGGGACTGGATTTTATATCACTCGGATTCCAGAGAGATGGAGGCCCGGATGGTTTGACATAGCAGGGCACAGCCATCAGATTTTTCATGTTTTGGTGGTGTTGGGTGCCTTGGCGCATTATGCTGCCATTCTTGTAATGCTAGACTGGCGAAGCACCTTTGGCTGTGACAATAACAACACTACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009743 GO:0009744 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0010033 GO:0010646 GO:0010648 GO:0023051 GO:0023057 GO:0034285 GO:0042221 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:1901419 GO:1901420 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

ko04152 ko04211 ko04920 ko04932 map04152 map04211 map04920 map04932

Pfam Domains

Protein Families

HlyIII

Protein Analysis

393

Amino Acids

44.66

Weight (kDa)

9.61

Isoelectric Point (pI)

47.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20270
fragaria_vesca	FvH4_1g02500 FvH4_1g02500 FvH4_1g02500
malus_domestica	MD02G1022400.v1.1 MD15G1165000.v1.1
prunus_persica	Prupe.7G249700_v2.0.a1
pyrus_communis	pycom02g01930 pycom15g14790 pycom15g39150
rosa_chinensis	RchiOBHm_Chr2g0087501
rosa_laevigata	RLG00000015874
rosa_multiflora	Rmu_co8128214.1_g000001 Rmu_sc0002299.1_g000010
rosa_roxburghii	Rroxscaffold_2G00153500
rosa_rugosa	Rorug01G0476100 Rorug01G0476200 Rorug01G0476300
rosa_samantha	Rh2AG029500 Rh2BG029600 Rh2CG029600 Rh2DG029500
rosa_wichuraiana	Rw2G002340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	677
AccB1I	GGYRCC	1 cut(s)	1097
AccBSI	CCGCTC	1 cut(s)	840
AccII	CGCG	2 cut(s)	757, 940
AciI	CCGC	5 cut(s)	401, 755, 840, 938, 940
AclI	AACGTT	1 cut(s)	324
AclWI	GGATC	3 cut(s)	66, 411, 485
AcsI	RAATTY	2 cut(s)	376, 845
AdeI	CACNNNGTG	1 cut(s)	1176
AfaI	GTAC	2 cut(s)	191, 224
AfiI	CCNNNNNNNGG	2 cut(s)	14, 400
AgsI	TTSAA	3 cut(s)	500, 505, 661
AjnI	CCWGG	2 cut(s)	393, 422
AluBI	AGCT	5 cut(s)	23, 195, 284, 542, 832
AluI	AGCT	5 cut(s)	23, 195, 284, 542, 832
Alw21I	GWGCWC	1 cut(s)	25
AlwI	GGATC	3 cut(s)	66, 411, 485
AlwNI	CAGNNNCTG	2 cut(s)	542, 998
Ama87I	CYCGRG	1 cut(s)	616
AoxI	GGCC	4 cut(s)	174, 269, 572, 1034
ApeKI	GCWGC	7 cut(s)	536, 539, 621, 670, 673, 968, 1115
ApoI	RAATTY	2 cut(s)	376, 845
AspA2I	CCTAGG	1 cut(s)	589
AspLEI	GCGC	4 cut(s)	678, 759, 945, 1108
AspS9I	GGNCC	2 cut(s)	426, 1035
AsuC2I	CCSGG	1 cut(s)	1038
AsuHPI	GGTGA	7 cut(s)	118, 385, 623, 644, 688, 703, 796
AvaI	CYCGRG	1 cut(s)	616
AvaII	GGWCC	1 cut(s)	426
AvrII	CCTAGG	1 cut(s)	589
BaeGI	GKGCMC	2 cut(s)	393, 1062
BanI	GGYRCC	1 cut(s)	1097
BanII	GRGCYC	1 cut(s)	25
Bbv12I	GWGCWC	1 cut(s)	25
BbvI	GCAGC	7 cut(s)	548, 551, 633, 657, 660, 955, 1102
BccI	CCATC	4 cut(s)	815, 1023, 1035, 1074
BciT130I	CCWGG	2 cut(s)	395, 424
BclI	TGATCA	1 cut(s)	705
BcnI	CCSGG	1 cut(s)	1038
BfaI	CTAG	3 cut(s)	590, 956, 1133
BfmI	CTRYAG	1 cut(s)	256
BisI	GCNGC	9 cut(s)	537, 540, 622, 671, 674, 841, 941, 969, 1116
BlnI	CCTAGG	1 cut(s)	589
BlsI	GCNGC	9 cut(s)	538, 541, 623, 672, 675, 842, 942, 970, 1117
Bme1390I	CCNGG	3 cut(s)	395, 424, 1038
Bme18I	GGWCC	1 cut(s)	426
BmeT110I	CYCGRG	1 cut(s)	616
BmgT120I	GGNCC	2 cut(s)	426, 1035
BmiI	GGNNCC	2 cut(s)	935, 1099
BmrFI	CCNGG	3 cut(s)	395, 424, 1038
BmrI	ACTGGG	1 cut(s)	937
BmsI	GCATC	5 cut(s)	92, 687, 702, 792, 884
BmuI	ACTGGG	1 cut(s)	937
BpuEI	CTTGAG	1 cut(s)	264
BpuMI	CCSGG	1 cut(s)	1038
Bsa29I	ATCGAT	1 cut(s)	681
BsaAI	YACGTR	1 cut(s)	1176
BsaBI	GATNNNNATC	1 cut(s)	707
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 400
Bse118I	RCCGGY	1 cut(s)	689
Bse1I	ACTGG	3 cut(s)	932, 1003, 1142
Bse8I	GATNNNNATC	1 cut(s)	707
BseBI	CCWGG	2 cut(s)	395, 424
BseCI	ATCGAT	1 cut(s)	681
BseGI	GGATG	2 cut(s)	875, 1046
BseJI	GATNNNNATC	1 cut(s)	707
BseLI	CCNNNNNNNGG	2 cut(s)	14, 400
BseMII	CTCAG	1 cut(s)	533
BseNI	ACTGG	3 cut(s)	932, 1003, 1142
BseRI	GAGGAG	5 cut(s)	33, 61, 64, 67, 398
BseSI	GKGCMC	2 cut(s)	393, 1062
BseXI	GCAGC	7 cut(s)	548, 551, 633, 657, 660, 955, 1102
BsgI	GTGCAG	1 cut(s)	462
Bsh1236I	CGCG	2 cut(s)	757, 940
BshFI	GGCC	4 cut(s)	176, 271, 574, 1036
BshNI	GGYRCC	1 cut(s)	1097
BshVI	ATCGAT	1 cut(s)	681
BsiHKAI	GWGCWC	1 cut(s)	25
BsiHKCI	CYCGRG	1 cut(s)	616
BsiSI	CCGG	3 cut(s)	218, 690, 1038
BslFI	GGGAC	1 cut(s)	1009
BslI	CCNNNNNNNGG	2 cut(s)	14, 400
BsmFI	GGGAC	1 cut(s)	1009
BsnI	GGCC	4 cut(s)	176, 271, 574, 1036
BsoBI	CYCGRG	1 cut(s)	616
Bsp1286I	GDGCHC	3 cut(s)	25, 393, 1062
Bsp143I	GATC	4 cut(s)	58, 403, 477, 705
Bsp19I	CCATGG	3 cut(s)	9, 879, 972
BspACI	CCGC	5 cut(s)	401, 755, 840, 938, 940
BspANI	GGCC	4 cut(s)	176, 271, 574, 1036
BspCNI	CTCAG	1 cut(s)	532
BspDI	ATCGAT	1 cut(s)	681
BspFNI	CGCG	2 cut(s)	757, 940
BspHI	TCATGA	2 cut(s)	480, 547
BspLI	GGNNCC	2 cut(s)	935, 1099
BspPI	GGATC	3 cut(s)	66, 411, 485
BspT107I	GGYRCC	1 cut(s)	1097
BsrBI	CCGCTC	1 cut(s)	840
BsrFI	RCCGGY	1 cut(s)	689
BsrI	ACTGG	3 cut(s)	932, 1003, 1142
BssAI	RCCGGY	1 cut(s)	689
BssMI	GATC	4 cut(s)	58, 403, 477, 705
BssT1I	CCWWGG	6 cut(s)	9, 589, 775, 879, 972, 1101
Bst2UI	CCWGG	2 cut(s)	395, 424
Bst4CI	ACNGT	1 cut(s)	189
Bst6I	CTCTTC	2 cut(s)	29, 158
BstAPI	GCANNNNNTGC	1 cut(s)	911
BstBAI	YACGTR	1 cut(s)	1176
BstC8I	GCNNGC	4 cut(s)	691, 761, 903, 916
BstDEI	CTNAG	1 cut(s)	519
BstDSI	CCRYGG	4 cut(s)	9, 879, 938, 972
BstF5I	GGATG	2 cut(s)	875, 1046
BstFNI	CGCG	2 cut(s)	757, 940
BstHHI	GCGC	4 cut(s)	678, 759, 945, 1108
BstKTI	GATC	4 cut(s)	61, 406, 480, 708
BstMBI	GATC	4 cut(s)	58, 403, 477, 705
BstMWI	GCNNNNNNNGC	6 cut(s)	849, 911, 974, 1112, 1138, 1152
BstNI	CCWGG	2 cut(s)	395, 424
BstSCI	CCNGG	3 cut(s)	393, 422, 1036
BstSFI	CTRYAG	1 cut(s)	256
BstSLI	GKGCMC	2 cut(s)	393, 1062
BstUI	CGCG	2 cut(s)	757, 940
BstV1I	GCAGC	7 cut(s)	548, 551, 633, 657, 660, 955, 1102
BstX2I	RGATCY	1 cut(s)	403
BstXI	CCANNNNNNTGG	1 cut(s)	1029
BstYI	RGATCY	1 cut(s)	403
Bsu15I	ATCGAT	1 cut(s)	681
BsuRI	GGCC	4 cut(s)	176, 271, 574, 1036
BsuTUI	ATCGAT	1 cut(s)	681
BtgI	CCRYGG	4 cut(s)	9, 879, 938, 972
BtsCI	GGATG	2 cut(s)	875, 1046
BtsI	GCAGTG	1 cut(s)	815
BtsIMutI	CAGTG	1 cut(s)	815
Cac8I	GCNNGC	4 cut(s)	691, 761, 903, 916
CaiI	CAGNNNCTG	2 cut(s)	542, 998
CciI	TCATGA	2 cut(s)	480, 547
CfoI	GCGC	4 cut(s)	678, 759, 945, 1108
Cfr10I	RCCGGY	1 cut(s)	689
Cfr13I	GGNCC	2 cut(s)	426, 1035
Cfr42I	CCGCGG	1 cut(s)	941
ClaI	ATCGAT	1 cut(s)	681
CseI	GACGC	1 cut(s)	340
Csp6I	GTAC	2 cut(s)	190, 223
CviQI	GTAC	2 cut(s)	190, 223
DdeI	CTNAG	1 cut(s)	519
DpnI	GATC	4 cut(s)	60, 405, 479, 707
DpnII	GATC	4 cut(s)	58, 403, 477, 705
DraIII	CACNNNGTG	1 cut(s)	1176
Eam1104I	CTCTTC	2 cut(s)	29, 158
EarI	CTCTTC	2 cut(s)	29, 158
Ecl136II	GAGCTC	1 cut(s)	23
Eco130I	CCWWGG	6 cut(s)	9, 589, 775, 879, 972, 1101
Eco24I	GRGCYC	1 cut(s)	25
Eco47I	GGWCC	1 cut(s)	426
Eco53kI	GAGCTC	1 cut(s)	23
Eco88I	CYCGRG	1 cut(s)	616
EcoICRI	GAGCTC	1 cut(s)	23
EcoRII	CCWGG	2 cut(s)	393, 422
EcoT14I	CCWWGG	6 cut(s)	9, 589, 775, 879, 972, 1101
EcoT38I	GRGCYC	1 cut(s)	25
ErhI	CCWWGG	6 cut(s)	9, 589, 775, 879, 972, 1101
FaqI	GGGAC	1 cut(s)	1009
FauI	CCCGC	2 cut(s)	762, 945
FbaI	TGATCA	1 cut(s)	705
Fnu4HI	GCNGC	9 cut(s)	537, 540, 622, 671, 674, 841, 941, 969, 1116
FokI	GGATG	2 cut(s)	862, 1053
FriOI	GRGCYC	1 cut(s)	25
Fsp4HI	GCNGC	9 cut(s)	537, 540, 622, 671, 674, 841, 941, 969, 1116
FspBI	CTAG	3 cut(s)	590, 956, 1133
FspI	TGCGCA	1 cut(s)	677
GlaI	GCGC	4 cut(s)	677, 758, 944, 1107
GluI	GCNGC	9 cut(s)	537, 540, 622, 671, 674, 841, 941, 969, 1116
HaeIII	GGCC	4 cut(s)	176, 271, 574, 1036
HapII	CCGG	3 cut(s)	218, 690, 1038
HgaI	GACGC	1 cut(s)	340
HhaI	GCGC	4 cut(s)	678, 759, 945, 1108
Hin6I	GCGC	4 cut(s)	676, 757, 943, 1106
HinP1I	GCGC	4 cut(s)	676, 757, 943, 1106
HindIII	AAGCTT	1 cut(s)	830
HinfI	GANTC	2 cut(s)	4, 1018
HpaII	CCGG	3 cut(s)	218, 690, 1038
HphI	GGTGA	7 cut(s)	118, 385, 623, 644, 688, 703, 796
Hpy166II	GTNNAC	2 cut(s)	429, 925
Hpy188I	TCNGA	3 cut(s)	495, 1017, 1071
Hpy188III	TCNNGA	5 cut(s)	481, 521, 548, 616, 1022
Hpy8I	GTNNAC	2 cut(s)	429, 925
HpyAV	CCTTC	1 cut(s)	8
HpyCH4III	ACNGT	1 cut(s)	189
HpyCH4IV	ACGT	3 cut(s)	324, 854, 1175
HpyCH4V	TGCA	3 cut(s)	443, 536, 875
HpyF10VI	GCNNNNNNNGC	6 cut(s)	849, 911, 974, 1112, 1138, 1152
HpyF3I	CTNAG	1 cut(s)	519
HpySE526I	ACGT	3 cut(s)	324, 854, 1175
HspAI	GCGC	4 cut(s)	676, 757, 943, 1106
KroI	GCCGGC	1 cut(s)	689
KroNI	GCCGGC	1 cut(s)	691
Ksp22I	TGATCA	1 cut(s)	705
KspI	CCGCGG	1 cut(s)	941
Kzo9I	GATC	4 cut(s)	58, 403, 477, 705
LmnI	GCTCC	1 cut(s)	20
Lsp1109I	GCAGC	7 cut(s)	548, 551, 633, 657, 660, 955, 1102
LweI	GCATC	5 cut(s)	92, 687, 702, 792, 884
MaeI	CTAG	3 cut(s)	590, 956, 1133
MaeII	ACGT	3 cut(s)	324, 854, 1175
MaeIII	GTNAC	6 cut(s)	124, 445, 629, 644, 749, 1157
MalI	GATC	4 cut(s)	60, 405, 479, 707
MbiI	CCGCTC	1 cut(s)	840
MboI	GATC	4 cut(s)	58, 403, 477, 705
MboII	GAAGA	8 cut(s)	46, 160, 163, 166, 169, 172, 175, 733
MfeI	CAATTG	1 cut(s)	265
MflI	RGATCY	1 cut(s)	403
MhlI	GDGCHC	3 cut(s)	25, 393, 1062
MlyI	GAGTC	1 cut(s)	13
MroNI	GCCGGC	1 cut(s)	689
MseI	TTAA	1 cut(s)	105
MslI	CAYNNNNRTG	4 cut(s)	120, 698, 701, 791
MspA1I	CMGCKG	2 cut(s)	542, 940
MspI	CCGG	3 cut(s)	218, 690, 1038
MspR9I	CCNGG	3 cut(s)	395, 424, 1038
MunI	CAATTG	1 cut(s)	265
MvaI	CCWGG	2 cut(s)	395, 424
MvnI	CGCG	2 cut(s)	757, 940
MwoI	GCNNNNNNNGC	6 cut(s)	849, 911, 974, 1112, 1138, 1152
NaeI	GCCGGC	1 cut(s)	691
NciI	CCSGG	1 cut(s)	1038
NcoI	CCATGG	3 cut(s)	9, 879, 972
NdeII	GATC	4 cut(s)	58, 403, 477, 705
NgoMIV	GCCGGC	1 cut(s)	689
NlaIV	GGNNCC	2 cut(s)	935, 1099
NmeAIII	GCCGAG	2 cut(s)	59, 390
NmuCI	GTSAC	5 cut(s)	124, 629, 644, 749, 1157
NsbI	TGCGCA	1 cut(s)	677
PaeR7I	CTCGAG	1 cut(s)	616
PagI	TCATGA	2 cut(s)	480, 547
PcsI	WCGNNNNNNNCGW	1 cut(s)	856
PdiI	GCCGGC	1 cut(s)	691
PfeI	GAWTC	1 cut(s)	1018
PkrI	GCNGC	9 cut(s)	538, 541, 623, 672, 675, 842, 942, 970, 1117
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Ppu21I	YACGTR	1 cut(s)	1176
Psp124BI	GAGCTC	1 cut(s)	25
Psp1406I	AACGTT	1 cut(s)	324
Psp6I	CCWGG	2 cut(s)	393, 422
PspGI	CCWGG	2 cut(s)	393, 422
PspN4I	GGNNCC	2 cut(s)	935, 1099
PspPI	GGNCC	2 cut(s)	426, 1035
PstNI	CAGNNNCTG	2 cut(s)	542, 998
PsuI	RGATCY	1 cut(s)	403
PvuII	CAGCTG	1 cut(s)	542
RsaI	GTAC	2 cut(s)	191, 224
RsaNI	GTAC	2 cut(s)	190, 223
RseI	CAYNNNNRTG	4 cut(s)	120, 698, 701, 791
SacI	GAGCTC	1 cut(s)	25
SacII	CCGCGG	1 cut(s)	941
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	9 cut(s)	537, 540, 622, 671, 674, 841, 941, 969, 1116
Sau3AI	GATC	4 cut(s)	58, 403, 477, 705
Sau96I	GGNCC	2 cut(s)	426, 1035
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	3 cut(s)	395, 424, 1038
SduI	GDGCHC	3 cut(s)	25, 393, 1062
SfaNI	GCATC	5 cut(s)	92, 687, 702, 792, 884
SfcI	CTRYAG	1 cut(s)	256
Sfr274I	CTCGAG	1 cut(s)	616
Sfr303I	CCGCGG	1 cut(s)	941
SgrBI	CCGCGG	1 cut(s)	941
SinI	GGWCC	1 cut(s)	426
SlaI	CTCGAG	1 cut(s)	616
SmiMI	CAYNNNNRTG	4 cut(s)	120, 698, 701, 791
SmlI	CTYRAG	2 cut(s)	279, 616
SmoI	CTYRAG	2 cut(s)	279, 616
SsiI	CCGC	5 cut(s)	401, 755, 840, 938, 940
SspMI	CTAG	3 cut(s)	590, 956, 1133
SstI	GAGCTC	1 cut(s)	25
StyD4I	CCNGG	3 cut(s)	393, 422, 1036
StyI	CCWWGG	6 cut(s)	9, 589, 775, 879, 972, 1101
TaaI	ACNGT	1 cut(s)	189
TaiI	ACGT	3 cut(s)	327, 857, 1178
TaqI	TCGA	4 cut(s)	617, 681, 836, 859
TatI	WGTACW	1 cut(s)	222
TauI	GCSGC	2 cut(s)	843, 943
TfiI	GAWTC	1 cut(s)	1018
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TscAI	CASTG	1 cut(s)	822
TseFI	GTSAC	5 cut(s)	124, 629, 644, 749, 1157
TseI	GCWGC	7 cut(s)	536, 539, 621, 670, 673, 968, 1115
Tsp45I	GTSAC	5 cut(s)	124, 629, 644, 749, 1157
TspDTI	ATGAA	7 cut(s)	232, 242, 457, 564, 630, 757, 1067
TspGWI	ACGGA	1 cut(s)	290
TspRI	CASTG	1 cut(s)	822
VpaK11BI	GGWCC	1 cut(s)	426
XapI	RAATTY	2 cut(s)	376, 845
XhoI	CTCGAG	1 cut(s)	616
XmaJI	CCTAGG	1 cut(s)	589
XspI	CTAG	3 cut(s)	590, 956, 1133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.