Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008678

Physical Location & Seq

Genomic Coordinates Reverse (-)

56596255 .. 56599424

Gene Structure 3170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0476300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGCTGTTGCTGAGAATGCACCGAGCTTCGATAACTCATCGGAGTCCAATGCTCAGAGCGATCTCGAAAACCCACCAAAACCCAAAATGGACTCGGCTGCTGTGGTGAGTGTGGACCCCAATTTGCAGTCCAATGGTGGTGGTGGTGATGATCAGAACAATTCTGAGCTGAAGAGCCAGGAGGGTTTGTCAGTCCCCAACCACAAGGCTCAAACGGGCCAGATGCAAAATGGGTTCGAGTCCAATGGGGTGGCTGCTGATGACCATCAGATGGTGAAGGCTGGTGGGTATGGGACTGATCAGAGCTCCAATGGGGATGAGAATTTCAAGAGGGATATGAGGGATTTGGAAGAGTTGTTGTCCAAGTTGAATCCCATGGCTCAGGAATTCATACCTCTAAGCCTTGCCAACAACCAAGGGTTTGCTCTTCCTGGTGGATTTGGCTACACTAACAATCTGTTGCTGCAGGCCAATTCCGGCAATGGGAATGGATTTATGGGCAAAAGGAAGAAGAATGGCTATAGTAATCAAGCCAGGAGAAGGAACTATTACAAGCTGAGTTTGGCACAGCGAGAGGAGATGATTAGGAGGACTGTGTATGTTTCTGACATTGACCAACAGGTTACTGAAGAGAACCTGGCTGCTCTCTTTATTAATTGCGGACAGGTTGTAGACTGTCGTGTATGTGGTGATCCTAATTCTGTTCTTCGATTTGCTTTTATTGAGTTTACAGATGAAGAAGGTGCAATGGCTGCTTTGAGTCTGTCAGGAACCATGCTTGGCTACTACCCTGTAAGAGTGCTGCCTTCCAAAACTGCAATTGCACCTGTTAACCCAACATTTTTGCCCAGGTCAGATGATGAACGTGAAATGTGCTCAAGAACTATTTATTGTACCAATATTGACAAGAAGGTTACTCAAGCTGATGTCAAACTGTTTTTTGAATCACTTTGTGGAGAGGTTCAACGCCTGAGGCTCCTTGGAGACTATCATCATTCCACTCGTATTTGTTTTGTTGAGTTTACAGTGGCTGAAAGTGCAATTGCAGCTCTTAACTGTAGCGGTGTAGTTTTGGGATCACTGCCTATAAGGGTCAGCCCGTCAAAGACACCTGTCCGCCCCCGTGCTCCTCCTCGCTCTCCATTGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009743 GO:0009744 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0010033 GO:0010646 GO:0010648 GO:0023051 GO:0023057 GO:0034285 GO:0042221 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:1901419 GO:1901420 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

ko04152 ko04211 ko04920 ko04932 map04152 map04211 map04920 map04932

Pfam Domains

Protein Families

HlyIII

Protein Analysis

383

Amino Acids

41.81

Weight (kDa)

5.33

Isoelectric Point (pI)

43.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	199 - 261	8.5e-12	RNA recognition motif
RRM_1	PF00076	296 - 363	6.6e-09	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20270
fragaria_vesca	FvH4_1g02500 FvH4_1g02500 FvH4_1g02500
malus_domestica	MD02G1022400.v1.1 MD15G1165000.v1.1
prunus_persica	Prupe.7G249700_v2.0.a1
pyrus_communis	pycom02g01930 pycom15g14790 pycom15g39150
rosa_chinensis	RchiOBHm_Chr2g0087501
rosa_laevigata	RLG00000015874
rosa_multiflora	Rmu_co8128214.1_g000001 Rmu_sc0002299.1_g000010
rosa_roxburghii	Rroxscaffold_2G00153500
rosa_rugosa	Rorug01G0476100 Rorug01G0476200 Rorug01G0476300
rosa_samantha	Rh2AG029500 Rh2BG029600 Rh2CG029600 Rh2DG029500
rosa_wichuraiana	Rw2G002340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	271
AccI	GTMKAC	1 cut(s)	672
AciI	CCGC	3 cut(s)	660, 1062, 1117
AclWI	GGATC	2 cut(s)	686, 1084
AcsI	RAATTY	2 cut(s)	322, 386
AcuI	CTGAAG	2 cut(s)	191, 648
AdeI	CACNNNGTG	1 cut(s)	953
AfaI	GTAC	1 cut(s)	895
AfiI	CCNNNNNNNGG	3 cut(s)	271, 483, 540
AgsI	TTSAA	4 cut(s)	328, 370, 944, 965
AjnI	CCWGG	5 cut(s)	177, 430, 533, 636, 848
AluBI	AGCT	6 cut(s)	27, 169, 306, 556, 923, 1049
AluI	AGCT	6 cut(s)	27, 169, 306, 556, 923, 1049
Alw21I	GWGCWC	3 cut(s)	308, 878, 1129
Alw26I	GTCTC	1 cut(s)	978
AlwI	GGATC	2 cut(s)	686, 1084
AlwNI	CAGNNNCTG	1 cut(s)	1031
AoxI	GGCC	2 cut(s)	217, 468
ApeKI	GCWGC	7 cut(s)	98, 254, 463, 641, 752, 802, 1046
ApoI	RAATTY	2 cut(s)	322, 386
AseI	ATTAAT	1 cut(s)	654
AspS9I	GGNCC	2 cut(s)	115, 217
AsuHPI	GGTGA	4 cut(s)	118, 158, 286, 701
AvaII	GGWCC	1 cut(s)	115
AxyI	CCTNAGG	1 cut(s)	971
BanII	GRGCYC	1 cut(s)	308
Bbv12I	GWGCWC	3 cut(s)	308, 878, 1129
BbvI	GCAGC	7 cut(s)	85, 241, 450, 628, 739, 789, 1058
BccI	CCATC	2 cut(s)	265, 273
BciT130I	CCWGG	5 cut(s)	179, 432, 535, 638, 850
BclI	TGATCA	2 cut(s)	151, 298
BcoDI	GTCTC	1 cut(s)	978
BfmI	CTRYAG	3 cut(s)	464, 520, 1057
BisI	GCNGC	7 cut(s)	99, 255, 464, 642, 753, 803, 1047
BlsI	GCNGC	7 cut(s)	100, 256, 465, 643, 754, 804, 1048
Bme1390I	CCNGG	5 cut(s)	179, 432, 535, 638, 850
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	2 cut(s)	115, 217
BmiI	GGNNCC	3 cut(s)	117, 772, 977
BmrFI	CCNGG	5 cut(s)	179, 432, 535, 638, 850
BmsI	GCATC	1 cut(s)	213
BoxI	GACNNNNGTC	1 cut(s)	1112
Bpu10I	CCTNAGC	1 cut(s)	381
BpuEI	CTTGAG	2 cut(s)	862, 903
BsaBI	GATNNNNATC	1 cut(s)	264
BsaJI	CCNNGG	4 cut(s)	375, 415, 848, 979
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bsc4I	CCNNNNNNNGG	3 cut(s)	271, 483, 540
Bse21I	CCTNAGG	1 cut(s)	971
Bse3DI	GCAATG	3 cut(s)	487, 753, 1142
Bse8I	GATNNNNATC	1 cut(s)	264
BseBI	CCWGG	5 cut(s)	179, 432, 535, 638, 850
BseDI	CCNNGG	4 cut(s)	375, 415, 848, 979
BseGI	GGATG	1 cut(s)	322
BseJI	GATNNNNATC	1 cut(s)	264
BseLI	CCNNNNNNNGG	3 cut(s)	271, 483, 540
BseMI	GCAATG	3 cut(s)	487, 753, 1142
BseMII	CTCAG	5 cut(s)	68, 156, 395, 548, 962
BseRI	GAGGAG	3 cut(s)	590, 1119, 1122
BseXI	GCAGC	7 cut(s)	85, 241, 450, 628, 739, 789, 1058
BshFI	GGCC	2 cut(s)	219, 470
BsiHKAI	GWGCWC	3 cut(s)	308, 878, 1129
BsiSI	CCGG	1 cut(s)	477
BslFI	GGGAC	2 cut(s)	179, 307
BslI	CCNNNNNNNGG	3 cut(s)	271, 483, 540
BsmAI	GTCTC	1 cut(s)	978
BsmFI	GGGAC	2 cut(s)	179, 307
BsmI	GAATGC	1 cut(s)	22
BsnI	GGCC	2 cut(s)	219, 470
Bsp1286I	GDGCHC	3 cut(s)	308, 878, 1129
Bsp143I	GATC	5 cut(s)	61, 151, 298, 691, 1076
Bsp19I	CCATGG	1 cut(s)	375
BspACI	CCGC	3 cut(s)	660, 1062, 1117
BspANI	GGCC	2 cut(s)	219, 470
BspCNI	CTCAG	6 cut(s)	4, 67, 157, 394, 549, 963
BspLI	GGNNCC	3 cut(s)	117, 772, 977
BspMAI	CTGCAG	1 cut(s)	468
BspPI	GGATC	2 cut(s)	686, 1084
BspQI	GCTCTTC	2 cut(s)	167, 432
BsrDI	GCAATG	3 cut(s)	487, 753, 1142
BssECI	CCNNGG	4 cut(s)	375, 415, 848, 979
BssMI	GATC	5 cut(s)	61, 151, 298, 691, 1076
BssT1I	CCWWGG	3 cut(s)	375, 415, 979
Bst2UI	CCWGG	5 cut(s)	179, 432, 535, 638, 850
Bst4CI	ACNGT	5 cut(s)	595, 677, 936, 1027, 1058
Bst6I	CTCTTC	4 cut(s)	167, 345, 432, 624
BstAPI	GCANNNNNTGC	1 cut(s)	752
BstC8I	GCNNGC	1 cut(s)	468
BstDEI	CTNAG	7 cut(s)	12, 54, 165, 381, 398, 557, 971
BstDSI	CCRYGG	1 cut(s)	375
BstF5I	GGATG	1 cut(s)	322
BstKTI	GATC	5 cut(s)	64, 154, 301, 694, 1079
BstMAI	GTCTC	1 cut(s)	978
BstMBI	GATC	5 cut(s)	61, 151, 298, 691, 1076
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 752, 1037, 1046
BstNI	CCWGG	5 cut(s)	179, 432, 535, 638, 850
BstPAI	GACNNNNGTC	1 cut(s)	1112
BstSCI	CCNGG	5 cut(s)	177, 430, 533, 636, 848
BstSFI	CTRYAG	3 cut(s)	464, 520, 1057
BstV1I	GCAGC	7 cut(s)	85, 241, 450, 628, 739, 789, 1058
BstXI	CCANNNNNNTGG	1 cut(s)	250
Bsu36I	CCTNAGG	1 cut(s)	971
BsuRI	GGCC	2 cut(s)	219, 470
BtgI	CCRYGG	1 cut(s)	375
BtsCI	GGATG	1 cut(s)	322
BtsI	GCAGTG	1 cut(s)	1079
BtsIMutI	CAGTG	2 cut(s)	1032, 1079
Cac8I	GCNNGC	1 cut(s)	468
CaiI	CAGNNNCTG	1 cut(s)	1031
Cfr13I	GGNCC	2 cut(s)	115, 217
Csp6I	GTAC	1 cut(s)	894
CspCI	CAANNNNNGTGG	2 cut(s)	121, 156
CviAII	CATG	2 cut(s)	376, 775
CviQI	GTAC	1 cut(s)	894
DdeI	CTNAG	7 cut(s)	12, 54, 165, 381, 398, 557, 971
DpnI	GATC	5 cut(s)	63, 153, 300, 693, 1078
DpnII	GATC	5 cut(s)	61, 151, 298, 691, 1076
DraIII	CACNNNGTG	1 cut(s)	953
Eam1104I	CTCTTC	4 cut(s)	167, 345, 432, 624
EarI	CTCTTC	4 cut(s)	167, 345, 432, 624
EciI	GGCGGA	1 cut(s)	1106
Ecl136II	GAGCTC	1 cut(s)	306
Eco130I	CCWWGG	3 cut(s)	375, 415, 979
Eco24I	GRGCYC	1 cut(s)	308
Eco47I	GGWCC	1 cut(s)	115
Eco53kI	GAGCTC	1 cut(s)	306
Eco57I	CTGAAG	2 cut(s)	191, 648
Eco81I	CCTNAGG	1 cut(s)	971
EcoICRI	GAGCTC	1 cut(s)	306
EcoRI	GAATTC	1 cut(s)	386
EcoRII	CCWGG	5 cut(s)	177, 430, 533, 636, 848
EcoT14I	CCWWGG	3 cut(s)	375, 415, 979
EcoT38I	GRGCYC	1 cut(s)	308
ErhI	CCWWGG	3 cut(s)	375, 415, 979
FaeI	CATG	2 cut(s)	379, 778
FaqI	GGGAC	2 cut(s)	179, 307
FatI	CATG	2 cut(s)	375, 774
FbaI	TGATCA	2 cut(s)	151, 298
FblI	GTMKAC	1 cut(s)	672
Fnu4HI	GCNGC	7 cut(s)	99, 255, 464, 642, 753, 803, 1047
FokI	GGATG	1 cut(s)	329
FriOI	GRGCYC	1 cut(s)	308
Fsp4HI	GCNGC	7 cut(s)	99, 255, 464, 642, 753, 803, 1047
GluI	GCNGC	7 cut(s)	99, 255, 464, 642, 753, 803, 1047
HaeIII	GGCC	2 cut(s)	219, 470
HapII	CCGG	1 cut(s)	477
Hin1II	CATG	2 cut(s)	379, 778
HincII	GTYRAC	1 cut(s)	832
HindII	GTYRAC	1 cut(s)	832
HinfI	GANTC	6 cut(s)	44, 92, 239, 370, 760, 944
HpaI	GTTAAC	1 cut(s)	832
HpaII	CCGG	1 cut(s)	477
HphI	GGTGA	4 cut(s)	118, 158, 286, 701
Hpy166II	GTNNAC	5 cut(s)	115, 673, 729, 832, 1023
Hpy188I	TCNGA	8 cut(s)	43, 57, 156, 166, 270, 303, 607, 856
Hpy188III	TCNNGA	5 cut(s)	65, 328, 383, 768, 879
Hpy8I	GTNNAC	5 cut(s)	115, 673, 729, 832, 1023
HpyAV	CCTTC	5 cut(s)	271, 534, 734, 816, 904
HpyCH4III	ACNGT	5 cut(s)	595, 677, 936, 1027, 1058
HpyCH4IV	ACGT	1 cut(s)	865
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 752, 1037, 1046
HpyF3I	CTNAG	7 cut(s)	12, 54, 165, 381, 398, 557, 971
HpySE526I	ACGT	1 cut(s)	865
Hsp92II	CATG	2 cut(s)	379, 778
Ksp22I	TGATCA	2 cut(s)	151, 298
KspAI	GTTAAC	1 cut(s)	832
Kzo9I	GATC	5 cut(s)	61, 151, 298, 691, 1076
LguI	GCTCTTC	2 cut(s)	167, 432
LmnI	GCTCC	3 cut(s)	311, 981, 1132
Lsp1109I	GCAGC	7 cut(s)	85, 241, 450, 628, 739, 789, 1058
LweI	GCATC	1 cut(s)	213
MaeII	ACGT	1 cut(s)	865
MaeIII	GTNAC	2 cut(s)	622, 913
MalI	GATC	5 cut(s)	63, 153, 300, 693, 1078
MboI	GATC	5 cut(s)	61, 151, 298, 691, 1076
MboII	GAAGA	8 cut(s)	184, 362, 419, 520, 523, 641, 698, 749
MfeI	CAATTG	2 cut(s)	819, 1041
MhlI	GDGCHC	3 cut(s)	308, 878, 1129
MluCI	AATT	9 cut(s)	121, 160, 322, 386, 472, 655, 697, 819, 1041
MlyI	GAGTC	4 cut(s)	53, 86, 248, 769
MseI	TTAA	3 cut(s)	654, 831, 1053
MspI	CCGG	1 cut(s)	477
MspR9I	CCNGG	5 cut(s)	179, 432, 535, 638, 850
MunI	CAATTG	2 cut(s)	819, 1041
Mva1269I	GAATGC	1 cut(s)	22
MvaI	CCWGG	5 cut(s)	179, 432, 535, 638, 850
MwoI	GCNNNNNNNGC	4 cut(s)	17, 752, 1037, 1046
NcoI	CCATGG	1 cut(s)	375
NdeII	GATC	5 cut(s)	61, 151, 298, 691, 1076
NlaIII	CATG	2 cut(s)	379, 778
NlaIV	GGNNCC	3 cut(s)	117, 772, 977
NmeAIII	GCCGAG	1 cut(s)	74
PciSI	GCTCTTC	2 cut(s)	167, 432
PctI	GAATGC	1 cut(s)	22
PfeI	GAWTC	2 cut(s)	370, 944
PflMI	CCANNNNNTGG	1 cut(s)	271
PkrI	GCNGC	7 cut(s)	100, 256, 465, 643, 754, 804, 1048
PleI	GAGTC	4 cut(s)	52, 86, 247, 768
PpsI	GAGTC	4 cut(s)	52, 86, 247, 768
PshAI	GACNNNNGTC	1 cut(s)	1112
PshBI	ATTAAT	1 cut(s)	654
Psp124BI	GAGCTC	1 cut(s)	308
Psp6I	CCWGG	5 cut(s)	177, 430, 533, 636, 848
PspGI	CCWGG	5 cut(s)	177, 430, 533, 636, 848
PspN4I	GGNNCC	3 cut(s)	117, 772, 977
PspPI	GGNCC	2 cut(s)	115, 217
PstI	CTGCAG	1 cut(s)	468
PstNI	CAGNNNCTG	1 cut(s)	1031
RsaI	GTAC	1 cut(s)	895
RsaNI	GTAC	1 cut(s)	894
SacI	GAGCTC	1 cut(s)	308
SapI	GCTCTTC	2 cut(s)	167, 432
SaqAI	TTAA	3 cut(s)	654, 831, 1053
SatI	GCNGC	7 cut(s)	99, 255, 464, 642, 753, 803, 1047
Sau3AI	GATC	5 cut(s)	61, 151, 298, 691, 1076
Sau96I	GGNCC	2 cut(s)	115, 217
SchI	GAGTC	4 cut(s)	53, 86, 248, 769
ScrFI	CCNGG	5 cut(s)	179, 432, 535, 638, 850
SduI	GDGCHC	3 cut(s)	308, 878, 1129
SfaNI	GCATC	1 cut(s)	213
SfcI	CTRYAG	3 cut(s)	464, 520, 1057
SinI	GGWCC	1 cut(s)	115
SmlI	CTYRAG	2 cut(s)	877, 918
SmoI	CTYRAG	2 cut(s)	877, 918
Sse9I	AATT	9 cut(s)	121, 160, 322, 386, 472, 655, 697, 819, 1041
SsiI	CCGC	3 cut(s)	660, 1062, 1117
SspI	AATATT	1 cut(s)	901
SstI	GAGCTC	1 cut(s)	308
StyD4I	CCNGG	5 cut(s)	177, 430, 533, 636, 848
StyI	CCWWGG	3 cut(s)	375, 415, 979
TaaI	ACNGT	5 cut(s)	595, 677, 936, 1027, 1058
TaiI	ACGT	1 cut(s)	868
TaqI	TCGA	4 cut(s)	30, 66, 237, 709
TasI	AATT	9 cut(s)	121, 160, 322, 386, 472, 655, 697, 819, 1041
TfiI	GAWTC	2 cut(s)	370, 944
Tru1I	TTAA	3 cut(s)	654, 831, 1053
Tru9I	TTAA	3 cut(s)	654, 831, 1053
TscAI	CASTG	2 cut(s)	1032, 1086
TseI	GCWGC	7 cut(s)	98, 254, 463, 641, 752, 802, 1046
TspDTI	ATGAA	3 cut(s)	379, 750, 876
TspRI	CASTG	2 cut(s)	1032, 1086
Van91I	CCANNNNNTGG	1 cut(s)	271
VpaK11BI	GGWCC	1 cut(s)	115
VspI	ATTAAT	1 cut(s)	654
XapI	RAATTY	2 cut(s)	322, 386
XcmI	CCANNNNNNNNNTGG	1 cut(s)	227
XmiI	GTMKAC	1 cut(s)	672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.