Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008678

Physical Location & Seq

Genomic Coordinates Forward (+)

10138477 .. 10140444

Gene Structure 1968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g14790.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGAGTCCCAAGGAAGGAGGAGCTCTTGCCAGGAAGAGATATTCATCAAAACAAACAGCTTCTTCTCCCACGTCTGCCAAACAAGAAGAAGAAATGAAGAACCATCAAAACCTAATCCGTAACATCTCTTCTGCAGACAATATTAAGAACAAGAGGAAGAAGAAGAAGAAGCAAAACAAGGCGAAACCGAAACGGTACGGGTTGATGTCGTATTGGGAGTTGCCGGAGTACATGAAGGACAATGAGTTCATACTCAATTATTACCGCGCTGATTGGCCTCTGGCGGAAGCCTTCTTCAGCGTGTTCCGGTGGCATAACGAAACCCTCAACGTTTGGACGCATTTCATTGGGTTTGTTCTGTTTCTGGGTTTGACTATGGCGAATCTGTTGGAAGTGCCTCAGGTAGCGGATCTCCTTGCCTTTTTTTCCAGGTCCACGCCTATTAGCGCAGTCACAAATGTCTCCCATGATTTCATTTCGGGGATGACAACAAATCTTACTGATCTGAAGCAAATGACATCTCAGGATATGGAATTTGCATCATCAGTAGCATCACCTGAAATGGGCGTGACATATTGGCCATTTTATGTGTTCCTCGCCGGCTCTATGTTCTGCCTCCTCTCAAGCACCATTTGCCACCTCTTTTCATGTCACTCCCACCCATTAAACCTCATGCTCCTCCGCATCGACTACGCTGGCATCACCACCATGATCATCACCTCATTCTTCCCTCCAATCTACTACATCTTCCAATGCGACACGCGCTGGCAGTTCATCTACCTCGGCGGCATAACGGTCATGGGCATTTTCACTATCGTGACATTGCTCTCGCCTAAGCTCTCAAGCAGCGAATTTCGCACATTTCGCGCCTTGTTGTTTGCTTCAATGGGGTTGTTTGGTATCATCCCTGCCATCCATGCCAGCGTTGTAAACTGGGGCAATCCAAGGCGCAACCTCACTCTAGTGTTTGAAGCTGCCATGGCGTTTTTCTATTTGACGGGGACCGGATTTTATGTCACTCGGATTCCGGAGAGATGGAGGCCGGGGTGGTTTGATTTGGCAGGGCACAGCCATCAGATATTTCATGTTTTGGTGGTTTTGGGTGCGTTGGCGCATTATGGTGCAATTCTTGTAATGCTAGACTGGCGAAACAGCTTTGGATGTGACAGTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009743 GO:0009744 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0010033 GO:0010646 GO:0010648 GO:0023051 GO:0023057 GO:0034285 GO:0042221 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:1901419 GO:1901420 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

ko04152 ko04211 ko04920 ko04932 map04152 map04211 map04920 map04932

Pfam Domains

Protein Families

HlyIII

Protein Analysis

392

Amino Acids

44.65

Weight (kDa)

9.23

Isoelectric Point (pI)

50.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20270
fragaria_vesca	FvH4_1g02500 FvH4_1g02500 FvH4_1g02500
malus_domestica	MD02G1022400.v1.1 MD15G1165000.v1.1
prunus_persica	Prupe.7G249700_v2.0.a1
pyrus_communis	pycom02g01930 pycom15g14790 pycom15g39150
rosa_chinensis	RchiOBHm_Chr2g0087501
rosa_laevigata	RLG00000015874
rosa_multiflora	Rmu_co8128214.1_g000001 Rmu_sc0002299.1_g000010
rosa_roxburghii	Rroxscaffold_2G00153500
rosa_rugosa	Rorug01G0476100 Rorug01G0476200 Rorug01G0476300
rosa_samantha	Rh2AG029500 Rh2BG029600 Rh2CG029600 Rh2DG029500
rosa_wichuraiana	Rw2G002340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	267, 763, 867
AccIII	TCCGGA	1 cut(s)	1027
AciI	CCGC	5 cut(s)	265, 284, 407, 682, 786
AclI	AACGTT	1 cut(s)	330
AclWI	GGATC	1 cut(s)	417
AcoI	YGGCCR	1 cut(s)	578
AcsI	RAATTY	2 cut(s)	533, 851
AcuI	CTGAAG	2 cut(s)	280, 527
AfaI	GTAC	2 cut(s)	197, 230
AfiI	CCNNNNNNNGG	2 cut(s)	14, 563
AgsI	TTSAA	2 cut(s)	885, 971
AjiI	CACGTC	1 cut(s)	72
AjnI	CCWGG	2 cut(s)	29, 428
AleI	CACNNNNGTG	2 cut(s)	815, 962
AloI	GAACNNNNNNTCC	2 cut(s)	230, 262
AluBI	AGCT	5 cut(s)	23, 59, 838, 974, 1155
AluI	AGCT	5 cut(s)	23, 59, 838, 974, 1155
Alw21I	GWGCWC	1 cut(s)	25
Alw26I	GTCTC	1 cut(s)	466
AlwI	GGATC	1 cut(s)	417
Aor13HI	TCCGGA	1 cut(s)	1027
AoxI	GGCC	3 cut(s)	275, 578, 1040
ApeKI	GCWGC	2 cut(s)	846, 974
ApoI	RAATTY	2 cut(s)	533, 851
AspLEI	GCGC	6 cut(s)	269, 449, 765, 869, 951, 1114
AspS9I	GGNCC	2 cut(s)	432, 1002
AsuC2I	CCSGG	1 cut(s)	1044
AsuHPI	GGTGA	3 cut(s)	546, 694, 709
AvaII	GGWCC	2 cut(s)	432, 1002
AxyI	CCTNAGG	1 cut(s)	399
BaeGI	GKGCMC	1 cut(s)	1068
BalI	TGGCCA	1 cut(s)	580
BanII	GRGCYC	1 cut(s)	25
BarI	GAAGNNNNNNTAC	2 cut(s)	112, 144
Bbv12I	GWGCWC	1 cut(s)	25
BbvI	GCAGC	2 cut(s)	858, 961
BccI	CCATC	4 cut(s)	111, 920, 1029, 1080
BciT130I	CCWGG	2 cut(s)	31, 430
BclI	TGATCA	1 cut(s)	711
BcnI	CCSGG	1 cut(s)	1044
BcoDI	GTCTC	1 cut(s)	466
BfaI	CTAG	2 cut(s)	962, 1139
BfmI	CTRYAG	1 cut(s)	132
BisI	GCNGC	3 cut(s)	787, 847, 975
BlsI	GCNGC	3 cut(s)	788, 848, 976
Bme1390I	CCNGG	3 cut(s)	31, 430, 1044
Bme18I	GGWCC	2 cut(s)	432, 1002
BmgBI	CACGTC	1 cut(s)	72
BmgT120I	GGNCC	2 cut(s)	432, 1002
BmiI	GGNNCC	1 cut(s)	1003
BmrFI	CCNGG	3 cut(s)	31, 430, 1044
BmrI	ACTGGG	1 cut(s)	943
BmsI	GCATC	4 cut(s)	548, 560, 693, 708
BmuI	ACTGGG	1 cut(s)	943
Bpu10I	CCTNAGC	1 cut(s)	834
BpuEI	CTTGAG	2 cut(s)	607, 826
BpuMI	CCSGG	1 cut(s)	1044
BsaBI	GATNNNNATC	1 cut(s)	43
BsaJI	CCNNGG	5 cut(s)	9, 781, 944, 978, 1043
BsaWI	WCCGGW	3 cut(s)	306, 1004, 1027
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 563
Bse118I	RCCGGY	1 cut(s)	599
Bse1I	ACTGG	2 cut(s)	938, 1148
Bse21I	CCTNAGG	1 cut(s)	399
Bse3DI	GCAATG	1 cut(s)	821
Bse8I	GATNNNNATC	1 cut(s)	43
BseAI	TCCGGA	1 cut(s)	1027
BseBI	CCWGG	2 cut(s)	31, 430
BseDI	CCNNGG	5 cut(s)	9, 781, 944, 978, 1043
BseGI	GGATG	4 cut(s)	489, 903, 912, 1166
BseJI	GATNNNNATC	1 cut(s)	43
BseLI	CCNNNNNNNGG	2 cut(s)	14, 563
BseMI	GCAATG	1 cut(s)	821
BseMII	CTCAG	2 cut(s)	413, 536
BseNI	ACTGG	2 cut(s)	938, 1148
BseRI	GAGGAG	3 cut(s)	33, 608, 668
BseSI	GKGCMC	1 cut(s)	1068
BseXI	GCAGC	2 cut(s)	858, 961
Bsh1236I	CGCG	3 cut(s)	267, 763, 867
BshFI	GGCC	3 cut(s)	277, 580, 1042
BsiHKAI	GWGCWC	1 cut(s)	25
BsiSI	CCGG	6 cut(s)	224, 307, 600, 1005, 1028, 1043
BslFI	GGGAC	1 cut(s)	1015
BslI	CCNNNNNNNGG	2 cut(s)	14, 563
BsmAI	GTCTC	1 cut(s)	466
BsmFI	GGGAC	1 cut(s)	1015
BsnI	GGCC	3 cut(s)	277, 580, 1042
Bsp1286I	GDGCHC	2 cut(s)	25, 1068
Bsp13I	TCCGGA	1 cut(s)	1027
Bsp143I	GATC	3 cut(s)	409, 502, 711
Bsp19I	CCATGG	1 cut(s)	978
BspACI	CCGC	5 cut(s)	265, 284, 407, 682, 786
BspANI	GGCC	3 cut(s)	277, 580, 1042
BspCNI	CTCAG	2 cut(s)	412, 535
BspEI	TCCGGA	1 cut(s)	1027
BspFNI	CGCG	3 cut(s)	267, 763, 867
BspLI	GGNNCC	1 cut(s)	1003
BspMAI	CTGCAG	1 cut(s)	136
BspPI	GGATC	1 cut(s)	417
BsrDI	GCAATG	1 cut(s)	821
BsrFI	RCCGGY	1 cut(s)	599
BsrI	ACTGG	2 cut(s)	938, 1148
BssAI	RCCGGY	1 cut(s)	599
BssECI	CCNNGG	5 cut(s)	9, 781, 944, 978, 1043
BssMI	GATC	3 cut(s)	409, 502, 711
BssT1I	CCWWGG	3 cut(s)	9, 944, 978
Bst2UI	CCWGG	2 cut(s)	31, 430
Bst4CI	ACNGT	3 cut(s)	195, 796, 1169
Bst6I	CTCTTC	2 cut(s)	29, 133
BstAPI	GCANNNNNTGC	1 cut(s)	633
BstC8I	GCNNGC	4 cut(s)	601, 697, 767, 922
BstDEI	CTNAG	3 cut(s)	399, 522, 834
BstDSI	CCRYGG	1 cut(s)	978
BstF5I	GGATG	4 cut(s)	489, 903, 912, 1166
BstFNI	CGCG	3 cut(s)	267, 763, 867
BstHHI	GCGC	6 cut(s)	269, 449, 765, 869, 951, 1114
BstKTI	GATC	3 cut(s)	412, 505, 714
BstMAI	GTCTC	1 cut(s)	466
BstMBI	GATC	3 cut(s)	409, 502, 711
BstMWI	GCNNNNNNNGC	7 cut(s)	633, 762, 855, 864, 917, 980, 1144
BstNI	CCWGG	2 cut(s)	31, 430
BstSCI	CCNGG	3 cut(s)	29, 428, 1042
BstSFI	CTRYAG	1 cut(s)	132
BstSLI	GKGCMC	1 cut(s)	1068
BstUI	CGCG	3 cut(s)	267, 763, 867
BstV1I	GCAGC	2 cut(s)	858, 961
BstX2I	RGATCY	1 cut(s)	409
BstYI	RGATCY	1 cut(s)	409
Bsu36I	CCTNAGG	1 cut(s)	399
BsuRI	GGCC	3 cut(s)	277, 580, 1042
BtgI	CCRYGG	1 cut(s)	978
BtrI	CACGTC	1 cut(s)	72
BtsCI	GGATG	4 cut(s)	489, 903, 912, 1166
Cac8I	GCNNGC	4 cut(s)	601, 697, 767, 922
CfoI	GCGC	6 cut(s)	269, 449, 765, 869, 951, 1114
Cfr10I	RCCGGY	1 cut(s)	599
Cfr13I	GGNCC	2 cut(s)	432, 1002
CseI	GACGC	1 cut(s)	346
Csp6I	GTAC	2 cut(s)	196, 229
CviAII	CATG	9 cut(s)	232, 467, 648, 673, 709, 799, 917, 979, 1085
CviQI	GTAC	2 cut(s)	196, 229
DdeI	CTNAG	3 cut(s)	399, 522, 834
DpnI	GATC	3 cut(s)	411, 504, 713
DpnII	GATC	3 cut(s)	409, 502, 711
EaeI	YGGCCR	1 cut(s)	578
Eam1104I	CTCTTC	2 cut(s)	29, 133
EarI	CTCTTC	2 cut(s)	29, 133
EciI	GGCGGA	1 cut(s)	299
Ecl136II	GAGCTC	1 cut(s)	23
Eco130I	CCWWGG	3 cut(s)	9, 944, 978
Eco24I	GRGCYC	1 cut(s)	25
Eco47I	GGWCC	2 cut(s)	432, 1002
Eco53kI	GAGCTC	1 cut(s)	23
Eco57I	CTGAAG	2 cut(s)	280, 527
Eco81I	CCTNAGG	1 cut(s)	399
EcoICRI	GAGCTC	1 cut(s)	23
EcoRII	CCWGG	2 cut(s)	29, 428
EcoT14I	CCWWGG	3 cut(s)	9, 944, 978
EcoT38I	GRGCYC	1 cut(s)	25
ErhI	CCWWGG	3 cut(s)	9, 944, 978
FaeI	CATG	9 cut(s)	235, 470, 651, 676, 712, 802, 920, 982, 1088
FaqI	GGGAC	1 cut(s)	1015
FatI	CATG	9 cut(s)	231, 466, 647, 672, 708, 798, 916, 978, 1084
FbaI	TGATCA	1 cut(s)	711
Fnu4HI	GCNGC	3 cut(s)	787, 847, 975
FokI	GGATG	3 cut(s)	496, 890, 899
FriOI	GRGCYC	1 cut(s)	25
Fsp4HI	GCNGC	3 cut(s)	787, 847, 975
FspBI	CTAG	2 cut(s)	962, 1139
GlaI	GCGC	6 cut(s)	268, 448, 764, 868, 950, 1113
GluI	GCNGC	3 cut(s)	787, 847, 975
HaeIII	GGCC	3 cut(s)	277, 580, 1042
HapII	CCGG	6 cut(s)	224, 307, 600, 1005, 1028, 1043
HgaI	GACGC	1 cut(s)	346
HhaI	GCGC	6 cut(s)	269, 449, 765, 869, 951, 1114
Hin1II	CATG	9 cut(s)	235, 470, 651, 676, 712, 802, 920, 982, 1088
Hin6I	GCGC	6 cut(s)	267, 447, 763, 867, 949, 1112
HinP1I	GCGC	6 cut(s)	267, 447, 763, 867, 949, 1112
HinfI	GANTC	3 cut(s)	4, 382, 1024
HpaII	CCGG	6 cut(s)	224, 307, 600, 1005, 1028, 1043
HphI	GGTGA	3 cut(s)	546, 694, 709
Hpy166II	GTNNAC	2 cut(s)	435, 931
Hpy188I	TCNGA	3 cut(s)	507, 1023, 1077
Hpy188III	TCNNGA	3 cut(s)	524, 817, 1028
Hpy8I	GTNNAC	2 cut(s)	435, 931
HpyAV	CCTTC	3 cut(s)	8, 229, 301
HpyCH4III	ACNGT	3 cut(s)	195, 796, 1169
HpyCH4IV	ACGT	2 cut(s)	71, 330
HpyCH4V	TGCA	3 cut(s)	134, 539, 1124
HpyF10VI	GCNNNNNNNGC	7 cut(s)	633, 762, 855, 864, 917, 980, 1144
HpyF3I	CTNAG	3 cut(s)	399, 522, 834
HpySE526I	ACGT	2 cut(s)	71, 330
Hsp92II	CATG	9 cut(s)	235, 470, 651, 676, 712, 802, 920, 982, 1088
HspAI	GCGC	6 cut(s)	267, 447, 763, 867, 949, 1112
Kpn2I	TCCGGA	1 cut(s)	1027
KroI	GCCGGC	1 cut(s)	599
KroNI	GCCGGC	1 cut(s)	601
Ksp22I	TGATCA	1 cut(s)	711
Kzo9I	GATC	3 cut(s)	409, 502, 711
LmnI	GCTCC	2 cut(s)	20, 681
Lsp1109I	GCAGC	2 cut(s)	858, 961
LweI	GCATC	4 cut(s)	548, 560, 693, 708
MaeI	CTAG	2 cut(s)	962, 1139
MaeII	ACGT	2 cut(s)	71, 330
MaeIII	GTNAC	8 cut(s)	119, 451, 568, 650, 817, 1015, 1163, 1169
MalI	GATC	3 cut(s)	411, 504, 713
MboI	GATC	3 cut(s)	409, 502, 711
MflI	RGATCY	1 cut(s)	409
MhlI	GDGCHC	2 cut(s)	25, 1068
MlsI	TGGCCA	1 cut(s)	580
MluCI	AATT	4 cut(s)	256, 533, 851, 1125
MluNI	TGGCCA	1 cut(s)	580
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	1 cut(s)	369
Mox20I	TGGCCA	1 cut(s)	580
MroI	TCCGGA	1 cut(s)	1027
MroNI	GCCGGC	1 cut(s)	599
MscI	TGGCCA	1 cut(s)	580
MseI	TTAA	2 cut(s)	144, 665
MslI	CAYNNNNRTG	4 cut(s)	707, 815, 962, 1119
Msp20I	TGGCCA	1 cut(s)	580
MspI	CCGG	6 cut(s)	224, 307, 600, 1005, 1028, 1043
MspR9I	CCNGG	3 cut(s)	31, 430, 1044
MvaI	CCWGG	2 cut(s)	31, 430
MvnI	CGCG	3 cut(s)	267, 763, 867
MwoI	GCNNNNNNNGC	7 cut(s)	633, 762, 855, 864, 917, 980, 1144
NaeI	GCCGGC	1 cut(s)	601
NciI	CCSGG	1 cut(s)	1044
NcoI	CCATGG	1 cut(s)	978
NdeII	GATC	3 cut(s)	409, 502, 711
NgoMIV	GCCGGC	1 cut(s)	599
NlaIII	CATG	9 cut(s)	235, 470, 651, 676, 712, 802, 920, 982, 1088
NlaIV	GGNNCC	1 cut(s)	1003
NmeAIII	GCCGAG	1 cut(s)	762
NmuCI	GTSAC	6 cut(s)	451, 568, 650, 817, 1015, 1163
OliI	CACNNNNGTG	2 cut(s)	815, 962
PdiI	GCCGGC	1 cut(s)	601
PfeI	GAWTC	2 cut(s)	382, 1024
PkrI	GCNGC	3 cut(s)	788, 848, 976
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Psp124BI	GAGCTC	1 cut(s)	25
Psp1406I	AACGTT	1 cut(s)	330
Psp6I	CCWGG	2 cut(s)	29, 428
PspGI	CCWGG	2 cut(s)	29, 428
PspN4I	GGNNCC	1 cut(s)	1003
PspPI	GGNCC	2 cut(s)	432, 1002
PstI	CTGCAG	1 cut(s)	136
PsuI	RGATCY	1 cut(s)	409
RsaI	GTAC	2 cut(s)	197, 230
RsaNI	GTAC	2 cut(s)	196, 229
RseI	CAYNNNNRTG	4 cut(s)	707, 815, 962, 1119
SacI	GAGCTC	1 cut(s)	25
SaqAI	TTAA	2 cut(s)	144, 665
SatI	GCNGC	3 cut(s)	787, 847, 975
Sau3AI	GATC	3 cut(s)	409, 502, 711
Sau96I	GGNCC	2 cut(s)	432, 1002
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	3 cut(s)	31, 430, 1044
SduI	GDGCHC	2 cut(s)	25, 1068
SfaNI	GCATC	4 cut(s)	548, 560, 693, 708
SfcI	CTRYAG	1 cut(s)	132
SinI	GGWCC	2 cut(s)	432, 1002
SmiMI	CAYNNNNRTG	4 cut(s)	707, 815, 962, 1119
SmlI	CTYRAG	2 cut(s)	622, 841
SmoI	CTYRAG	2 cut(s)	622, 841
Sse9I	AATT	4 cut(s)	256, 533, 851, 1125
SsiI	CCGC	5 cut(s)	265, 284, 407, 682, 786
SspI	AATATT	1 cut(s)	142
SspMI	CTAG	2 cut(s)	962, 1139
SstI	GAGCTC	1 cut(s)	25
StyD4I	CCNGG	3 cut(s)	29, 428, 1042
StyI	CCWWGG	3 cut(s)	9, 944, 978
TaaI	ACNGT	3 cut(s)	195, 796, 1169
TaiI	ACGT	2 cut(s)	74, 333
TaqI	TCGA	1 cut(s)	687
TasI	AATT	4 cut(s)	256, 533, 851, 1125
TatI	WGTACW	1 cut(s)	228
TauI	GCSGC	1 cut(s)	789
TfiI	GAWTC	2 cut(s)	382, 1024
Tru1I	TTAA	2 cut(s)	144, 665
Tru9I	TTAA	2 cut(s)	144, 665
TseFI	GTSAC	6 cut(s)	451, 568, 650, 817, 1015, 1163
TseI	GCWGC	2 cut(s)	846, 974
Tsp45I	GTSAC	6 cut(s)	451, 568, 650, 817, 1015, 1163
TspDTI	ATGAA	9 cut(s)	33, 110, 238, 248, 334, 463, 636, 763, 1073
TspGWI	ACGGA	1 cut(s)	107
VpaK11BI	GGWCC	2 cut(s)	432, 1002
XapI	RAATTY	2 cut(s)	533, 851
XspI	CTAG	2 cut(s)	962, 1139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.