Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008678

Physical Location & Seq

Genomic Coordinates Forward (+)

2020603 .. 2023021

Gene Structure 2419 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015874

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGAGTCCCGGGGAAGGAGGAGGAGCTGCTGTAAATTTCAGGAAGAGATCAAAACGACGGTCAAACAATGCTGCCGGAGCTACGAAAGATCAACCCCAAAACCATGAAGATAGTTGTTATTACCAGTCATCTTCTTCGTCCTCCTCTTCGGCTTCTAATTATGAGAGCAAGAAGAAGAGGATTAGGAAGAAGAAGGGTAAAGGGAACAACAACAACGTTAGGGGGTCGTCGAAACGGTACGAGCTGATGTCGTATTGGGAGTTGCCGGAATATATGAAGGATAACGAGTTCATTTTGAATTATTACCGAGCTGATTGGCCTATTCTCGAAGCTCTTTTCAGCGTTTTCCGTTGGCATAATGAAACTCTCAACATTTGGACGCATTTGATTGGGTTTGTTCTGTTTGTGGGTTTGACTATGGCGAATTTGTGGGAAGTGCCTCAGGTAGCGGATCTCTTTGGCTTTTTTAACAGGTCCACATTTAGTGCAGCTACAAATGTTTCCCATAATTTTAGTGCGGAGACAACAAACTTTGTTCATGATTTGAAGCAAATAACATCTCAGGAAATGAACAACATTGCATCGCCTGGTGATCGATTGAGCGTGGAACTTTGGCCGTTTTATGTGTTCCTAGCTGGCTCTATGTTCTGCCTTTTCTCCAGCAGCATTTGCCATCTCTTTTCATGCCACTCTCACCCCTTAAACGTCTTGCTCTTGCGCATAGATTACGCAGGCATCACCACCATGATCATCACCTCATTTTTCCCTCCGATTTACTACATCTTCCAATGTGATCCGCGCTGGCAATTCATTTACCTCGGAGGCATCACACTAATGGGAATTTGCACCATCATCACACTGTTCTCCCCTAAGCTTTCTAGCTCCAAATTTCGAACATTTCGAGCTTTGCTTTTTGCTTCACTGGGGTTGTTTGGGATTGTGCCTGCAGTCCATGCCAGCGTTGCGAATTGGGGCAATCCGAAGCGTGATATCACTCTGGTTTATGAGGTTGCCATGGCGCTTTTCTATTTAACAGGGACCGGATTTTACATCACTCGAATTCCCGAGAAATGGAGACCGGGGTGCTTCGATTTGGCAGGTCACAGCCATCAGATTTTTCATGTTTTGGTGGTGATGGGTGCATTGGCTCATTATGCTGCCATACTTGTAATGCTAGACTGGCGAAGCACCTTGGGGTGTGACATCAATATTACTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009743 GO:0009744 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0010033 GO:0010646 GO:0010648 GO:0023051 GO:0023057 GO:0034285 GO:0042221 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:1901419 GO:1901420 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

ko04152 ko04211 ko04920 ko04932 map04152 map04211 map04920 map04932

Pfam Domains

Protein Families

HlyIII

Protein Analysis

407

Amino Acids

46.03

Weight (kDa)

9.08

Isoelectric Point (pI)

55.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HlyIII	PF03006	116 - 385	4e-61	Haemolysin-III related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20270
fragaria_vesca	FvH4_1g02500 FvH4_1g02500 FvH4_1g02500
malus_domestica	MD02G1022400.v1.1 MD15G1165000.v1.1
prunus_persica	Prupe.7G249700_v2.0.a1
pyrus_communis	pycom02g01930 pycom15g14790 pycom15g39150
rosa_chinensis	RchiOBHm_Chr2g0087501
rosa_laevigata	RLG00000015874
rosa_multiflora	Rmu_co8128214.1_g000001 Rmu_sc0002299.1_g000010
rosa_roxburghii	Rroxscaffold_2G00153500
rosa_rugosa	Rorug01G0476100 Rorug01G0476200 Rorug01G0476300
rosa_samantha	Rh2AG029500 Rh2BG029600 Rh2CG029600 Rh2DG029500
rosa_wichuraiana	Rw2G002340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	719
Acc36I	ACCTGC	1 cut(s)	1088
AccII	CGCG	1 cut(s)	799
AciI	CCGC	3 cut(s)	449, 518, 797
AclI	AACGTT	1 cut(s)	216
AclWI	GGATC	2 cut(s)	459, 788
AcoI	YGGCCR	1 cut(s)	614
AcsI	RAATTY	5 cut(s)	34, 424, 840, 887, 1059
AfaI	GTAC	1 cut(s)	239
AfiI	CCNNNNNNNGG	2 cut(s)	14, 1071
AgsI	TTSAA	2 cut(s)	298, 547
AjnI	CCWGG	1 cut(s)	586
AloI	GAACNNNNNNTCC	2 cut(s)	272, 304
Alw26I	GTCTC	2 cut(s)	515, 1069
AlwI	GGATC	2 cut(s)	459, 788
Ama87I	CYCGRG	2 cut(s)	8, 1064
AoxI	GGCC	2 cut(s)	317, 614
ApeKI	GCWGC	5 cut(s)	26, 71, 488, 663, 1157
ApoI	RAATTY	5 cut(s)	34, 424, 840, 887, 1059
ArsI	GACNNNNNNTTYG	2 cut(s)	44, 76
AspLEI	GCGC	3 cut(s)	720, 801, 1021
AspS9I	GGNCC	2 cut(s)	474, 1038
AsuC2I	CCSGG	3 cut(s)	9, 10, 1080
AsuHPI	GGTGA	5 cut(s)	602, 686, 730, 745, 1144
AsuII	TTCGAA	1 cut(s)	892
AvaI	CYCGRG	2 cut(s)	8, 1064
AvaII	GGWCC	2 cut(s)	474, 1038
AxyI	CCTNAGG	1 cut(s)	441
BbvI	GCAGC	5 cut(s)	13, 58, 500, 675, 1144
BccI	CCATC	4 cut(s)	681, 857, 1116, 1129
BceAI	ACGGC	1 cut(s)	601
BciT130I	CCWGG	1 cut(s)	588
BclI	TGATCA	1 cut(s)	747
BcnI	CCSGG	3 cut(s)	9, 10, 1080
BcoDI	GTCTC	2 cut(s)	515, 1069
BfaI	CTAG	3 cut(s)	632, 879, 1175
BfmI	CTRYAG	1 cut(s)	945
BfoI	RGCGCY	1 cut(s)	1022
BfuAI	ACCTGC	1 cut(s)	1088
BisI	GCNGC	5 cut(s)	27, 72, 489, 664, 1158
BlsI	GCNGC	5 cut(s)	28, 73, 490, 665, 1159
Bme1390I	CCNGG	4 cut(s)	9, 10, 588, 1080
Bme18I	GGWCC	2 cut(s)	474, 1038
BmeT110I	CYCGRG	2 cut(s)	8, 1064
BmgT120I	GGNCC	2 cut(s)	474, 1038
BmiI	GGNNCC	1 cut(s)	1039
BmrFI	CCNGG	4 cut(s)	9, 10, 588, 1080
BmrI	ACTGGG	1 cut(s)	932
BmsI	GCATC	3 cut(s)	590, 744, 834
BmuI	ACTGGG	1 cut(s)	932
BpmI	CTGGAG	1 cut(s)	643
Bpu10I	CCTNAGC	1 cut(s)	870
Bpu14I	TTCGAA	1 cut(s)	892
BpuMI	CCSGG	3 cut(s)	9, 10, 1080
Bsa29I	ATCGAT	1 cut(s)	595
BsaI	GGTCTC	1 cut(s)	1069
BsaJI	CCNNGG	6 cut(s)	8, 9, 817, 1014, 1079, 1191
BsaWI	WCCGGW	1 cut(s)	1040
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 1071
Bse1I	ACTGG	3 cut(s)	124, 927, 1184
Bse21I	CCTNAGG	1 cut(s)	441
Bse3DI	GCAATG	1 cut(s)	576
BseBI	CCWGG	1 cut(s)	588
BseCI	ATCGAT	1 cut(s)	595
BseDI	CCNNGG	6 cut(s)	8, 9, 817, 1014, 1079, 1191
BseLI	CCNNNNNNNGG	2 cut(s)	14, 1071
BseMI	GCAATG	1 cut(s)	576
BseMII	CTCAG	2 cut(s)	455, 575
BseNI	ACTGG	3 cut(s)	124, 927, 1184
BseRI	GAGGAG	3 cut(s)	33, 36, 133
BseXI	GCAGC	5 cut(s)	13, 58, 500, 675, 1144
BsgI	GTGCAG	1 cut(s)	507
Bsh1236I	CGCG	1 cut(s)	799
BshFI	GGCC	2 cut(s)	319, 616
BshVI	ATCGAT	1 cut(s)	595
BsiHKCI	CYCGRG	2 cut(s)	8, 1064
BsiSI	CCGG	5 cut(s)	9, 75, 266, 1041, 1079
BslFI	GGGAC	1 cut(s)	1051
BslI	CCNNNNNNNGG	2 cut(s)	14, 1071
BsmAI	GTCTC	2 cut(s)	515, 1069
BsmFI	GGGAC	1 cut(s)	1051
BsnI	GGCC	2 cut(s)	319, 616
Bso31I	GGTCTC	1 cut(s)	1069
BsoBI	CYCGRG	2 cut(s)	8, 1064
Bsp119I	TTCGAA	1 cut(s)	892
Bsp143I	GATC	6 cut(s)	47, 88, 451, 592, 747, 793
Bsp19I	CCATGG	1 cut(s)	1014
BspACI	CCGC	3 cut(s)	449, 518, 797
BspANI	GGCC	2 cut(s)	319, 616
BspCNI	CTCAG	2 cut(s)	454, 574
BspDI	ATCGAT	1 cut(s)	595
BspFNI	CGCG	1 cut(s)	799
BspHI	TCATGA	1 cut(s)	538
BspLI	GGNNCC	1 cut(s)	1039
BspMAI	CTGCAG	1 cut(s)	949
BspMI	ACCTGC	1 cut(s)	1088
BspPI	GGATC	2 cut(s)	459, 788
BspT104I	TTCGAA	1 cut(s)	892
BspTNI	GGTCTC	1 cut(s)	1069
BsrDI	GCAATG	1 cut(s)	576
BsrI	ACTGG	3 cut(s)	124, 927, 1184
BssECI	CCNNGG	6 cut(s)	8, 9, 817, 1014, 1079, 1191
BssMI	GATC	6 cut(s)	47, 88, 451, 592, 747, 793
BssT1I	CCWWGG	2 cut(s)	1014, 1191
Bst2UI	CCWGG	1 cut(s)	588
Bst4CI	ACNGT	3 cut(s)	60, 237, 861
Bst6I	CTCTTC	3 cut(s)	38, 151, 170
BstAPI	GCANNNNNTGC	2 cut(s)	669, 953
BstBI	TTCGAA	1 cut(s)	892
BstC8I	GCNNGC	5 cut(s)	637, 733, 803, 945, 958
BstDEI	CTNAG	3 cut(s)	441, 561, 870
BstDSI	CCRYGG	1 cut(s)	1014
BstFNI	CGCG	1 cut(s)	799
BstH2I	RGCGCY	1 cut(s)	1022
BstHHI	GCGC	3 cut(s)	720, 801, 1021
BstKTI	GATC	6 cut(s)	50, 91, 454, 595, 750, 796
BstMAI	GTCTC	2 cut(s)	515, 1069
BstMBI	GATC	6 cut(s)	47, 88, 451, 592, 747, 793
BstMWI	GCNNNNNNNGC	6 cut(s)	77, 669, 953, 962, 1154, 1180
BstNI	CCWGG	1 cut(s)	588
BstSCI	CCNGG	4 cut(s)	7, 8, 586, 1078
BstSFI	CTRYAG	1 cut(s)	945
BstUI	CGCG	1 cut(s)	799
BstV1I	GCAGC	5 cut(s)	13, 58, 500, 675, 1144
BstX2I	RGATCY	1 cut(s)	451
BstYI	RGATCY	1 cut(s)	451
Bsu15I	ATCGAT	1 cut(s)	595
Bsu36I	CCTNAGG	1 cut(s)	441
BsuRI	GGCC	2 cut(s)	319, 616
BsuTUI	ATCGAT	1 cut(s)	595
BtgI	CCRYGG	1 cut(s)	1014
BtgZI	GCGATG	1 cut(s)	567
BtsIMutI	CAGTG	2 cut(s)	857, 920
BveI	ACCTGC	1 cut(s)	1088
Cac8I	GCNNGC	5 cut(s)	637, 733, 803, 945, 958
CciI	TCATGA	1 cut(s)	538
CfoI	GCGC	3 cut(s)	720, 801, 1021
Cfr13I	GGNCC	2 cut(s)	474, 1038
Cfr9I	CCCGGG	1 cut(s)	8
ClaI	ATCGAT	1 cut(s)	595
CseI	GACGC	1 cut(s)	388
Csp6I	GTAC	1 cut(s)	238
CviAII	CATG	7 cut(s)	104, 539, 684, 745, 953, 1015, 1121
CviQI	GTAC	1 cut(s)	238
DdeI	CTNAG	3 cut(s)	441, 561, 870
DpnI	GATC	6 cut(s)	49, 90, 453, 594, 749, 795
DpnII	GATC	6 cut(s)	47, 88, 451, 592, 747, 793
EaeI	YGGCCR	1 cut(s)	614
Eam1104I	CTCTTC	3 cut(s)	38, 151, 170
EarI	CTCTTC	3 cut(s)	38, 151, 170
Eco130I	CCWWGG	2 cut(s)	1014, 1191
Eco31I	GGTCTC	1 cut(s)	1069
Eco32I	GATATC	1 cut(s)	991
Eco47I	GGWCC	2 cut(s)	474, 1038
Eco81I	CCTNAGG	1 cut(s)	441
Eco88I	CYCGRG	2 cut(s)	8, 1064
EcoRI	GAATTC	1 cut(s)	1059
EcoRII	CCWGG	1 cut(s)	586
EcoRV	GATATC	1 cut(s)	991
EcoT14I	CCWWGG	2 cut(s)	1014, 1191
ErhI	CCWWGG	2 cut(s)	1014, 1191
FaeI	CATG	7 cut(s)	107, 542, 687, 748, 956, 1018, 1124
FaqI	GGGAC	1 cut(s)	1051
FatI	CATG	7 cut(s)	103, 538, 683, 744, 952, 1014, 1120
FbaI	TGATCA	1 cut(s)	747
Fnu4HI	GCNGC	5 cut(s)	27, 72, 489, 664, 1158
Fsp4HI	GCNGC	5 cut(s)	27, 72, 489, 664, 1158
FspBI	CTAG	3 cut(s)	632, 879, 1175
FspI	TGCGCA	1 cut(s)	719
GlaI	GCGC	3 cut(s)	719, 800, 1020
GluI	GCNGC	5 cut(s)	27, 72, 489, 664, 1158
GsuI	CTGGAG	1 cut(s)	643
HaeII	RGCGCY	1 cut(s)	1022
HaeIII	GGCC	2 cut(s)	319, 616
HapII	CCGG	5 cut(s)	9, 75, 266, 1041, 1079
HgaI	GACGC	1 cut(s)	388
HhaI	GCGC	3 cut(s)	720, 801, 1021
Hin1II	CATG	7 cut(s)	107, 542, 687, 748, 956, 1018, 1124
Hin6I	GCGC	3 cut(s)	718, 799, 1019
HinP1I	GCGC	3 cut(s)	718, 799, 1019
HindIII	AAGCTT	1 cut(s)	872
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	5 cut(s)	9, 75, 266, 1041, 1079
HphI	GGTGA	5 cut(s)	602, 686, 730, 745, 1144
Hpy166II	GTNNAC	1 cut(s)	477
Hpy188I	TCNGA	4 cut(s)	771, 821, 981, 1113
Hpy188III	TCNNGA	5 cut(s)	40, 326, 539, 563, 1064
Hpy8I	GTNNAC	1 cut(s)	477
Hpy99I	CGWCG	2 cut(s)	60, 232
HpyAV	CCTTC	3 cut(s)	8, 187, 271
HpyCH4III	ACNGT	3 cut(s)	60, 237, 861
HpyCH4IV	ACGT	2 cut(s)	216, 705
HpyCH4V	TGCA	5 cut(s)	488, 581, 846, 947, 1142
HpyF10VI	GCNNNNNNNGC	6 cut(s)	77, 669, 953, 962, 1154, 1180
HpyF3I	CTNAG	3 cut(s)	441, 561, 870
HpySE526I	ACGT	2 cut(s)	216, 705
Hsp92II	CATG	7 cut(s)	107, 542, 687, 748, 956, 1018, 1124
HspAI	GCGC	3 cut(s)	718, 799, 1019
Ksp22I	TGATCA	1 cut(s)	747
Kzo9I	GATC	6 cut(s)	47, 88, 451, 592, 747, 793
LmnI	GCTCC	3 cut(s)	23, 77, 887
Lsp1109I	GCAGC	5 cut(s)	13, 58, 500, 675, 1144
LweI	GCATC	3 cut(s)	590, 744, 834
MaeI	CTAG	3 cut(s)	632, 879, 1175
MaeII	ACGT	2 cut(s)	216, 705
MaeIII	GTNAC	2 cut(s)	1100, 1199
MalI	GATC	6 cut(s)	49, 90, 453, 594, 749, 795
MboI	GATC	6 cut(s)	47, 88, 451, 592, 747, 793
MflI	RGATCY	1 cut(s)	451
MlyI	GAGTC	1 cut(s)	13
MseI	TTAA	3 cut(s)	468, 701, 1031
MslI	CAYNNNNRTG	2 cut(s)	743, 833
MspI	CCGG	5 cut(s)	9, 75, 266, 1041, 1079
MspR9I	CCNGG	4 cut(s)	9, 10, 588, 1080
MvaI	CCWGG	1 cut(s)	588
MvnI	CGCG	1 cut(s)	799
MwoI	GCNNNNNNNGC	6 cut(s)	77, 669, 953, 962, 1154, 1180
NciI	CCSGG	3 cut(s)	9, 10, 1080
NcoI	CCATGG	1 cut(s)	1014
NdeII	GATC	6 cut(s)	47, 88, 451, 592, 747, 793
NlaIII	CATG	7 cut(s)	107, 542, 687, 748, 956, 1018, 1124
NlaIV	GGNNCC	1 cut(s)	1039
NmuCI	GTSAC	2 cut(s)	1100, 1199
NsbI	TGCGCA	1 cut(s)	719
NspV	TTCGAA	1 cut(s)	892
PagI	TCATGA	1 cut(s)	538
PcsI	WCGNNNNNNNCGW	1 cut(s)	898
PkrI	GCNGC	5 cut(s)	28, 73, 490, 665, 1159
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Psp1406I	AACGTT	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	586
PspGI	CCWGG	1 cut(s)	586
PspN4I	GGNNCC	1 cut(s)	1039
PspPI	GGNCC	2 cut(s)	474, 1038
PstI	CTGCAG	1 cut(s)	949
PsuI	RGATCY	1 cut(s)	451
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
RseI	CAYNNNNRTG	2 cut(s)	743, 833
SaqAI	TTAA	3 cut(s)	468, 701, 1031
SatI	GCNGC	5 cut(s)	27, 72, 489, 664, 1158
Sau3AI	GATC	6 cut(s)	47, 88, 451, 592, 747, 793
Sau96I	GGNCC	2 cut(s)	474, 1038
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	4 cut(s)	9, 10, 588, 1080
SfaNI	GCATC	3 cut(s)	590, 744, 834
SfcI	CTRYAG	1 cut(s)	945
SfuI	TTCGAA	1 cut(s)	892
SinI	GGWCC	2 cut(s)	474, 1038
SmaI	CCCGGG	1 cut(s)	10
SmiMI	CAYNNNNRTG	2 cut(s)	743, 833
SsiI	CCGC	3 cut(s)	449, 518, 797
SspI	AATATT	1 cut(s)	1210
SspMI	CTAG	3 cut(s)	632, 879, 1175
StyD4I	CCNGG	4 cut(s)	7, 8, 586, 1078
StyI	CCWWGG	2 cut(s)	1014, 1191
TaaI	ACNGT	3 cut(s)	60, 237, 861
TaiI	ACGT	2 cut(s)	219, 708
TaqI	TCGA	7 cut(s)	230, 327, 595, 892, 901, 1057, 1089
Tru1I	TTAA	3 cut(s)	468, 701, 1031
Tru9I	TTAA	3 cut(s)	468, 701, 1031
TscAI	CASTG	2 cut(s)	864, 927
TseFI	GTSAC	2 cut(s)	1100, 1199
TseI	GCWGC	5 cut(s)	26, 71, 488, 663, 1157
Tsp45I	GTSAC	2 cut(s)	1100, 1199
TspDTI	ATGAA	9 cut(s)	120, 280, 290, 375, 527, 584, 672, 799, 1109
TspGWI	ACGGA	1 cut(s)	338
TspMI	CCCGGG	1 cut(s)	8
TspRI	CASTG	2 cut(s)	864, 927
VpaK11BI	GGWCC	2 cut(s)	474, 1038
XapI	RAATTY	5 cut(s)	34, 424, 840, 887, 1059
XmaI	CCCGGG	1 cut(s)	8
XspI	CTAG	3 cut(s)	632, 879, 1175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.