Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0008678

Physical Location & Seq

Genomic Coordinates Forward (+)

12422140 .. 12422826

Gene Structure 687 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1165000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGAGTCCCAAGGAAGGAGGAGCTCTTGCCAGGAAGAGATATTCATCAAAACAAACAGCTTCTTCTCCCACGTCTGCCAAACAAGAAGAAGAAATGAAGAATCATCAAACCCTAATCCGTAACATCTCTTCTGCAGATATTAAGAACAAGAGGAAGAAGAAGAAGAAGCAAAACAAGGCGAAACCGAAACGGTACGGGTTGATGTCGTATTGGGAGTTGCCGGAGTACATGAAGGACAATGAGTTCATACTCAATTACTACCGAGCTGATTGGCCTCTGGCGGAAGCCTTCTTCAGCGTGTTCCGGTGGCATAACGAAACCCTCAACGTTTGGACGCATTTGATTGGGTTTGTTCTGTTTCTGGGTTTGACCATGGCGAATCTGTTGGAAGTGCCTCAGGTAGCGGATCTCCTTGCCTTTTTTTCCAGGTTTGTTGAGGATTTTCTTTCTTTATCTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009743 GO:0009744 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0010033 GO:0010646 GO:0010648 GO:0023051 GO:0023057 GO:0034285 GO:0042221 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:1901419 GO:1901420 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

ko04152 ko04211 ko04920 ko04932 map04152 map04211 map04920 map04932

Pfam Domains

Protein Families

HlyIII

Protein Analysis

154

Amino Acids

17.94

Weight (kDa)

9.67

Isoelectric Point (pI)

60.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HlyIII	PF03006	101 - 133	1.7e-07	Haemolysin-III related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0008678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20270
fragaria_vesca	FvH4_1g02500 FvH4_1g02500 FvH4_1g02500
malus_domestica	MD02G1022400.v1.1 MD15G1165000.v1.1
prunus_persica	Prupe.7G249700_v2.0.a1
pyrus_communis	pycom02g01930 pycom15g14790 pycom15g39150
rosa_chinensis	RchiOBHm_Chr2g0087501
rosa_laevigata	RLG00000015874
rosa_multiflora	Rmu_co8128214.1_g000001 Rmu_sc0002299.1_g000010
rosa_roxburghii	Rroxscaffold_2G00153500
rosa_rugosa	Rorug01G0476100 Rorug01G0476200 Rorug01G0476300
rosa_samantha	Rh2AG029500 Rh2BG029600 Rh2CG029600 Rh2DG029500
rosa_wichuraiana	Rw2G002340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	281, 404
AclI	AACGTT	1 cut(s)	327
AclWI	GGATC	1 cut(s)	414
AcuI	CTGAAG	1 cut(s)	277
AfaI	GTAC	2 cut(s)	194, 227
AfiI	CCNNNNNNNGG	1 cut(s)	14
AjiI	CACGTC	1 cut(s)	72
AjnI	CCWGG	2 cut(s)	29, 425
AloI	GAACNNNNNNTCC	2 cut(s)	227, 259
AluBI	AGCT	3 cut(s)	23, 59, 266
AluI	AGCT	3 cut(s)	23, 59, 266
Alw21I	GWGCWC	1 cut(s)	25
AlwI	GGATC	1 cut(s)	414
AoxI	GGCC	1 cut(s)	272
AxyI	CCTNAGG	1 cut(s)	396
BanII	GRGCYC	1 cut(s)	25
BarI	GAAGNNNNNNTAC	2 cut(s)	112, 144
Bbv12I	GWGCWC	1 cut(s)	25
BciT130I	CCWGG	2 cut(s)	31, 427
BfmI	CTRYAG	1 cut(s)	132
Bme1390I	CCNGG	2 cut(s)	31, 427
BmgBI	CACGTC	1 cut(s)	72
BmrFI	CCNGG	2 cut(s)	31, 427
BsaBI	GATNNNNATC	1 cut(s)	43
BsaJI	CCNNGG	2 cut(s)	9, 372
BsaWI	WCCGGW	1 cut(s)	303
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse21I	CCTNAGG	1 cut(s)	396
Bse8I	GATNNNNATC	1 cut(s)	43
BseBI	CCWGG	2 cut(s)	31, 427
BseDI	CCNNGG	2 cut(s)	9, 372
BseJI	GATNNNNATC	1 cut(s)	43
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseMII	CTCAG	1 cut(s)	410
BseRI	GAGGAG	1 cut(s)	33
BshFI	GGCC	1 cut(s)	274
BsiHKAI	GWGCWC	1 cut(s)	25
BsiSI	CCGG	2 cut(s)	221, 304
BslI	CCNNNNNNNGG	1 cut(s)	14
BsnI	GGCC	1 cut(s)	274
Bsp1286I	GDGCHC	1 cut(s)	25
Bsp143I	GATC	1 cut(s)	406
Bsp19I	CCATGG	1 cut(s)	372
BspACI	CCGC	2 cut(s)	281, 404
BspANI	GGCC	1 cut(s)	274
BspCNI	CTCAG	1 cut(s)	409
BspMAI	CTGCAG	1 cut(s)	136
BspPI	GGATC	1 cut(s)	414
BssECI	CCNNGG	2 cut(s)	9, 372
BssMI	GATC	1 cut(s)	406
BssT1I	CCWWGG	2 cut(s)	9, 372
Bst2UI	CCWGG	2 cut(s)	31, 427
Bst4CI	ACNGT	1 cut(s)	192
Bst6I	CTCTTC	2 cut(s)	29, 133
BstDEI	CTNAG	1 cut(s)	396
BstDSI	CCRYGG	1 cut(s)	372
BstKTI	GATC	1 cut(s)	409
BstMBI	GATC	1 cut(s)	406
BstNI	CCWGG	2 cut(s)	31, 427
BstSCI	CCNGG	2 cut(s)	29, 425
BstSFI	CTRYAG	1 cut(s)	132
BstX2I	RGATCY	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	406
Bsu36I	CCTNAGG	1 cut(s)	396
BsuRI	GGCC	1 cut(s)	274
BtgI	CCRYGG	1 cut(s)	372
BtrI	CACGTC	1 cut(s)	72
CseI	GACGC	1 cut(s)	343
Csp6I	GTAC	2 cut(s)	193, 226
CviAII	CATG	2 cut(s)	229, 373
CviJI	RGCY	5 cut(s)	23, 59, 266, 274, 287
CviKI_1	RGCY	5 cut(s)	23, 59, 266, 274, 287
CviQI	GTAC	2 cut(s)	193, 226
DdeI	CTNAG	1 cut(s)	396
DpnI	GATC	1 cut(s)	408
DpnII	GATC	1 cut(s)	406
Eam1104I	CTCTTC	2 cut(s)	29, 133
EarI	CTCTTC	2 cut(s)	29, 133
EciI	GGCGGA	1 cut(s)	296
Ecl136II	GAGCTC	1 cut(s)	23
Eco130I	CCWWGG	2 cut(s)	9, 372
Eco24I	GRGCYC	1 cut(s)	25
Eco53kI	GAGCTC	1 cut(s)	23
Eco57I	CTGAAG	1 cut(s)	277
Eco81I	CCTNAGG	1 cut(s)	396
EcoICRI	GAGCTC	1 cut(s)	23
EcoRII	CCWGG	2 cut(s)	29, 425
EcoT14I	CCWWGG	2 cut(s)	9, 372
EcoT38I	GRGCYC	1 cut(s)	25
ErhI	CCWWGG	2 cut(s)	9, 372
FaeI	CATG	2 cut(s)	232, 376
FaiI	YATR	4 cut(s)	230, 248, 312, 374
FatI	CATG	2 cut(s)	228, 372
FriOI	GRGCYC	1 cut(s)	25
HaeIII	GGCC	1 cut(s)	274
HapII	CCGG	2 cut(s)	221, 304
HgaI	GACGC	1 cut(s)	343
Hin1II	CATG	2 cut(s)	232, 376
HinfI	GANTC	3 cut(s)	4, 100, 379
HpaII	CCGG	2 cut(s)	221, 304
Hpy188I	TCNGA	1 cut(s)	461
HpyAV	CCTTC	3 cut(s)	8, 226, 298
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4IV	ACGT	2 cut(s)	71, 327
HpyCH4V	TGCA	1 cut(s)	134
HpyF3I	CTNAG	1 cut(s)	396
HpySE526I	ACGT	2 cut(s)	71, 327
Hsp92II	CATG	2 cut(s)	232, 376
Kzo9I	GATC	1 cut(s)	406
LmnI	GCTCC	1 cut(s)	20
LpnPI	CCDG	9 cut(s)	16, 43, 234, 263, 317, 347, 383, 412, 439
MaeII	ACGT	2 cut(s)	71, 327
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	1 cut(s)	408
MboI	GATC	1 cut(s)	406
MflI	RGATCY	1 cut(s)	406
MhlI	GDGCHC	1 cut(s)	25
MluCI	AATT	1 cut(s)	253
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	1 cut(s)	366
MnlI	CCTC	6 cut(s)	11, 144, 285, 332, 405, 430
MseI	TTAA	1 cut(s)	141
MspI	CCGG	2 cut(s)	221, 304
MspR9I	CCNGG	2 cut(s)	31, 427
MvaI	CCWGG	2 cut(s)	31, 427
NcoI	CCATGG	1 cut(s)	372
NdeII	GATC	1 cut(s)	406
NlaIII	CATG	2 cut(s)	232, 376
PfeI	GAWTC	2 cut(s)	100, 379
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Psp124BI	GAGCTC	1 cut(s)	25
Psp1406I	AACGTT	1 cut(s)	327
Psp6I	CCWGG	2 cut(s)	29, 425
PspGI	CCWGG	2 cut(s)	29, 425
PstI	CTGCAG	1 cut(s)	136
PsuI	RGATCY	1 cut(s)	406
RsaI	GTAC	2 cut(s)	194, 227
RsaNI	GTAC	2 cut(s)	193, 226
SacI	GAGCTC	1 cut(s)	25
SaqAI	TTAA	1 cut(s)	141
Sau3AI	GATC	1 cut(s)	406
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	2 cut(s)	31, 427
SduI	GDGCHC	1 cut(s)	25
SetI	ASST	7 cut(s)	25, 61, 74, 268, 330, 402, 431
SfcI	CTRYAG	1 cut(s)	132
Sse9I	AATT	1 cut(s)	253
SsiI	CCGC	2 cut(s)	281, 404
SstI	GAGCTC	1 cut(s)	25
StyD4I	CCNGG	2 cut(s)	29, 425
StyI	CCWWGG	2 cut(s)	9, 372
TaaI	ACNGT	1 cut(s)	192
TaiI	ACGT	2 cut(s)	74, 330
TasI	AATT	1 cut(s)	253
TatI	WGTACW	1 cut(s)	225
TfiI	GAWTC	2 cut(s)	100, 379
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TspDTI	ATGAA	4 cut(s)	33, 110, 235, 245
TspGWI	ACGGA	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.