Rorug01G0476200

Adiponectin receptor protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0008678
Physical Location & Seq
Reverse (-)
56594395 .. 56595525
1131 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0476200.1

Sequence Viewer

Length: 1131 bp
ATGGGGTGTTTTCTTGAACTGTTATTGCGTTGCTTCGGGGGTTGCTTTGGGATCCAACATCATGACCGGAGGCGGAGCCCTAAGGCCTCTATGAATGCAAAGGTAAAGGCTTTGGAGCCACGGAAGAAGAAGGAAATCGCAAAGCTCCTTGGTCGTCCTGATCTCATTCACATCGGGACCAATCTTTACGAAGATGTAATATTAGACTGTGATATTGTCATGAACCCTGACCTCATTGAAGTGGAATGTGACTCTCACCTTGATGCTGTGAAAAAGCAAGCCTTGTTTGACCAAGTGATTCTTCCACTACGGAGGCCTGAGCTGTTCTCCCACGGCGGCAAGCTCCTCGGTGGTCCACAGAAAGGAGTCTTGCTCCATGGACCACCGCCGAGTAATACTGGCAAAGCAACATTGCTTGCCACAGCCAAATTTATAGCGAAAGAGTCTGGAGCCGTCTTCATCAATGCAAGGAAGATAGCGAATGTGATCATGAGCAATCGGTTCAGCGATTGTGATTCTGCAGAGAAACGGCAACTCATTGCTGCTGTGTTTAGCCTAGCTTATAAACTCCAGCCTGCTGTCATATTTATTAATGACATGGATAGTTTCTTGGGGCAACTCTCCCAAACCAACATGAAAACTGAGTTCATGGACTTATGGGATTGCTTTTTTACAGACCACAAGCATGAGCATGCTCAAGTACTGGTTCTAGCCACCACTAGTAAATGTAATCGTGCATCACCGGAGCTTGACGAAGCAATACAATGGCGCCTTCCTCGGGTCTTGGAGATTCGGATGCCCCGGAGGAAGGAGAGGGCAGAGATACTAAAGTTGATTTTGAAGGGCGAGAGAGTTGAACACAATATTGATTATGACCACGTAGCTGCATTGACTGAGGGTTACGCAGTTTCAGATCTTTTCCAACTTTGCAAGAAAGCAGCTTACGTTCCTATCAGAGATCATCTACTGTATGAAGAAAAGAGTGGAATTAAACAATCGTCTCCGCCAAGGCCAATGTCACAGTTGGATTTAGAGAACGTACGTGGTGATTGTACAACTTATTCCATACTTGAACAAGTTGTTACAGCAAATGACGACTATATCAGCATTACTGGATCAAACTCACAATGA

Protein Analysis

376

Amino Acids

42.28

Weight (kDa)

7.59

Isoelectric Point (pI)

50.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 123 - 264 3e-09 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 564
AccB1I GGYRCC 1 cut(s) 768
AciI CCGC 4 cut(s) 73, 336, 386, 1004
AclWI GGATC 3 cut(s) 46, 59, 1123
AcsI RAATTY 1 cut(s) 428
AcyI GRCGYC 1 cut(s) 769
AfaI GTAC 3 cut(s) 702, 1041, 1054
AfiI CCNNNNNNNGG 3 cut(s) 362, 778, 808
AgsI TTSAA 5 cut(s) 17, 239, 841, 857, 1073
AhlI ACTAGT 1 cut(s) 719
AjuI GAANNNNNNNTTGG 2 cut(s) 285, 317
AluBI AGCT 7 cut(s) 145, 322, 343, 560, 748, 884, 941
AluI AGCT 7 cut(s) 145, 322, 343, 560, 748, 884, 941
Alw26I GTCTC 1 cut(s) 1005
AlwI GGATC 3 cut(s) 46, 59, 1123
Ama87I CYCGRG 1 cut(s) 777
AoxI GGCC 3 cut(s) 84, 314, 1010
ApeKI GCWGC 3 cut(s) 542, 884, 938
ApoI RAATTY 1 cut(s) 428
AseI ATTAAT 1 cut(s) 591
AspLEI GCGC 1 cut(s) 771
AspS9I GGNCC 3 cut(s) 177, 353, 380
AsuC2I CCSGG 1 cut(s) 802
AsuHPI GGTGA 3 cut(s) 248, 732, 1058
AvaI CYCGRG 1 cut(s) 777
AvaII GGWCC 3 cut(s) 177, 353, 380
AxyI CCTNAGG 1 cut(s) 81
BaeI ACNNNNGTAYC 2 cut(s) 815, 848
BamHI GGATCC 1 cut(s) 51
BanI GGYRCC 1 cut(s) 768
BanII GRGCYC 1 cut(s) 80
BbsI GAAGAC 1 cut(s) 448
BbvI GCAGC 3 cut(s) 529, 871, 950
BceAI ACGGC 3 cut(s) 349, 437, 545
BcgI CGANNNNNNTGC 2 cut(s) 328, 362
BclI TGATCA 1 cut(s) 486
BcnI CCSGG 1 cut(s) 802
BcoDI GTCTC 1 cut(s) 1005
BcuI ACTAGT 1 cut(s) 719
BfaI CTAG 3 cut(s) 557, 710, 720
BfmI CTRYAG 1 cut(s) 519
BfoI RGCGCY 1 cut(s) 772
BglII AGATCT 1 cut(s) 913
BisI GCNGC 4 cut(s) 337, 543, 885, 939
BlsI GCNGC 4 cut(s) 338, 544, 886, 940
BmcAI AGTACT 1 cut(s) 702
Bme1390I CCNGG 1 cut(s) 802
Bme18I GGWCC 3 cut(s) 177, 353, 380
BmeT110I CYCGRG 1 cut(s) 777
BmgT120I GGNCC 3 cut(s) 177, 353, 380
BmiI GGNNCC 6 cut(s) 53, 77, 117, 178, 451, 770
BmrFI CCNGG 1 cut(s) 802
BmsI GCATC 3 cut(s) 253, 746, 786
BpiI GAAGAC 1 cut(s) 448
BplI GAGNNNNNCTC 4 cut(s) 311, 343, 357, 389
BpmI CTGGAG 2 cut(s) 468, 554
Bpu10I CCTNAGC 1 cut(s) 318
BpuEI CTTGAG 1 cut(s) 681
BpuMI CCSGG 1 cut(s) 802
BsaAI YACGTR 2 cut(s) 880, 1043
BsaHI GRCGYC 1 cut(s) 769
BsaJI CCNNGG 8 cut(s) 119, 148, 331, 346, 376, 776, 800, 1007
BsaWI WCCGGW 2 cut(s) 66, 742
Bsc4I CCNNNNNNNGG 3 cut(s) 362, 778, 808
Bse1I ACTGG 3 cut(s) 403, 708, 1117
Bse21I CCTNAGG 1 cut(s) 81
Bse3DI GCAATG 2 cut(s) 410, 537
BseDI CCNNGG 8 cut(s) 119, 148, 331, 346, 376, 776, 800, 1007
BseGI GGATG 1 cut(s) 801
BseLI CCNNNNNNNGG 3 cut(s) 362, 778, 808
BseMI GCAATG 2 cut(s) 410, 537
BseMII CTCAG 3 cut(s) 309, 633, 885
BseNI ACTGG 3 cut(s) 403, 708, 1117
BseRI GAGGAG 1 cut(s) 335
BseXI GCAGC 3 cut(s) 529, 871, 950
BshFI GGCC 3 cut(s) 86, 316, 1012
BshNI GGYRCC 1 cut(s) 768
BsiHKCI CYCGRG 1 cut(s) 777
BsiSI CCGG 3 cut(s) 67, 743, 802
BsiWI CGTACG 1 cut(s) 1039
BslFI GGGAC 1 cut(s) 190
BslI CCNNNNNNNGG 3 cut(s) 362, 778, 808
BsmAI GTCTC 1 cut(s) 1005
BsmBI CGTCTC 1 cut(s) 1005
BsmFI GGGAC 1 cut(s) 190
BsmI GAATGC 1 cut(s) 100
BsnI GGCC 3 cut(s) 86, 316, 1012
BsoBI CYCGRG 1 cut(s) 777
Bsp1286I GDGCHC 1 cut(s) 80
Bsp1407I TGTACA 1 cut(s) 1052
Bsp143I GATC 6 cut(s) 51, 160, 486, 913, 958, 1115
Bsp19I CCATGG 1 cut(s) 376
BspACI CCGC 4 cut(s) 73, 336, 386, 1004
BspANI GGCC 3 cut(s) 86, 316, 1012
BspCNI CTCAG 3 cut(s) 310, 634, 886
BspHI TCATGA 3 cut(s) 61, 219, 489
BspLI GGNNCC 6 cut(s) 53, 77, 117, 178, 451, 770
BspMAI CTGCAG 1 cut(s) 523
BspPI GGATC 3 cut(s) 46, 59, 1123
BspT107I GGYRCC 1 cut(s) 768
BsrDI GCAATG 2 cut(s) 410, 537
BsrGI TGTACA 1 cut(s) 1052
BsrI ACTGG 3 cut(s) 403, 708, 1117
BssECI CCNNGG 8 cut(s) 119, 148, 331, 346, 376, 776, 800, 1007
BssMI GATC 6 cut(s) 51, 160, 486, 913, 958, 1115
BssNI GRCGYC 1 cut(s) 769
BssT1I CCWWGG 3 cut(s) 148, 376, 1007
Bst4CI ACNGT 4 cut(s) 21, 209, 969, 1023
BstACI GRCGYC 1 cut(s) 769
BstAUI TGTACA 1 cut(s) 1052
BstBAI YACGTR 2 cut(s) 880, 1043
BstC8I GCNNGC 5 cut(s) 279, 341, 417, 576, 693
BstDEI CTNAG 4 cut(s) 81, 318, 642, 894
BstDSI CCRYGG 3 cut(s) 119, 331, 376
BstF5I GGATG 1 cut(s) 801
BstH2I RGCGCY 1 cut(s) 772
BstHHI GCGC 1 cut(s) 771
BstKTI GATC 6 cut(s) 54, 163, 489, 916, 961, 1118
BstMAI GTCTC 1 cut(s) 1005
BstMBI GATC 6 cut(s) 51, 160, 486, 913, 958, 1115
BstNSI RCATGY 1 cut(s) 695
BstSCI CCNGG 1 cut(s) 800
BstSFI CTRYAG 1 cut(s) 519
BstV1I GCAGC 3 cut(s) 529, 871, 950
BstV2I GAAGAC 1 cut(s) 448
BstX2I RGATCY 2 cut(s) 51, 913
BstYI RGATCY 2 cut(s) 51, 913
Bsu36I CCTNAGG 1 cut(s) 81
BsuRI GGCC 3 cut(s) 86, 316, 1012
BtgI CCRYGG 3 cut(s) 119, 331, 376
BtsCI GGATG 1 cut(s) 801
Cac8I GCNNGC 5 cut(s) 279, 341, 417, 576, 693
CciI TCATGA 3 cut(s) 61, 219, 489
CfoI GCGC 1 cut(s) 771
Cfr13I GGNCC 3 cut(s) 177, 353, 380
Csp6I GTAC 3 cut(s) 701, 1040, 1053
CviAII CATG 9 cut(s) 62, 220, 377, 490, 598, 634, 649, 686, 692
CviQI GTAC 3 cut(s) 701, 1040, 1053
DdeI CTNAG 4 cut(s) 81, 318, 642, 894
DinI GGCGCC 1 cut(s) 770
DpnI GATC 6 cut(s) 53, 162, 488, 915, 960, 1117
DpnII GATC 6 cut(s) 51, 160, 486, 913, 958, 1115
EciI GGCGGA 2 cut(s) 88, 993
Eco130I CCWWGG 3 cut(s) 148, 376, 1007
Eco147I AGGCCT 2 cut(s) 86, 316
Eco24I GRGCYC 1 cut(s) 80
Eco47I GGWCC 3 cut(s) 177, 353, 380
Eco81I CCTNAGG 1 cut(s) 81
Eco88I CYCGRG 1 cut(s) 777
EcoT14I CCWWGG 3 cut(s) 148, 376, 1007
EcoT38I GRGCYC 1 cut(s) 80
EgeI GGCGCC 1 cut(s) 770
EheI GGCGCC 1 cut(s) 770
ErhI CCWWGG 3 cut(s) 148, 376, 1007
Esp3I CGTCTC 1 cut(s) 1005
FaeI CATG 9 cut(s) 65, 223, 380, 493, 601, 637, 652, 689, 695
FalI AAGNNNNNCTT 4 cut(s) 266, 298, 285, 317
FaqI GGGAC 1 cut(s) 190
FatI CATG 9 cut(s) 61, 219, 376, 489, 597, 633, 648, 685, 691
FbaI TGATCA 1 cut(s) 486
Fnu4HI GCNGC 4 cut(s) 337, 543, 885, 939
FokI GGATG 1 cut(s) 808
FriOI GRGCYC 1 cut(s) 80
Fsp4HI GCNGC 4 cut(s) 337, 543, 885, 939
FspBI CTAG 3 cut(s) 557, 710, 720
GlaI GCGC 1 cut(s) 770
GluI GCNGC 4 cut(s) 337, 543, 885, 939
GsuI CTGGAG 2 cut(s) 468, 554
HaeII RGCGCY 1 cut(s) 772
HaeIII GGCC 3 cut(s) 86, 316, 1012
HapII CCGG 3 cut(s) 67, 743, 802
HhaI GCGC 1 cut(s) 771
Hin1I GRCGYC 1 cut(s) 769
Hin1II CATG 9 cut(s) 65, 223, 380, 493, 601, 637, 652, 689, 695
Hin6I GCGC 1 cut(s) 769
HinP1I GCGC 1 cut(s) 769
HinfI GANTC 6 cut(s) 251, 298, 366, 443, 515, 790
HpaII CCGG 3 cut(s) 67, 743, 802
HphI GGTGA 3 cut(s) 248, 732, 1058
Hpy166II GTNNAC 1 cut(s) 356
Hpy188I TCNGA 3 cut(s) 795, 913, 956
Hpy188III TCNNGA 7 cut(s) 14, 62, 158, 175, 220, 447, 490
Hpy8I GTNNAC 1 cut(s) 356
HpyAV CCTTC 4 cut(s) 124, 782, 802, 835
HpyCH4III ACNGT 4 cut(s) 21, 209, 969, 1023
HpyCH4IV ACGT 4 cut(s) 879, 945, 1038, 1042
HpyCH4V TGCA 6 cut(s) 98, 467, 521, 737, 887, 930
HpyF3I CTNAG 4 cut(s) 81, 318, 642, 894
HpySE526I ACGT 4 cut(s) 879, 945, 1038, 1042
Hsp92I GRCGYC 1 cut(s) 769
Hsp92II CATG 9 cut(s) 65, 223, 380, 493, 601, 637, 652, 689, 695
HspAI GCGC 1 cut(s) 769
KasI GGCGCC 1 cut(s) 768
Ksp22I TGATCA 1 cut(s) 486
Kzo9I GATC 6 cut(s) 51, 160, 486, 913, 958, 1115
LmnI GCTCC 7 cut(s) 75, 115, 150, 348, 378, 449, 745
Lsp1109I GCAGC 3 cut(s) 529, 871, 950
LweI GCATC 3 cut(s) 253, 746, 786
MaeI CTAG 3 cut(s) 557, 710, 720
MaeII ACGT 4 cut(s) 879, 945, 1038, 1042
MaeIII GTNAC 4 cut(s) 248, 899, 1017, 1081
MalI GATC 6 cut(s) 53, 162, 488, 915, 960, 1117
MboI GATC 6 cut(s) 51, 160, 486, 913, 958, 1115
MboII GAAGA 7 cut(s) 136, 139, 203, 293, 448, 484, 986
MflI RGATCY 2 cut(s) 51, 913
MhlI GDGCHC 1 cut(s) 80
MluCI AATT 2 cut(s) 428, 987
Mly113I GGCGCC 1 cut(s) 769
MlyI GAGTC 3 cut(s) 245, 375, 452
MmeI TCCRAC 3 cut(s) 79, 946, 1005
MnlI CCTC 9 cut(s) 63, 97, 242, 306, 356, 786, 798, 807, 889
MseI TTAA 2 cut(s) 591, 990
MslI CAYNNNNRTG 4 cut(s) 239, 261, 684, 690
MspI CCGG 3 cut(s) 67, 743, 802
MspR9I CCNGG 1 cut(s) 802
Mva1269I GAATGC 1 cut(s) 100
NarI GGCGCC 1 cut(s) 769
NciI CCSGG 1 cut(s) 802
NcoI CCATGG 1 cut(s) 376
NdeII GATC 6 cut(s) 51, 160, 486, 913, 958, 1115
NlaIII CATG 9 cut(s) 65, 223, 380, 493, 601, 637, 652, 689, 695
NlaIV GGNNCC 6 cut(s) 53, 77, 117, 178, 451, 770
NmeAIII GCCGAG 1 cut(s) 414
NmuCI GTSAC 2 cut(s) 248, 1017
NspI RCATGY 1 cut(s) 695
PaeI GCATGC 1 cut(s) 695
PagI TCATGA 3 cut(s) 61, 219, 489
PceI AGGCCT 2 cut(s) 86, 316
PctI GAATGC 1 cut(s) 100
PfeI GAWTC 3 cut(s) 298, 515, 790
Pfl23II CGTACG 1 cut(s) 1039
PkrI GCNGC 4 cut(s) 338, 544, 886, 940
PleI GAGTC 3 cut(s) 245, 374, 451
PluTI GGCGCC 1 cut(s) 772
PpsI GAGTC 3 cut(s) 245, 374, 451
Ppu21I YACGTR 2 cut(s) 880, 1043
PshBI ATTAAT 1 cut(s) 591
PsiI TTATAA 1 cut(s) 564
PspLI CGTACG 1 cut(s) 1039
PspN4I GGNNCC 6 cut(s) 53, 77, 117, 178, 451, 770
PspPI GGNCC 3 cut(s) 177, 353, 380
PstI CTGCAG 1 cut(s) 523
PsuI RGATCY 2 cut(s) 51, 913
RsaI GTAC 3 cut(s) 702, 1041, 1054
RsaNI GTAC 3 cut(s) 701, 1040, 1053
RseI CAYNNNNRTG 4 cut(s) 239, 261, 684, 690
SaqAI TTAA 2 cut(s) 591, 990
SatI GCNGC 4 cut(s) 337, 543, 885, 939
Sau3AI GATC 6 cut(s) 51, 160, 486, 913, 958, 1115
Sau96I GGNCC 3 cut(s) 177, 353, 380
ScaI AGTACT 1 cut(s) 702
SchI GAGTC 3 cut(s) 245, 375, 452
ScrFI CCNGG 1 cut(s) 802
SduI GDGCHC 1 cut(s) 80
SfaNI GCATC 3 cut(s) 253, 746, 786
SfcI CTRYAG 1 cut(s) 519
SfoI GGCGCC 1 cut(s) 770
SinI GGWCC 3 cut(s) 177, 353, 380
SmiMI CAYNNNNRTG 4 cut(s) 239, 261, 684, 690
SmlI CTYRAG 1 cut(s) 696
SmoI CTYRAG 1 cut(s) 696
SpeI ACTAGT 1 cut(s) 719
SphI GCATGC 1 cut(s) 695
Sse9I AATT 2 cut(s) 428, 987
SseBI AGGCCT 2 cut(s) 86, 316
SsiI CCGC 4 cut(s) 73, 336, 386, 1004
SspDI GGCGCC 1 cut(s) 768
SspI AATATT 2 cut(s) 201, 865
SspMI CTAG 3 cut(s) 557, 710, 720
StuI AGGCCT 2 cut(s) 86, 316
StyD4I CCNGG 1 cut(s) 800
StyI CCWWGG 3 cut(s) 148, 376, 1007
TaaI ACNGT 4 cut(s) 21, 209, 969, 1023
TaiI ACGT 4 cut(s) 882, 948, 1041, 1045
TasI AATT 2 cut(s) 428, 987
TatI WGTACW 2 cut(s) 700, 1052
TauI GCSGC 1 cut(s) 339
TfiI GAWTC 3 cut(s) 298, 515, 790
Tru1I TTAA 2 cut(s) 591, 990
Tru9I TTAA 2 cut(s) 591, 990
TseFI GTSAC 2 cut(s) 248, 1017
TseI GCWGC 3 cut(s) 542, 884, 938
Tsp45I GTSAC 2 cut(s) 248, 1017
TspDTI ATGAA 6 cut(s) 107, 236, 448, 637, 650, 987
TspGWI ACGGA 2 cut(s) 136, 325
VpaK11BI GGWCC 3 cut(s) 177, 353, 380
VspI ATTAAT 1 cut(s) 591
XapI RAATTY 1 cut(s) 428
XceI RCATGY 1 cut(s) 695
XspI CTAG 3 cut(s) 557, 710, 720
ZrmI AGTACT 1 cut(s) 702
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.