FvH4_1g02630

UDP-sugar transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0009640
Physical Location & Seq
Forward (+)
1481615 .. 1485821
4207 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g02630.t1

Sequence Viewer

Length: 966 bp
ATGGAGTCAGAGAAGAACCAGAAAGATCCGGCTATGACCAAGAAAGGAGCTTATGCTGCCATTTCTTATATGGCCTCCGCAGTTCTCTTGATAATGTTCAATAAAGCAGCCCTCTCTTCATACAATTTCCAATCTGCAAATGTCATCACTCTTTTTCAGATGATATCGTCTTGTGCATTGCTGTATGCAATGAATTGCTGGAAGATCATTTCTTTCACAGTTGAGCCACATAGCACTACAAACAATCCAGTTACCCTTGTGCCATTGAAGAAGTTGGTTCATACTCTTCCTCTCGCGGTGTCTTATTTGCTTTACATGTTGGTTACAATGGAATCAGTCCGTGGTATAAGTGTTCCCATGTACACCACCCTCAGACGAACCACTGTAGCTTTTACAATGGTCATTGAGTATCTTTTGACCGGGCAGAAACATTCATATCGTGTTTTAGGCAGTGTGGGGATAATTATTATGGGTGCATTTTGTGCCGGAGCTCGGGATTTGTCTTTTGATGCCTATGGCTATGCTGTTGTTTTTGTTGCAAACATCTGTACAGCAATATATCTTGCTTCTATAGCTCATATTGGCAAGTCTAGTGGTCTCAGTACCTTTGGCTTAATGTGGTGCAATGGAATAATATGTGGACCAGTCTTGCTGTTTTGGACATCAATCAGAGGTGATTTAACAGGGATGATGAATTTCCCGGATCTATTCTCCCCTGGTTTTCAGGCTGTGATGCTTCTTTCCTGTGTTATGGCTTTTTCAATAAATTATTGCGTATTTTGGAATACAACCCTCAATTCAGCTCTCACACAGACAATTTGTGGTAATCTGAAGGATCTTCTGACTATTGGACTTGGCTGGTTGCTATTTGGAGGGCTTCCATTTAATTTGTTAAATGTTGCTGGCCAATCTCTTGGTTTTCTTGGGTCCTGCTTGTATGCTTACTGTAAACTCAGAGGGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

322

Amino Acids

35.05

Weight (kDa)

8.91

Isoelectric Point (pI)

34.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 17 - 313 3.4e-12 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 296
AciI CCGC 2 cut(s) 78, 296
AclWI GGATC 3 cut(s) 20, 711, 843
AcoI YGGCCR 1 cut(s) 904
AcsI RAATTY 1 cut(s) 694
AcuI CTGAAG 1 cut(s) 851
AfaI GTAC 3 cut(s) 362, 550, 604
AfiI CCNNNNNNNGG 1 cut(s) 492
AflIII ACRYGT 1 cut(s) 315
AgsI TTSAA 3 cut(s) 100, 268, 762
AjnI CCWGG 1 cut(s) 715
AluBI AGCT 5 cut(s) 50, 389, 491, 575, 803
AluI AGCT 5 cut(s) 50, 389, 491, 575, 803
Alw21I GWGCWC 1 cut(s) 493
Alw26I GTCTC 1 cut(s) 602
AlwI GGATC 3 cut(s) 20, 711, 843
Ama87I CYCGRG 1 cut(s) 492
AoxI GGCC 2 cut(s) 72, 904
ApeKI GCWGC 2 cut(s) 56, 107
ApoI RAATTY 1 cut(s) 694
AspS9I GGNCC 2 cut(s) 641, 927
AsuC2I CCSGG 2 cut(s) 421, 701
AsuHPI GGTGA 1 cut(s) 686
AvaI CYCGRG 1 cut(s) 492
AvaII GGWCC 2 cut(s) 641, 927
BalI TGGCCA 1 cut(s) 906
BanII GRGCYC 1 cut(s) 493
Bbv12I GWGCWC 1 cut(s) 493
BbvI GCAGC 2 cut(s) 43, 119
BciT130I CCWGG 1 cut(s) 717
BcnI CCSGG 2 cut(s) 421, 701
BcoDI GTCTC 1 cut(s) 602
BfaI CTAG 1 cut(s) 591
BfmI CTRYAG 2 cut(s) 384, 570
BisI GCNGC 2 cut(s) 57, 108
BlsI GCNGC 2 cut(s) 58, 109
Bme1390I CCNGG 3 cut(s) 421, 701, 717
Bme18I GGWCC 2 cut(s) 641, 927
BmeT110I CYCGRG 1 cut(s) 492
BmgT120I GGNCC 2 cut(s) 641, 927
BmiI GGNNCC 1 cut(s) 928
BmrFI CCNGG 3 cut(s) 421, 701, 717
BmsI GCATC 2 cut(s) 499, 723
BpuMI CCSGG 2 cut(s) 421, 701
BsaI GGTCTC 1 cut(s) 602
BsaJI CCNNGG 2 cut(s) 340, 715
Bsc4I CCNNNNNNNGG 1 cut(s) 492
Bse1I ACTGG 2 cut(s) 248, 644
Bse3DI GCAATG 3 cut(s) 176, 195, 631
BseBI CCWGG 1 cut(s) 717
BseDI CCNNGG 2 cut(s) 340, 715
BseGI GGATG 1 cut(s) 693
BseLI CCNNNNNNNGG 1 cut(s) 492
BseMI GCAATG 3 cut(s) 176, 195, 631
BseMII CTCAG 2 cut(s) 385, 613
BseNI ACTGG 2 cut(s) 248, 644
BseXI GCAGC 2 cut(s) 43, 119
Bsh1236I CGCG 1 cut(s) 296
BshFI GGCC 2 cut(s) 74, 906
BsiHKAI GWGCWC 1 cut(s) 493
BsiHKCI CYCGRG 1 cut(s) 492
BsiSI CCGG 4 cut(s) 29, 420, 486, 701
BslI CCNNNNNNNGG 1 cut(s) 492
BsmAI GTCTC 1 cut(s) 602
BsnI GGCC 2 cut(s) 74, 906
Bso31I GGTCTC 1 cut(s) 602
BsoBI CYCGRG 1 cut(s) 492
Bsp1286I GDGCHC 1 cut(s) 493
Bsp1407I TGTACA 2 cut(s) 360, 548
Bsp143I GATC 4 cut(s) 25, 204, 703, 835
BspACI CCGC 2 cut(s) 78, 296
BspANI GGCC 2 cut(s) 74, 906
BspCNI CTCAG 3 cut(s) 384, 612, 966
BspFNI CGCG 1 cut(s) 296
BspLI GGNNCC 1 cut(s) 928
BspPI GGATC 3 cut(s) 20, 711, 843
BspTNI GGTCTC 1 cut(s) 602
BsrDI GCAATG 3 cut(s) 176, 195, 631
BsrGI TGTACA 2 cut(s) 360, 548
BsrI ACTGG 2 cut(s) 248, 644
BssECI CCNNGG 2 cut(s) 340, 715
BssMI GATC 4 cut(s) 25, 204, 703, 835
Bst2UI CCWGG 1 cut(s) 717
Bst4CI ACNGT 3 cut(s) 220, 385, 947
Bst6I CTCTTC 2 cut(s) 121, 291
BstAPI GCANNNNNTGC 1 cut(s) 482
BstAUI TGTACA 2 cut(s) 360, 548
BstC8I GCNNGC 1 cut(s) 904
BstDEI CTNAG 3 cut(s) 371, 599, 953
BstDSI CCRYGG 1 cut(s) 340
BstF5I GGATG 1 cut(s) 693
BstFNI CGCG 1 cut(s) 296
BstKTI GATC 4 cut(s) 28, 207, 706, 838
BstMAI GTCTC 1 cut(s) 602
BstMBI GATC 4 cut(s) 25, 204, 703, 835
BstMWI GCNNNNNNNGC 3 cut(s) 56, 482, 572
BstNI CCWGG 1 cut(s) 717
BstNSI RCATGY 1 cut(s) 319
BstSCI CCNGG 3 cut(s) 419, 699, 715
BstSFI CTRYAG 2 cut(s) 384, 570
BstUI CGCG 1 cut(s) 296
BstV1I GCAGC 2 cut(s) 43, 119
BstX2I RGATCY 3 cut(s) 25, 703, 835
BstXI CCANNNNNNTGG 1 cut(s) 914
BstYI RGATCY 3 cut(s) 25, 703, 835
BsuRI GGCC 2 cut(s) 74, 906
BtgI CCRYGG 1 cut(s) 340
BtsCI GGATG 1 cut(s) 693
BtsI GCAGTG 1 cut(s) 457
BtsIMutI CAGTG 2 cut(s) 381, 457
Cac8I GCNNGC 1 cut(s) 904
Cfr13I GGNCC 2 cut(s) 641, 927
Csp6I GTAC 3 cut(s) 361, 549, 603
CspCI CAANNNNNGTGG 2 cut(s) 574, 609
CviAII CATG 2 cut(s) 316, 358
CviQI GTAC 3 cut(s) 361, 549, 603
DdeI CTNAG 3 cut(s) 371, 599, 953
DpnI GATC 4 cut(s) 27, 206, 705, 837
DpnII GATC 4 cut(s) 25, 204, 703, 835
EaeI YGGCCR 1 cut(s) 904
Eam1104I CTCTTC 2 cut(s) 121, 291
EarI CTCTTC 2 cut(s) 121, 291
Ecl136II GAGCTC 1 cut(s) 491
Eco24I GRGCYC 1 cut(s) 493
Eco31I GGTCTC 1 cut(s) 602
Eco32I GATATC 1 cut(s) 165
Eco47I GGWCC 2 cut(s) 641, 927
Eco53kI GAGCTC 1 cut(s) 491
Eco57I CTGAAG 1 cut(s) 851
Eco88I CYCGRG 1 cut(s) 492
EcoICRI GAGCTC 1 cut(s) 491
EcoO109I RGGNCCY 1 cut(s) 927
EcoRII CCWGG 1 cut(s) 715
EcoRV GATATC 1 cut(s) 165
EcoT38I GRGCYC 1 cut(s) 493
FaeI CATG 2 cut(s) 319, 361
FatI CATG 2 cut(s) 315, 357
Fnu4HI GCNGC 2 cut(s) 57, 108
FokI GGATG 1 cut(s) 700
FriOI GRGCYC 1 cut(s) 493
Fsp4HI GCNGC 2 cut(s) 57, 108
FspBI CTAG 1 cut(s) 591
GluI GCNGC 2 cut(s) 57, 108
HaeIII GGCC 2 cut(s) 74, 906
HapII CCGG 4 cut(s) 29, 420, 486, 701
Hin1II CATG 2 cut(s) 319, 361
HinfI GANTC 2 cut(s) 5, 332
HpaII CCGG 4 cut(s) 29, 420, 486, 701
HphI GGTGA 1 cut(s) 686
Hpy166II GTNNAC 3 cut(s) 363, 641, 950
Hpy188I TCNGA 7 cut(s) 10, 159, 374, 671, 831, 843, 956
Hpy188III TCNNGA 2 cut(s) 88, 494
Hpy8I GTNNAC 3 cut(s) 363, 641, 950
HpyAV CCTTC 1 cut(s) 826
HpyCH4III ACNGT 3 cut(s) 220, 385, 947
HpyCH4V TGCA 6 cut(s) 137, 176, 188, 476, 539, 624
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 482, 572
HpyF3I CTNAG 3 cut(s) 371, 599, 953
Hsp92II CATG 2 cut(s) 319, 361
Kzo9I GATC 4 cut(s) 25, 204, 703, 835
LmnI GCTCC 2 cut(s) 47, 488
Lsp1109I GCAGC 2 cut(s) 43, 119
LweI GCATC 2 cut(s) 499, 723
MaeI CTAG 1 cut(s) 591
MaeIII GTNAC 2 cut(s) 250, 322
MalI GATC 4 cut(s) 27, 206, 705, 837
MboI GATC 4 cut(s) 25, 204, 703, 835
MboII GAAGA 6 cut(s) 25, 108, 214, 278, 280, 830
MflI RGATCY 3 cut(s) 25, 703, 835
MhlI GDGCHC 1 cut(s) 493
MlsI TGGCCA 1 cut(s) 906
MluCI AATT 8 cut(s) 124, 193, 462, 694, 766, 796, 816, 886
MluNI TGGCCA 1 cut(s) 906
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 8 cut(s) 85, 122, 300, 380, 665, 803, 866, 950
Mox20I TGGCCA 1 cut(s) 906
MscI TGGCCA 1 cut(s) 906
MseI TTAA 4 cut(s) 614, 680, 885, 893
Msp20I TGGCCA 1 cut(s) 906
MspI CCGG 4 cut(s) 29, 420, 486, 701
MspR9I CCNGG 3 cut(s) 421, 701, 717
MvaI CCWGG 1 cut(s) 717
MvnI CGCG 1 cut(s) 296
MwoI GCNNNNNNNGC 3 cut(s) 56, 482, 572
NciI CCSGG 2 cut(s) 421, 701
NdeII GATC 4 cut(s) 25, 204, 703, 835
NlaIII CATG 2 cut(s) 319, 361
NlaIV GGNNCC 1 cut(s) 928
NspI RCATGY 1 cut(s) 319
PciI ACATGT 1 cut(s) 315
PfeI GAWTC 1 cut(s) 332
PfoI TCCNGGA 1 cut(s) 699
PkrI GCNGC 2 cut(s) 58, 109
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PpuMI RGGWCCY 1 cut(s) 927
PscI ACATGT 1 cut(s) 315
Psp124BI GAGCTC 1 cut(s) 493
Psp5II RGGWCCY 1 cut(s) 927
Psp6I CCWGG 1 cut(s) 715
PspGI CCWGG 1 cut(s) 715
PspN4I GGNNCC 1 cut(s) 928
PspPI GGNCC 2 cut(s) 641, 927
PspPPI RGGWCCY 1 cut(s) 927
PsuI RGATCY 3 cut(s) 25, 703, 835
RsaI GTAC 3 cut(s) 362, 550, 604
RsaNI GTAC 3 cut(s) 361, 549, 603
SacI GAGCTC 1 cut(s) 493
SaqAI TTAA 4 cut(s) 614, 680, 885, 893
SatI GCNGC 2 cut(s) 57, 108
Sau3AI GATC 4 cut(s) 25, 204, 703, 835
Sau96I GGNCC 2 cut(s) 641, 927
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 3 cut(s) 421, 701, 717
SduI GDGCHC 1 cut(s) 493
SetI ASST 7 cut(s) 52, 391, 493, 577, 608, 676, 805
SfaNI GCATC 2 cut(s) 499, 723
SfcI CTRYAG 2 cut(s) 384, 570
SinI GGWCC 2 cut(s) 641, 927
Sse9I AATT 8 cut(s) 124, 193, 462, 694, 766, 796, 816, 886
SsiI CCGC 2 cut(s) 78, 296
SspMI CTAG 1 cut(s) 591
SstI GAGCTC 1 cut(s) 493
StyD4I CCNGG 3 cut(s) 419, 699, 715
TaaI ACNGT 3 cut(s) 220, 385, 947
TasI AATT 8 cut(s) 124, 193, 462, 694, 766, 796, 816, 886
TatI WGTACW 2 cut(s) 360, 548
TfiI GAWTC 1 cut(s) 332
Tru1I TTAA 4 cut(s) 614, 680, 885, 893
Tru9I TTAA 4 cut(s) 614, 680, 885, 893
TscAI CASTG 2 cut(s) 388, 457
TseI GCWGC 2 cut(s) 56, 107
TspDTI ATGAA 5 cut(s) 108, 206, 269, 423, 707
TspGWI ACGGA 1 cut(s) 329
TspRI CASTG 2 cut(s) 388, 457
VpaK11BI GGWCC 2 cut(s) 641, 927
XapI RAATTY 1 cut(s) 694
XceI RCATGY 1 cut(s) 319
XcmI CCANNNNNNNNNTGG 1 cut(s) 67
XspI CTAG 1 cut(s) 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.