Rh2BG031100

UDP-sugar transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0009640
Physical Location & Seq
Forward (+)
2068470 .. 2072587
4118 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG031100.1

Sequence Viewer

Length: 783 bp
ATGGTATCGTCATGTGCATTGCTGTATGCAATGAAATACTGGAAGATTATTTCTTTCACAGTCGAGCCACATAGCACTACGAACAATCCAGTTAACCTTGTACCATTGCAGACGTTGGTACACACTCTTCCTCTCGCGATGTCTTATTTGCTTTACATGTTGGTTACAATGGAATCAGTCCGTGGTATAAATGTTCCCATGTACACCACCCTTAGACGAACCACTATAGCTTTTACAATGATCGTTGAGTATATTTTGACGGGGCAGAAACATTCATATCGTGTTTTGGGCAGTGTGGGGATAATTATACTGGGTGCATTTATTGCTGGAGCTCGGGATCTGTCATTTGATGCCTATGGCTATGCTGTTGTCTTTGTTGCAAACATCTCTACAGCAATATATCTTGCTTCTATAGCTCATATTGGTAAATCAAGTGGTCTTAGTACGTTTGGCTTAATGTGGTGCAATGGAATAATATGTGGACCGGTCTTGCTGTTTTGGACATCAATCAGAGGTGATCTAACAGGGATGATGAACTTCTCACATATACTCTCCCCTGGTTTTCAGGCCGTGATGCTTCTTTCCTGTGTTATGGCTTTTTCAATAAATTATTGCGTGTTTTGGAATACAACCCTCAATTCAGCTCTCACACAGACAATTTGTGGTAATCTGAAGGATCTTCTGACTATTGGACTTGGCTGGTTGCTATTTGGAGGACTTACATTTGATTTGAGGGAAATAAGTGGCTGCGTAAGGTTCTTCCTTCATCGGGGAGATACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

260

Amino Acids

28.65

Weight (kDa)

8.69

Isoelectric Point (pI)

31.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 31 - 238 1.6e-08 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 137
AclWI GGATC 2 cut(s) 345, 684
AcuI CTGAAG 1 cut(s) 692
AfaI GTAC 4 cut(s) 102, 120, 203, 445
AfiI CCNNNNNNNGG 1 cut(s) 769
AflIII ACRYGT 1 cut(s) 156
AgeI ACCGGT 1 cut(s) 484
AgsI TTSAA 1 cut(s) 603
AjnI CCWGG 1 cut(s) 556
AluBI AGCT 4 cut(s) 230, 332, 416, 644
AluI AGCT 4 cut(s) 230, 332, 416, 644
Alw21I GWGCWC 1 cut(s) 334
AlwI GGATC 2 cut(s) 345, 684
Ama87I CYCGRG 1 cut(s) 333
AoxI GGCC 1 cut(s) 567
ApeKI GCWGC 1 cut(s) 747
AsiGI ACCGGT 1 cut(s) 484
AspS9I GGNCC 1 cut(s) 482
AsuHPI GGTGA 1 cut(s) 527
AvaI CYCGRG 1 cut(s) 333
AvaII GGWCC 1 cut(s) 482
BanII GRGCYC 1 cut(s) 334
BarI GAAGNNNNNNTAC 2 cut(s) 111, 143
Bbv12I GWGCWC 1 cut(s) 334
BbvI GCAGC 1 cut(s) 734
BceAI ACGGC 1 cut(s) 554
BciT130I CCWGG 1 cut(s) 558
BfmI CTRYAG 3 cut(s) 225, 390, 411
BisI GCNGC 1 cut(s) 748
BlsI GCNGC 1 cut(s) 749
Bme1390I CCNGG 1 cut(s) 558
Bme18I GGWCC 1 cut(s) 482
BmeT110I CYCGRG 1 cut(s) 333
BmgT120I GGNCC 1 cut(s) 482
BmrFI CCNGG 1 cut(s) 558
BmrI ACTGGG 1 cut(s) 320
BmsI GCATC 2 cut(s) 340, 564
BmuI ACTGGG 1 cut(s) 320
BpmI CTGGAG 1 cut(s) 348
BsaJI CCNNGG 2 cut(s) 181, 556
BsaWI WCCGGW 1 cut(s) 484
Bsc4I CCNNNNNNNGG 1 cut(s) 769
Bse118I RCCGGY 1 cut(s) 484
Bse1I ACTGG 3 cut(s) 44, 89, 315
Bse3DI GCAATG 4 cut(s) 17, 36, 104, 472
BseBI CCWGG 1 cut(s) 558
BseDI CCNNGG 2 cut(s) 181, 556
BseGI GGATG 1 cut(s) 534
BseLI CCNNNNNNNGG 1 cut(s) 769
BseMI GCAATG 4 cut(s) 17, 36, 104, 472
BseNI ACTGG 3 cut(s) 44, 89, 315
BseXI GCAGC 1 cut(s) 734
Bsh1236I CGCG 1 cut(s) 137
BshFI GGCC 1 cut(s) 569
BshTI ACCGGT 1 cut(s) 484
BsiHKAI GWGCWC 1 cut(s) 334
BsiHKCI CYCGRG 1 cut(s) 333
BsiSI CCGG 1 cut(s) 485
BslI CCNNNNNNNGG 1 cut(s) 769
BsnI GGCC 1 cut(s) 569
BsoBI CYCGRG 1 cut(s) 333
Bsp1286I GDGCHC 1 cut(s) 334
Bsp1407I TGTACA 1 cut(s) 201
Bsp143I GATC 4 cut(s) 240, 337, 517, 676
Bsp68I TCGCGA 1 cut(s) 137
BspANI GGCC 1 cut(s) 569
BspFNI CGCG 1 cut(s) 137
BspPI GGATC 2 cut(s) 345, 684
BsrDI GCAATG 4 cut(s) 17, 36, 104, 472
BsrFI RCCGGY 1 cut(s) 484
BsrGI TGTACA 1 cut(s) 201
BsrI ACTGG 3 cut(s) 44, 89, 315
BssAI RCCGGY 1 cut(s) 484
BssECI CCNNGG 2 cut(s) 181, 556
BssMI GATC 4 cut(s) 240, 337, 517, 676
Bst2UI CCWGG 1 cut(s) 558
Bst4CI ACNGT 1 cut(s) 61
Bst6I CTCTTC 1 cut(s) 132
BstAPI GCANNNNNTGC 1 cut(s) 323
BstAUI TGTACA 1 cut(s) 201
BstDEI CTNAG 2 cut(s) 212, 440
BstDSI CCRYGG 1 cut(s) 181
BstF5I GGATG 1 cut(s) 534
BstFNI CGCG 1 cut(s) 137
BstKTI GATC 4 cut(s) 243, 340, 520, 679
BstMBI GATC 4 cut(s) 240, 337, 517, 676
BstMWI GCNNNNNNNGC 2 cut(s) 323, 413
BstNI CCWGG 1 cut(s) 558
BstNSI RCATGY 1 cut(s) 160
BstSCI CCNGG 1 cut(s) 556
BstSFI CTRYAG 3 cut(s) 225, 390, 411
BstUI CGCG 1 cut(s) 137
BstV1I GCAGC 1 cut(s) 734
BstX2I RGATCY 2 cut(s) 337, 676
BstYI RGATCY 2 cut(s) 337, 676
BsuRI GGCC 1 cut(s) 569
BtgI CCRYGG 1 cut(s) 181
BtgZI GCGATG 1 cut(s) 152
BtsCI GGATG 1 cut(s) 534
BtsI GCAGTG 1 cut(s) 298
BtsIMutI CAGTG 1 cut(s) 298
BtuMI TCGCGA 1 cut(s) 137
Cfr10I RCCGGY 1 cut(s) 484
Cfr13I GGNCC 1 cut(s) 482
Csp6I GTAC 4 cut(s) 101, 119, 202, 444
CspAI ACCGGT 1 cut(s) 484
CviAII CATG 3 cut(s) 12, 157, 199
CviQI GTAC 4 cut(s) 101, 119, 202, 444
DdeI CTNAG 2 cut(s) 212, 440
DpnI GATC 4 cut(s) 242, 339, 519, 678
DpnII GATC 4 cut(s) 240, 337, 517, 676
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Ecl136II GAGCTC 1 cut(s) 332
Eco24I GRGCYC 1 cut(s) 334
Eco47I GGWCC 1 cut(s) 482
Eco53kI GAGCTC 1 cut(s) 332
Eco57I CTGAAG 1 cut(s) 692
Eco88I CYCGRG 1 cut(s) 333
EcoICRI GAGCTC 1 cut(s) 332
EcoRII CCWGG 1 cut(s) 556
EcoT38I GRGCYC 1 cut(s) 334
FaeI CATG 3 cut(s) 15, 160, 202
FatI CATG 3 cut(s) 11, 156, 198
Fnu4HI GCNGC 1 cut(s) 748
FokI GGATG 1 cut(s) 541
FriOI GRGCYC 1 cut(s) 334
Fsp4HI GCNGC 1 cut(s) 748
GluI GCNGC 1 cut(s) 748
GsuI CTGGAG 1 cut(s) 348
HaeIII GGCC 1 cut(s) 569
HapII CCGG 1 cut(s) 485
Hin1II CATG 3 cut(s) 15, 160, 202
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HinfI GANTC 1 cut(s) 173
HpaI GTTAAC 1 cut(s) 94
HpaII CCGG 1 cut(s) 485
HphI GGTGA 1 cut(s) 527
Hpy166II GTNNAC 4 cut(s) 94, 121, 204, 482
Hpy188I TCNGA 3 cut(s) 512, 672, 684
Hpy188III TCNNGA 2 cut(s) 136, 335
Hpy8I GTNNAC 4 cut(s) 94, 121, 204, 482
HpyAV CCTTC 2 cut(s) 667, 773
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4IV ACGT 2 cut(s) 113, 446
HpyCH4V TGCA 6 cut(s) 17, 29, 109, 317, 380, 465
HpyF10VI GCNNNNNNNGC 2 cut(s) 323, 413
HpyF3I CTNAG 2 cut(s) 212, 440
HpySE526I ACGT 2 cut(s) 113, 446
Hsp92II CATG 3 cut(s) 15, 160, 202
KspAI GTTAAC 1 cut(s) 94
Kzo9I GATC 4 cut(s) 240, 337, 517, 676
LmnI GCTCC 1 cut(s) 329
Lsp1109I GCAGC 1 cut(s) 734
LweI GCATC 2 cut(s) 340, 564
MaeII ACGT 2 cut(s) 113, 446
MaeIII GTNAC 1 cut(s) 163
MalI GATC 4 cut(s) 242, 339, 519, 678
MboI GATC 4 cut(s) 240, 337, 517, 676
MboII GAAGA 4 cut(s) 55, 119, 671, 751
MflI RGATCY 2 cut(s) 337, 676
MhlI GDGCHC 1 cut(s) 334
MluCI AATT 4 cut(s) 303, 607, 637, 657
MnlI CCTC 5 cut(s) 141, 506, 644, 707, 726
MseI TTAA 2 cut(s) 93, 455
MspI CCGG 1 cut(s) 485
MspR9I CCNGG 1 cut(s) 558
MvaI CCWGG 1 cut(s) 558
MvnI CGCG 1 cut(s) 137
MwoI GCNNNNNNNGC 2 cut(s) 323, 413
NdeII GATC 4 cut(s) 240, 337, 517, 676
NlaIII CATG 3 cut(s) 15, 160, 202
NruI TCGCGA 1 cut(s) 137
NspI RCATGY 1 cut(s) 160
PciI ACATGT 1 cut(s) 156
PfeI GAWTC 1 cut(s) 173
PinAI ACCGGT 1 cut(s) 484
PkrI GCNGC 1 cut(s) 749
PscI ACATGT 1 cut(s) 156
Psp124BI GAGCTC 1 cut(s) 334
Psp6I CCWGG 1 cut(s) 556
PspGI CCWGG 1 cut(s) 556
PspPI GGNCC 1 cut(s) 482
PsuI RGATCY 2 cut(s) 337, 676
RruI TCGCGA 1 cut(s) 137
RsaI GTAC 4 cut(s) 102, 120, 203, 445
RsaNI GTAC 4 cut(s) 101, 119, 202, 444
SacI GAGCTC 1 cut(s) 334
SaqAI TTAA 2 cut(s) 93, 455
SatI GCNGC 1 cut(s) 748
Sau3AI GATC 4 cut(s) 240, 337, 517, 676
Sau96I GGNCC 1 cut(s) 482
ScrFI CCNGG 1 cut(s) 558
SduI GDGCHC 1 cut(s) 334
SetI ASST 9 cut(s) 99, 116, 232, 334, 418, 449, 517, 646, 758
SfaNI GCATC 2 cut(s) 340, 564
SfcI CTRYAG 3 cut(s) 225, 390, 411
SinI GGWCC 1 cut(s) 482
Sse9I AATT 4 cut(s) 303, 607, 637, 657
SstI GAGCTC 1 cut(s) 334
StyD4I CCNGG 1 cut(s) 556
TaaI ACNGT 1 cut(s) 61
TaiI ACGT 2 cut(s) 116, 449
TaqI TCGA 1 cut(s) 63
TasI AATT 4 cut(s) 303, 607, 637, 657
TatI WGTACW 1 cut(s) 201
TfiI GAWTC 1 cut(s) 173
Tru1I TTAA 2 cut(s) 93, 455
Tru9I TTAA 2 cut(s) 93, 455
TscAI CASTG 1 cut(s) 298
TseI GCWGC 1 cut(s) 747
TspDTI ATGAA 4 cut(s) 47, 264, 548, 755
TspGWI ACGGA 1 cut(s) 170
TspRI CASTG 1 cut(s) 298
VpaK11BI GGWCC 1 cut(s) 482
XceI RCATGY 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.