Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009180.1

Orthogroup ID

OG0009640

Physical Location & Seq

Genomic Coordinates Reverse (-)

6844 .. 10540

Gene Structure 3697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009180.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

atggagacagagaagaaccagaaattaccggtcttgaaccagaaacgtccggcaatgaccaagaaaggagcttatgctgccatttcgtatatggcctccgcagttctcttgataatgttcaacaaagcagccctttcttcatacaatttccaatctgcaaatgtcatcactctttttcagatggtatcgtcatgtgcattgctgtatgcaatgaaatactggaagattatttctttcacagtcgagccacatagcactacgaacaatccagttacccttgtaccattgaagacgttggtacacactcttcctctcgcgatgtcttatttgctttacatggtagtccgtggtataaatgttcccatgtacaccacccttagacgaaccactatagcttttacaatggtcgttgagtatattttgatggggcagaaacattcatatcgtgttttgggcagtgtggggataattatactgggtgcatttattgctggagctcgggatctatcatttgatgcctatggctatgctgttgtctttgttgcaaacatctctacagcaatatatcttgcttctatagctcatattggtaaatcaagtggtcttagtacgtttggcttaatgtggtgcaatggaataatatgtggaccagtcttgctgttttggacatcaatcagaggtgatctaacagggatgatgaacttctcacatatattctcccctggttttcaggccgtgatgcttctttcctgtgttatggctttttcaataaattattgcgtgttttggaatacaaccatcaattcagctctcacacagacaatttgtggtaatctgaaggatcttctgactattggacttggctggttgctatttggaggacttccatttgatttggtaagcgtaaactcctatttagctgtaaatctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

310

Amino Acids

34.08

Weight (kDa)

9.34

Isoelectric Point (pI)

33.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009640)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02630 FvH4_1g02630 FvH4_1g02630
malus_domestica	MD02G1027300.v1.1
prunus_persica	Prupe.7G247800_v2.0.a1 Prupe.7G247800_v2.0.a1 Prupe.7G247800_v2.0.a1 Prupe.7G247800_v2.0.a1 Prupe.7G247800_v2.0.a1 Prupe.7G247800_v2.0.a1 Prupe.7G247800_v2.0.a1
pyrus_communis	pycom02g02220
rosa_chinensis	RchiOBHm_Chr2g0087661
rosa_laevigata	RLG00000015890
rosa_multiflora	Rmu_sc0009180.1_g000001
rosa_roxburghii	Rroxscaffold_2G00153310
rosa_rugosa	Rorug01G0478000
rosa_samantha	Rh2AG032100 Rh2BG031100 Rh2CG031600 Rh2DG031600
rosa_wichuraiana	Rw2G002500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	317
AciI	CCGC	1 cut(s)	99
AclWI	GGATC	2 cut(s)	510, 849
AcuI	CTGAAG	1 cut(s)	857
AfaI	GTAC	4 cut(s)	282, 300, 368, 610
AgeI	ACCGGT	1 cut(s)	28
AgsI	TTSAA	4 cut(s)	37, 121, 289, 768
AjnI	CCWGG	1 cut(s)	721
AluBI	AGCT	6 cut(s)	71, 395, 497, 581, 809, 920
AluI	AGCT	6 cut(s)	71, 395, 497, 581, 809, 920
Alw21I	GWGCWC	1 cut(s)	499
AlwI	GGATC	2 cut(s)	510, 849
Ama87I	CYCGRG	1 cut(s)	498
AoxI	GGCC	2 cut(s)	93, 732
ApeKI	GCWGC	2 cut(s)	77, 128
AsiGI	ACCGGT	1 cut(s)	28
AspS9I	GGNCC	1 cut(s)	647
AsuHPI	GGTGA	1 cut(s)	692
AvaI	CYCGRG	1 cut(s)	498
AvaII	GGWCC	1 cut(s)	647
BaeI	ACNNNNGTAYC	2 cut(s)	264, 297
BanII	GRGCYC	1 cut(s)	499
BarI	GAAGNNNNNNTAC	2 cut(s)	291, 323
BbsI	GAAGAC	1 cut(s)	296
Bbv12I	GWGCWC	1 cut(s)	499
BbvI	GCAGC	2 cut(s)	64, 140
BccI	CCATC	3 cut(s)	175, 418, 806
BceAI	ACGGC	1 cut(s)	719
BciT130I	CCWGG	1 cut(s)	723
BfmI	CTRYAG	3 cut(s)	390, 555, 576
BisI	GCNGC	2 cut(s)	78, 129
BlsI	GCNGC	2 cut(s)	79, 130
Bme1390I	CCNGG	1 cut(s)	723
Bme18I	GGWCC	1 cut(s)	647
BmeT110I	CYCGRG	1 cut(s)	498
BmgT120I	GGNCC	1 cut(s)	647
BmrFI	CCNGG	1 cut(s)	723
BmrI	ACTGGG	1 cut(s)	485
BmsI	GCATC	2 cut(s)	505, 729
BmuI	ACTGGG	1 cut(s)	485
BpiI	GAAGAC	1 cut(s)	296
BpmI	CTGGAG	1 cut(s)	513
BsaJI	CCNNGG	2 cut(s)	346, 721
BsaWI	WCCGGW	1 cut(s)	28
Bse118I	RCCGGY	1 cut(s)	28
Bse1I	ACTGG	4 cut(s)	224, 269, 480, 650
Bse3DI	GCAATG	4 cut(s)	60, 197, 216, 637
BseBI	CCWGG	1 cut(s)	723
BseDI	CCNNGG	2 cut(s)	346, 721
BseGI	GGATG	1 cut(s)	699
BseMI	GCAATG	4 cut(s)	60, 197, 216, 637
BseNI	ACTGG	4 cut(s)	224, 269, 480, 650
BseXI	GCAGC	2 cut(s)	64, 140
Bsh1236I	CGCG	1 cut(s)	317
BshFI	GGCC	2 cut(s)	95, 734
BshTI	ACCGGT	1 cut(s)	28
BsiHKAI	GWGCWC	1 cut(s)	499
BsiHKCI	CYCGRG	1 cut(s)	498
BsiSI	CCGG	2 cut(s)	29, 50
BsnI	GGCC	2 cut(s)	95, 734
BsoBI	CYCGRG	1 cut(s)	498
Bsp1286I	GDGCHC	1 cut(s)	499
Bsp1407I	TGTACA	1 cut(s)	366
Bsp143I	GATC	3 cut(s)	502, 682, 841
Bsp68I	TCGCGA	1 cut(s)	317
BspACI	CCGC	1 cut(s)	99
BspANI	GGCC	2 cut(s)	95, 734
BspFNI	CGCG	1 cut(s)	317
BspPI	GGATC	2 cut(s)	510, 849
BsrDI	GCAATG	4 cut(s)	60, 197, 216, 637
BsrFI	RCCGGY	1 cut(s)	28
BsrGI	TGTACA	1 cut(s)	366
BsrI	ACTGG	4 cut(s)	224, 269, 480, 650
BssAI	RCCGGY	1 cut(s)	28
BssECI	CCNNGG	2 cut(s)	346, 721
BssMI	GATC	3 cut(s)	502, 682, 841
Bst2UI	CCWGG	1 cut(s)	723
Bst4CI	ACNGT	1 cut(s)	241
Bst6I	CTCTTC	1 cut(s)	312
BstAPI	GCANNNNNTGC	1 cut(s)	488
BstAUI	TGTACA	1 cut(s)	366
BstDEI	CTNAG	2 cut(s)	377, 605
BstDSI	CCRYGG	1 cut(s)	346
BstF5I	GGATG	1 cut(s)	699
BstFNI	CGCG	1 cut(s)	317
BstKTI	GATC	3 cut(s)	505, 685, 844
BstMBI	GATC	3 cut(s)	502, 682, 841
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 488, 578
BstNI	CCWGG	1 cut(s)	723
BstSCI	CCNGG	1 cut(s)	721
BstSFI	CTRYAG	3 cut(s)	390, 555, 576
BstUI	CGCG	1 cut(s)	317
BstV1I	GCAGC	2 cut(s)	64, 140
BstV2I	GAAGAC	1 cut(s)	296
BstX2I	RGATCY	2 cut(s)	502, 841
BstYI	RGATCY	2 cut(s)	502, 841
BsuRI	GGCC	2 cut(s)	95, 734
BtgI	CCRYGG	1 cut(s)	346
BtgZI	GCGATG	1 cut(s)	332
BtsCI	GGATG	1 cut(s)	699
BtsI	GCAGTG	1 cut(s)	463
BtsIMutI	CAGTG	1 cut(s)	463
BtuMI	TCGCGA	1 cut(s)	317
Cfr10I	RCCGGY	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	647
Csp6I	GTAC	4 cut(s)	281, 299, 367, 609
CspAI	ACCGGT	1 cut(s)	28
CviAII	CATG	3 cut(s)	192, 337, 364
CviQI	GTAC	4 cut(s)	281, 299, 367, 609
DdeI	CTNAG	2 cut(s)	377, 605
DpnI	GATC	3 cut(s)	504, 684, 843
DpnII	GATC	3 cut(s)	502, 682, 841
Eam1104I	CTCTTC	1 cut(s)	312
EarI	CTCTTC	1 cut(s)	312
Ecl136II	GAGCTC	1 cut(s)	497
Eco24I	GRGCYC	1 cut(s)	499
Eco47I	GGWCC	1 cut(s)	647
Eco53kI	GAGCTC	1 cut(s)	497
Eco57I	CTGAAG	1 cut(s)	857
Eco88I	CYCGRG	1 cut(s)	498
EcoICRI	GAGCTC	1 cut(s)	497
EcoRII	CCWGG	1 cut(s)	721
EcoT38I	GRGCYC	1 cut(s)	499
FaeI	CATG	3 cut(s)	195, 340, 367
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
FatI	CATG	3 cut(s)	191, 336, 363
Fnu4HI	GCNGC	2 cut(s)	78, 129
FokI	GGATG	1 cut(s)	706
FriOI	GRGCYC	1 cut(s)	499
Fsp4HI	GCNGC	2 cut(s)	78, 129
GluI	GCNGC	2 cut(s)	78, 129
GsuI	CTGGAG	1 cut(s)	513
HaeIII	GGCC	2 cut(s)	95, 734
HapII	CCGG	2 cut(s)	29, 50
Hin1II	CATG	3 cut(s)	195, 340, 367
HpaII	CCGG	2 cut(s)	29, 50
HphI	GGTGA	1 cut(s)	692
Hpy166II	GTNNAC	4 cut(s)	301, 369, 647, 907
Hpy188I	TCNGA	4 cut(s)	180, 677, 837, 849
Hpy188III	TCNNGA	4 cut(s)	34, 109, 316, 500
Hpy8I	GTNNAC	4 cut(s)	301, 369, 647, 907
HpyAV	CCTTC	1 cut(s)	832
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4IV	ACGT	3 cut(s)	46, 293, 611
HpyCH4V	TGCA	6 cut(s)	158, 197, 209, 482, 545, 630
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 488, 578
HpyF3I	CTNAG	2 cut(s)	377, 605
HpySE526I	ACGT	3 cut(s)	46, 293, 611
Hsp92II	CATG	3 cut(s)	195, 340, 367
Kzo9I	GATC	3 cut(s)	502, 682, 841
LmnI	GCTCC	2 cut(s)	68, 494
Lsp1109I	GCAGC	2 cut(s)	64, 140
LweI	GCATC	2 cut(s)	505, 729
MaeII	ACGT	3 cut(s)	46, 293, 611
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	3 cut(s)	504, 684, 843
MboI	GATC	3 cut(s)	502, 682, 841
MboII	GAAGA	6 cut(s)	25, 129, 235, 299, 301, 836
MflI	RGATCY	2 cut(s)	502, 841
MhlI	GDGCHC	1 cut(s)	499
MluCI	AATT	6 cut(s)	23, 145, 468, 772, 802, 822
MnlI	CCTC	4 cut(s)	106, 321, 671, 872
MseI	TTAA	1 cut(s)	620
MspI	CCGG	2 cut(s)	29, 50
MspR9I	CCNGG	1 cut(s)	723
MvaI	CCWGG	1 cut(s)	723
MvnI	CGCG	1 cut(s)	317
MwoI	GCNNNNNNNGC	3 cut(s)	77, 488, 578
NdeII	GATC	3 cut(s)	502, 682, 841
NlaIII	CATG	3 cut(s)	195, 340, 367
NruI	TCGCGA	1 cut(s)	317
PinAI	ACCGGT	1 cut(s)	28
PkrI	GCNGC	2 cut(s)	79, 130
Psp124BI	GAGCTC	1 cut(s)	499
Psp6I	CCWGG	1 cut(s)	721
PspGI	CCWGG	1 cut(s)	721
PspPI	GGNCC	1 cut(s)	647
PsuI	RGATCY	2 cut(s)	502, 841
RruI	TCGCGA	1 cut(s)	317
RsaI	GTAC	4 cut(s)	282, 300, 368, 610
RsaNI	GTAC	4 cut(s)	281, 299, 367, 609
SacI	GAGCTC	1 cut(s)	499
SaqAI	TTAA	1 cut(s)	620
SatI	GCNGC	2 cut(s)	78, 129
Sau3AI	GATC	3 cut(s)	502, 682, 841
Sau96I	GGNCC	1 cut(s)	647
ScrFI	CCNGG	1 cut(s)	723
SduI	GDGCHC	1 cut(s)	499
SfaNI	GCATC	2 cut(s)	505, 729
SfcI	CTRYAG	3 cut(s)	390, 555, 576
SinI	GGWCC	1 cut(s)	647
Sse9I	AATT	6 cut(s)	23, 145, 468, 772, 802, 822
SsiI	CCGC	1 cut(s)	99
SstI	GAGCTC	1 cut(s)	499
StyD4I	CCNGG	1 cut(s)	721
TaaI	ACNGT	1 cut(s)	241
TaiI	ACGT	3 cut(s)	49, 296, 614
TaqI	TCGA	1 cut(s)	243
TasI	AATT	6 cut(s)	23, 145, 468, 772, 802, 822
TatI	WGTACW	1 cut(s)	366
Tru1I	TTAA	1 cut(s)	620
Tru9I	TTAA	1 cut(s)	620
TscAI	CASTG	1 cut(s)	463
TseI	GCWGC	2 cut(s)	77, 128
TspDTI	ATGAA	4 cut(s)	129, 227, 429, 713
TspGWI	ACGGA	1 cut(s)	335
TspRI	CASTG	1 cut(s)	463
VpaK11BI	GGWCC	1 cut(s)	647
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.