Rh2AG032100

UDP-sugar transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0009640
Physical Location & Seq
Forward (+)
2197775 .. 2202241
4467 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG032100.1

Sequence Viewer

Length: 768 bp
ATGTTCAACAAAGCAGCCCTTTCTTCATACAATTTCCAATCTGCAAATGTCATCACTCTTTTTCAGATGGTATCGTCATGTGCATTGCTGTATGCAATGAAATACTGGAAGATTATTTCTTTCACAGTCGAGCCACATAGCACTACGAACAATCCAGTTACCCTTGTACCATTGAAGACGTTGGTACACACTCTTCCTCTCGCGATGTCTTATTTGCTTTACATGTTGGTTACAATGGAATCAGTCCGTGGTATAAATGTTCCCATGTACACCACCCTTAGACGAACCACTATAGCTTTTACAATGGTCGTTGAGTATATTTTGATGGGGCAGAAACATTCATATCGTGTTTTGGGCAGTGTGGGGATAATTATACTGGGTGCATTTATTGCTGGAGCTCGGGATCTATCATTTGATGCCTATGGCTATGCTGTTGTCTTTGTTGCAAACATCTCTACAGCAATATATCTTGCTTCTATAGCTCATATTGGTAAATCAAGTGGTCTTAGTACGTTTGGCTTAATGTGGTGCAATGGAATAATATGTGGACCAGTCTTGCTGTTTTGGACATCAATCAGAGGTGATCTAACAGGGATGATGAACTTCGCACATATATTCTCCCCTGGTTTTCAGGCCGTGATGCTTCTTTCCTGTGTTATGGCTTTTTCAATAAATTATTGCGTGTTTTGGAATACAACCATCAATTCAGCTCTCACACAGACAATTTGTGGTAATCTGAAGGTGTGTAACATTCATTTCGGACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

255

Amino Acids

28.1

Weight (kDa)

9.1

Isoelectric Point (pI)

30.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 2 - 247 1.4e-07 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 203
AclWI GGATC 1 cut(s) 411
AcuI CTGAAG 1 cut(s) 758
AfaI GTAC 4 cut(s) 168, 186, 269, 511
AflIII ACRYGT 1 cut(s) 222
AgsI TTSAA 3 cut(s) 7, 175, 669
AjnI CCWGG 1 cut(s) 622
AluBI AGCT 4 cut(s) 296, 398, 482, 710
AluI AGCT 4 cut(s) 296, 398, 482, 710
Alw21I GWGCWC 1 cut(s) 400
AlwI GGATC 1 cut(s) 411
Ama87I CYCGRG 1 cut(s) 399
AoxI GGCC 1 cut(s) 633
ApeKI GCWGC 1 cut(s) 14
AspS9I GGNCC 2 cut(s) 548, 761
AsuHPI GGTGA 1 cut(s) 593
AvaI CYCGRG 1 cut(s) 399
AvaII GGWCC 2 cut(s) 548, 761
BaeI ACNNNNGTAYC 2 cut(s) 150, 183
BanII GRGCYC 1 cut(s) 400
BarI GAAGNNNNNNTAC 2 cut(s) 177, 209
BbsI GAAGAC 1 cut(s) 182
Bbv12I GWGCWC 1 cut(s) 400
BbvI GCAGC 1 cut(s) 26
BccI CCATC 3 cut(s) 61, 319, 707
BceAI ACGGC 1 cut(s) 620
BciT130I CCWGG 1 cut(s) 624
BfmI CTRYAG 3 cut(s) 291, 456, 477
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
Bme1390I CCNGG 1 cut(s) 624
Bme18I GGWCC 2 cut(s) 548, 761
BmeT110I CYCGRG 1 cut(s) 399
BmgT120I GGNCC 2 cut(s) 548, 761
BmrFI CCNGG 1 cut(s) 624
BmrI ACTGGG 1 cut(s) 386
BmsI GCATC 2 cut(s) 406, 630
BmuI ACTGGG 1 cut(s) 386
BpiI GAAGAC 1 cut(s) 182
BpmI CTGGAG 1 cut(s) 414
BsaJI CCNNGG 2 cut(s) 247, 622
Bse1I ACTGG 4 cut(s) 110, 155, 381, 551
Bse3DI GCAATG 3 cut(s) 83, 102, 538
BseBI CCWGG 1 cut(s) 624
BseDI CCNNGG 2 cut(s) 247, 622
BseGI GGATG 1 cut(s) 600
BseMI GCAATG 3 cut(s) 83, 102, 538
BseNI ACTGG 4 cut(s) 110, 155, 381, 551
BseXI GCAGC 1 cut(s) 26
Bsh1236I CGCG 1 cut(s) 203
BshFI GGCC 1 cut(s) 635
BsiHKAI GWGCWC 1 cut(s) 400
BsiHKCI CYCGRG 1 cut(s) 399
BsnI GGCC 1 cut(s) 635
BsoBI CYCGRG 1 cut(s) 399
Bsp1286I GDGCHC 1 cut(s) 400
Bsp1407I TGTACA 1 cut(s) 267
Bsp143I GATC 2 cut(s) 403, 583
Bsp68I TCGCGA 1 cut(s) 203
BspANI GGCC 1 cut(s) 635
BspFNI CGCG 1 cut(s) 203
BspPI GGATC 1 cut(s) 411
BsrDI GCAATG 3 cut(s) 83, 102, 538
BsrGI TGTACA 1 cut(s) 267
BsrI ACTGG 4 cut(s) 110, 155, 381, 551
BssECI CCNNGG 2 cut(s) 247, 622
BssMI GATC 2 cut(s) 403, 583
Bst2UI CCWGG 1 cut(s) 624
Bst4CI ACNGT 1 cut(s) 127
Bst6I CTCTTC 1 cut(s) 198
BstAPI GCANNNNNTGC 1 cut(s) 389
BstAUI TGTACA 1 cut(s) 267
BstDEI CTNAG 3 cut(s) 278, 506, 765
BstDSI CCRYGG 1 cut(s) 247
BstF5I GGATG 1 cut(s) 600
BstFNI CGCG 1 cut(s) 203
BstKTI GATC 2 cut(s) 406, 586
BstMBI GATC 2 cut(s) 403, 583
BstMWI GCNNNNNNNGC 2 cut(s) 389, 479
BstNI CCWGG 1 cut(s) 624
BstNSI RCATGY 1 cut(s) 226
BstSCI CCNGG 1 cut(s) 622
BstSFI CTRYAG 3 cut(s) 291, 456, 477
BstUI CGCG 1 cut(s) 203
BstV1I GCAGC 1 cut(s) 26
BstV2I GAAGAC 1 cut(s) 182
BstX2I RGATCY 1 cut(s) 403
BstYI RGATCY 1 cut(s) 403
BsuRI GGCC 1 cut(s) 635
BtgI CCRYGG 1 cut(s) 247
BtgZI GCGATG 1 cut(s) 218
BtsCI GGATG 1 cut(s) 600
BtsI GCAGTG 1 cut(s) 364
BtsIMutI CAGTG 1 cut(s) 364
BtuMI TCGCGA 1 cut(s) 203
Cfr13I GGNCC 2 cut(s) 548, 761
Csp6I GTAC 4 cut(s) 167, 185, 268, 510
CviAII CATG 3 cut(s) 78, 223, 265
CviQI GTAC 4 cut(s) 167, 185, 268, 510
DdeI CTNAG 3 cut(s) 278, 506, 765
DpnI GATC 2 cut(s) 405, 585
DpnII GATC 2 cut(s) 403, 583
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
Ecl136II GAGCTC 1 cut(s) 398
Eco24I GRGCYC 1 cut(s) 400
Eco47I GGWCC 2 cut(s) 548, 761
Eco53kI GAGCTC 1 cut(s) 398
Eco57I CTGAAG 1 cut(s) 758
Eco88I CYCGRG 1 cut(s) 399
EcoICRI GAGCTC 1 cut(s) 398
EcoRII CCWGG 1 cut(s) 622
EcoT38I GRGCYC 1 cut(s) 400
FaeI CATG 3 cut(s) 81, 226, 268
FalI AAGNNNNNCTT 1 cut(s) 35
FatI CATG 3 cut(s) 77, 222, 264
Fnu4HI GCNGC 1 cut(s) 15
FokI GGATG 1 cut(s) 607
FriOI GRGCYC 1 cut(s) 400
Fsp4HI GCNGC 1 cut(s) 15
GluI GCNGC 1 cut(s) 15
GsuI CTGGAG 1 cut(s) 414
HaeIII GGCC 1 cut(s) 635
Hin1II CATG 3 cut(s) 81, 226, 268
HinfI GANTC 1 cut(s) 239
HphI GGTGA 1 cut(s) 593
Hpy166II GTNNAC 3 cut(s) 187, 270, 548
Hpy188I TCNGA 4 cut(s) 66, 578, 738, 761
Hpy188III TCNNGA 2 cut(s) 202, 401
Hpy8I GTNNAC 3 cut(s) 187, 270, 548
HpyAV CCTTC 1 cut(s) 733
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4IV ACGT 2 cut(s) 179, 512
HpyCH4V TGCA 6 cut(s) 44, 83, 95, 383, 446, 531
HpyF10VI GCNNNNNNNGC 2 cut(s) 389, 479
HpyF3I CTNAG 3 cut(s) 278, 506, 765
HpySE526I ACGT 2 cut(s) 179, 512
Hsp92II CATG 3 cut(s) 81, 226, 268
Kzo9I GATC 2 cut(s) 403, 583
LmnI GCTCC 1 cut(s) 395
Lsp1109I GCAGC 1 cut(s) 26
LweI GCATC 2 cut(s) 406, 630
MaeII ACGT 2 cut(s) 179, 512
MaeIII GTNAC 3 cut(s) 157, 229, 746
MalI GATC 2 cut(s) 405, 585
MboI GATC 2 cut(s) 403, 583
MboII GAAGA 4 cut(s) 15, 121, 185, 187
MflI RGATCY 1 cut(s) 403
MhlI GDGCHC 1 cut(s) 400
MluCI AATT 5 cut(s) 31, 369, 673, 703, 723
MnlI CCTC 2 cut(s) 207, 572
MseI TTAA 1 cut(s) 521
MspR9I CCNGG 1 cut(s) 624
MvaI CCWGG 1 cut(s) 624
MvnI CGCG 1 cut(s) 203
MwoI GCNNNNNNNGC 2 cut(s) 389, 479
NdeII GATC 2 cut(s) 403, 583
NlaIII CATG 3 cut(s) 81, 226, 268
NruI TCGCGA 1 cut(s) 203
NspI RCATGY 1 cut(s) 226
PciI ACATGT 1 cut(s) 222
PfeI GAWTC 1 cut(s) 239
PkrI GCNGC 1 cut(s) 16
PscI ACATGT 1 cut(s) 222
Psp124BI GAGCTC 1 cut(s) 400
Psp6I CCWGG 1 cut(s) 622
PspGI CCWGG 1 cut(s) 622
PspPI GGNCC 2 cut(s) 548, 761
PsuI RGATCY 1 cut(s) 403
RruI TCGCGA 1 cut(s) 203
RsaI GTAC 4 cut(s) 168, 186, 269, 511
RsaNI GTAC 4 cut(s) 167, 185, 268, 510
SacI GAGCTC 1 cut(s) 400
SaqAI TTAA 1 cut(s) 521
SatI GCNGC 1 cut(s) 15
Sau3AI GATC 2 cut(s) 403, 583
Sau96I GGNCC 2 cut(s) 548, 761
ScrFI CCNGG 1 cut(s) 624
SduI GDGCHC 1 cut(s) 400
SetI ASST 9 cut(s) 182, 298, 400, 484, 515, 583, 712, 744, 766
SfaNI GCATC 2 cut(s) 406, 630
SfcI CTRYAG 3 cut(s) 291, 456, 477
SinI GGWCC 2 cut(s) 548, 761
Sse9I AATT 5 cut(s) 31, 369, 673, 703, 723
SstI GAGCTC 1 cut(s) 400
StyD4I CCNGG 1 cut(s) 622
TaaI ACNGT 1 cut(s) 127
TaiI ACGT 2 cut(s) 182, 515
TaqI TCGA 1 cut(s) 129
TasI AATT 5 cut(s) 31, 369, 673, 703, 723
TatI WGTACW 1 cut(s) 267
TfiI GAWTC 1 cut(s) 239
Tru1I TTAA 1 cut(s) 521
Tru9I TTAA 1 cut(s) 521
TscAI CASTG 1 cut(s) 364
TseI GCWGC 1 cut(s) 14
TspDTI ATGAA 5 cut(s) 15, 113, 330, 614, 743
TspGWI ACGGA 1 cut(s) 236
TspRI CASTG 1 cut(s) 364
VpaK11BI GGWCC 2 cut(s) 548, 761
XceI RCATGY 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.