RLG00000015890

UDP-sugar transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0009640
Physical Location & Seq
Forward (+)
2124242 .. 2128112
3871 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015890

Sequence Viewer

Length: 987 bp
ATGGAGACAGAGAAGAACCAGAAATTACCAATCTTGAACCAGAAACGTCCGGCAATGACCAAGAAAGGAGCTTATGCTGCCATTTCGTATATGGCCTCCGCAGTTCTCTTGATAATGTTCAACAAAGCAGCCCTTTCTTCATACAATTTCCAATCTGCAAATGTCATCACTCTTTTTCAGATGGTATCGTCATGTGCATTGCTGTATGCAATGAAATACTGGAAGATTATTTCTTTCACAGTCGAGCCACATAGCACTACAAACAATCCAGTTACCCTTGTACCATTGAAGACGTTGGTACACACTCTTCCTCTCGCGATGTCTTACTTGCTTTACATGTTGGTTACAATGGAATCAGTCCGTGGTATAAATGTTCCCATGTACACCACCCTTAGACGAACCACTATAGCTTTTACAATGGTCGTTGAGTATATTTTGACGGGGCAGAAACATTCATATCATGTTTTGGGCAGTGTGGGGATAATTATAGTGGGTGCATTTATTGCTGGAGCTCGGGATCTGTCATTTGATGCCTATGGCTATGCTGTTGTCTTTGTTGCAAACATCTCTACAGCAATATATCTCGCTTCTATAGCTCATATTGGTAAATCAAGTGGTCTTAGTACGTTTGGCTTAATGTGGTGCAATGGAATAATATGTGGACCAGTCTTGCTGTTTTGGACATCAATCAGAGGTGATCTAACAGGGATGATGAACTTCTCACATATATTCTCCCCTGGTTTTCAGGCCGTGATGCTTCTTTCCTGTGTTATGGCTTTTTCAATAAATTATTGCGTGTTTTGGAATACAACCCTCAATTCAGCTCTCACACAGACAATTTGTGGTAATCTGAAGGATCTTCTGACTATTGGACTTGGCTGGTTGCTATTTGGAGGACTTCCATTTGATTTGTTAAATGTTGCTGGCCAATCTCTTGGTTTTCTCGGGTCCTGCTTGTATGCTTACTGTAAACTCAAAGGGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

329

Amino Acids

35.94

Weight (kDa)

9.26

Isoelectric Point (pI)

35.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 24 - 320 7.5e-11 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 317
AciI CCGC 1 cut(s) 99
AclWI GGATC 2 cut(s) 525, 864
AcoI YGGCCR 1 cut(s) 925
AcuI CTGAAG 1 cut(s) 872
AfaI GTAC 4 cut(s) 282, 300, 383, 625
AflIII ACRYGT 1 cut(s) 336
AgsI TTSAA 4 cut(s) 37, 121, 289, 783
AjnI CCWGG 1 cut(s) 736
AluBI AGCT 5 cut(s) 71, 410, 512, 596, 824
AluI AGCT 5 cut(s) 71, 410, 512, 596, 824
Alw21I GWGCWC 1 cut(s) 514
AlwI GGATC 2 cut(s) 525, 864
Ama87I CYCGRG 2 cut(s) 513, 944
AoxI GGCC 3 cut(s) 93, 747, 925
ApeKI GCWGC 2 cut(s) 77, 128
AspS9I GGNCC 2 cut(s) 662, 948
AsuHPI GGTGA 1 cut(s) 707
AvaI CYCGRG 2 cut(s) 513, 944
AvaII GGWCC 2 cut(s) 662, 948
BaeI ACNNNNGTAYC 2 cut(s) 264, 297
BalI TGGCCA 1 cut(s) 927
BanII GRGCYC 1 cut(s) 514
BarI GAAGNNNNNNTAC 2 cut(s) 291, 323
BbsI GAAGAC 1 cut(s) 296
Bbv12I GWGCWC 1 cut(s) 514
BbvI GCAGC 2 cut(s) 64, 140
BccI CCATC 1 cut(s) 175
BceAI ACGGC 1 cut(s) 734
BciT130I CCWGG 1 cut(s) 738
BfmI CTRYAG 3 cut(s) 405, 570, 591
BisI GCNGC 2 cut(s) 78, 129
BlsI GCNGC 2 cut(s) 79, 130
Bme1390I CCNGG 1 cut(s) 738
Bme18I GGWCC 2 cut(s) 662, 948
BmeT110I CYCGRG 2 cut(s) 513, 944
BmgT120I GGNCC 2 cut(s) 662, 948
BmiI GGNNCC 1 cut(s) 949
BmrFI CCNGG 1 cut(s) 738
BmsI GCATC 2 cut(s) 520, 744
BpiI GAAGAC 1 cut(s) 296
BpmI CTGGAG 1 cut(s) 528
BsaJI CCNNGG 2 cut(s) 361, 736
Bse1I ACTGG 3 cut(s) 224, 269, 665
Bse3DI GCAATG 4 cut(s) 60, 197, 216, 652
BseBI CCWGG 1 cut(s) 738
BseDI CCNNGG 2 cut(s) 361, 736
BseGI GGATG 1 cut(s) 714
BseMI GCAATG 4 cut(s) 60, 197, 216, 652
BseNI ACTGG 3 cut(s) 224, 269, 665
BseXI GCAGC 2 cut(s) 64, 140
Bsh1236I CGCG 1 cut(s) 317
BshFI GGCC 3 cut(s) 95, 749, 927
BsiHKAI GWGCWC 1 cut(s) 514
BsiHKCI CYCGRG 2 cut(s) 513, 944
BsiSI CCGG 1 cut(s) 50
BsnI GGCC 3 cut(s) 95, 749, 927
BsoBI CYCGRG 2 cut(s) 513, 944
Bsp1286I GDGCHC 1 cut(s) 514
Bsp1407I TGTACA 1 cut(s) 381
Bsp143I GATC 3 cut(s) 517, 697, 856
Bsp68I TCGCGA 1 cut(s) 317
BspACI CCGC 1 cut(s) 99
BspANI GGCC 3 cut(s) 95, 749, 927
BspFNI CGCG 1 cut(s) 317
BspLI GGNNCC 1 cut(s) 949
BspPI GGATC 2 cut(s) 525, 864
BsrDI GCAATG 4 cut(s) 60, 197, 216, 652
BsrGI TGTACA 1 cut(s) 381
BsrI ACTGG 3 cut(s) 224, 269, 665
BssECI CCNNGG 2 cut(s) 361, 736
BssMI GATC 3 cut(s) 517, 697, 856
Bst2UI CCWGG 1 cut(s) 738
Bst4CI ACNGT 2 cut(s) 241, 968
Bst6I CTCTTC 1 cut(s) 312
BstAPI GCANNNNNTGC 1 cut(s) 503
BstAUI TGTACA 1 cut(s) 381
BstC8I GCNNGC 1 cut(s) 925
BstDEI CTNAG 2 cut(s) 392, 620
BstDSI CCRYGG 1 cut(s) 361
BstF5I GGATG 1 cut(s) 714
BstFNI CGCG 1 cut(s) 317
BstKTI GATC 3 cut(s) 520, 700, 859
BstMBI GATC 3 cut(s) 517, 697, 856
BstMWI GCNNNNNNNGC 3 cut(s) 77, 503, 593
BstNI CCWGG 1 cut(s) 738
BstNSI RCATGY 1 cut(s) 340
BstSCI CCNGG 1 cut(s) 736
BstSFI CTRYAG 3 cut(s) 405, 570, 591
BstUI CGCG 1 cut(s) 317
BstV1I GCAGC 2 cut(s) 64, 140
BstV2I GAAGAC 1 cut(s) 296
BstX2I RGATCY 2 cut(s) 517, 856
BstXI CCANNNNNNTGG 1 cut(s) 935
BstYI RGATCY 2 cut(s) 517, 856
BsuRI GGCC 3 cut(s) 95, 749, 927
BtgI CCRYGG 1 cut(s) 361
BtgZI GCGATG 1 cut(s) 332
BtsCI GGATG 1 cut(s) 714
BtsI GCAGTG 1 cut(s) 478
BtsIMutI CAGTG 1 cut(s) 478
BtuMI TCGCGA 1 cut(s) 317
Cac8I GCNNGC 1 cut(s) 925
Cfr13I GGNCC 2 cut(s) 662, 948
Csp6I GTAC 4 cut(s) 281, 299, 382, 624
CviAII CATG 4 cut(s) 192, 337, 379, 461
CviQI GTAC 4 cut(s) 281, 299, 382, 624
DdeI CTNAG 2 cut(s) 392, 620
DpnI GATC 3 cut(s) 519, 699, 858
DpnII GATC 3 cut(s) 517, 697, 856
EaeI YGGCCR 1 cut(s) 925
Eam1104I CTCTTC 1 cut(s) 312
EarI CTCTTC 1 cut(s) 312
Ecl136II GAGCTC 1 cut(s) 512
Eco24I GRGCYC 1 cut(s) 514
Eco47I GGWCC 2 cut(s) 662, 948
Eco53kI GAGCTC 1 cut(s) 512
Eco57I CTGAAG 1 cut(s) 872
Eco88I CYCGRG 2 cut(s) 513, 944
EcoICRI GAGCTC 1 cut(s) 512
EcoO109I RGGNCCY 1 cut(s) 948
EcoRII CCWGG 1 cut(s) 736
EcoT38I GRGCYC 1 cut(s) 514
FaeI CATG 4 cut(s) 195, 340, 382, 464
FalI AAGNNNNNCTT 2 cut(s) 117, 149
FatI CATG 4 cut(s) 191, 336, 378, 460
Fnu4HI GCNGC 2 cut(s) 78, 129
FokI GGATG 1 cut(s) 721
FriOI GRGCYC 1 cut(s) 514
Fsp4HI GCNGC 2 cut(s) 78, 129
GluI GCNGC 2 cut(s) 78, 129
GsuI CTGGAG 1 cut(s) 528
HaeIII GGCC 3 cut(s) 95, 749, 927
HapII CCGG 1 cut(s) 50
Hin1II CATG 4 cut(s) 195, 340, 382, 464
HinfI GANTC 1 cut(s) 353
HpaII CCGG 1 cut(s) 50
HphI GGTGA 1 cut(s) 707
Hpy166II GTNNAC 4 cut(s) 301, 384, 662, 971
Hpy188I TCNGA 4 cut(s) 180, 692, 852, 864
Hpy188III TCNNGA 4 cut(s) 34, 109, 316, 515
Hpy8I GTNNAC 4 cut(s) 301, 384, 662, 971
HpyAV CCTTC 1 cut(s) 847
HpyCH4III ACNGT 2 cut(s) 241, 968
HpyCH4IV ACGT 3 cut(s) 46, 293, 626
HpyCH4V TGCA 6 cut(s) 158, 197, 209, 497, 560, 645
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 503, 593
HpyF3I CTNAG 2 cut(s) 392, 620
HpySE526I ACGT 3 cut(s) 46, 293, 626
Hsp92II CATG 4 cut(s) 195, 340, 382, 464
Kzo9I GATC 3 cut(s) 517, 697, 856
LmnI GCTCC 2 cut(s) 68, 509
Lsp1109I GCAGC 2 cut(s) 64, 140
LweI GCATC 2 cut(s) 520, 744
MaeII ACGT 3 cut(s) 46, 293, 626
MaeIII GTNAC 2 cut(s) 271, 343
MalI GATC 3 cut(s) 519, 699, 858
MboI GATC 3 cut(s) 517, 697, 856
MboII GAAGA 6 cut(s) 25, 129, 235, 299, 301, 851
MflI RGATCY 2 cut(s) 517, 856
MhlI GDGCHC 1 cut(s) 514
MlsI TGGCCA 1 cut(s) 927
MluCI AATT 6 cut(s) 23, 145, 483, 787, 817, 837
MluNI TGGCCA 1 cut(s) 927
MnlI CCTC 5 cut(s) 106, 321, 686, 824, 887
Mox20I TGGCCA 1 cut(s) 927
MscI TGGCCA 1 cut(s) 927
MseI TTAA 2 cut(s) 635, 914
Msp20I TGGCCA 1 cut(s) 927
MspI CCGG 1 cut(s) 50
MspR9I CCNGG 1 cut(s) 738
MvaI CCWGG 1 cut(s) 738
MvnI CGCG 1 cut(s) 317
MwoI GCNNNNNNNGC 3 cut(s) 77, 503, 593
NdeII GATC 3 cut(s) 517, 697, 856
NlaIII CATG 4 cut(s) 195, 340, 382, 464
NlaIV GGNNCC 1 cut(s) 949
NruI TCGCGA 1 cut(s) 317
NspI RCATGY 1 cut(s) 340
PciI ACATGT 1 cut(s) 336
PfeI GAWTC 1 cut(s) 353
PkrI GCNGC 2 cut(s) 79, 130
PpuMI RGGWCCY 1 cut(s) 948
PscI ACATGT 1 cut(s) 336
Psp124BI GAGCTC 1 cut(s) 514
Psp5II RGGWCCY 1 cut(s) 948
Psp6I CCWGG 1 cut(s) 736
PspGI CCWGG 1 cut(s) 736
PspN4I GGNNCC 1 cut(s) 949
PspPI GGNCC 2 cut(s) 662, 948
PspPPI RGGWCCY 1 cut(s) 948
PsuI RGATCY 2 cut(s) 517, 856
RruI TCGCGA 1 cut(s) 317
RsaI GTAC 4 cut(s) 282, 300, 383, 625
RsaNI GTAC 4 cut(s) 281, 299, 382, 624
SacI GAGCTC 1 cut(s) 514
SaqAI TTAA 2 cut(s) 635, 914
SatI GCNGC 2 cut(s) 78, 129
Sau3AI GATC 3 cut(s) 517, 697, 856
Sau96I GGNCC 2 cut(s) 662, 948
ScrFI CCNGG 1 cut(s) 738
SduI GDGCHC 1 cut(s) 514
SetI ASST 9 cut(s) 49, 73, 296, 412, 514, 598, 629, 697, 826
SfaNI GCATC 2 cut(s) 520, 744
SfcI CTRYAG 3 cut(s) 405, 570, 591
SinI GGWCC 2 cut(s) 662, 948
Sse9I AATT 6 cut(s) 23, 145, 483, 787, 817, 837
SsiI CCGC 1 cut(s) 99
SstI GAGCTC 1 cut(s) 514
StyD4I CCNGG 1 cut(s) 736
TaaI ACNGT 2 cut(s) 241, 968
TaiI ACGT 3 cut(s) 49, 296, 629
TaqI TCGA 1 cut(s) 243
TasI AATT 6 cut(s) 23, 145, 483, 787, 817, 837
TatI WGTACW 1 cut(s) 381
TfiI GAWTC 1 cut(s) 353
Tru1I TTAA 2 cut(s) 635, 914
Tru9I TTAA 2 cut(s) 635, 914
TscAI CASTG 1 cut(s) 478
TseI GCWGC 2 cut(s) 77, 128
TspDTI ATGAA 4 cut(s) 129, 227, 444, 728
TspGWI ACGGA 1 cut(s) 350
TspRI CASTG 1 cut(s) 478
VpaK11BI GGWCC 2 cut(s) 662, 948
XceI RCATGY 1 cut(s) 340
XcmI CCANNNNNNNNNTGG 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.