MD02G1027300.v1.1

UDP-sugar transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0009640
Physical Location & Seq
Reverse (-)
2068782 .. 2072844
4063 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1027300.v1.1.491

Sequence Viewer

Length: 1287 bp
ATGAATATTCGCAAAAGGAAACAAATCGTACGTTTACATTCTGCTTTTGGTAATCTAATTAATTATTTTTATTATTTTATTATTTTACACCTGACCAGAATCATCATTACTTCCCAAAATATTCCGTCCCGTCCGGCCCCCGACTCTCACTGCCACTTTCTCACACCCCCACTTCTTAAAAGTTGCCCAAAAGCTTCGACTTTCCAGTCCCGAAACTTTCCAGAGCGTCAGAGTCTCTGCGACTCCGAAGGAGAGAGGGAGGAAGAAAGGGCGTGTTTGACGATGGAGACGGAAAGAACCCAGGTGAAGTTGCCAGTCTCCTCCAACTCTCCGCGGACCAAGAAATCCCCGGCGATGACCAGGAAAGGAGCTTTTGCTGCCGTTTCTTACATGGCTTCCGCCGTTCTCTTGATAATGTTCAACAAAGCAGCCCTCTCTTCTTACAATTTCCCGTCTGCAAATGTCATCACACTTTTCCAGATGGTATCGTCGTGTACATTTCTGTACGCACTGAAATGCAGGAAGATCGTTTCTTTCACAACAGAACCAGAGAGTACTCCGAACAATCCAGCTGTTATGGTACCATTTAAGACGTTGATTCGCACTCTTCCTCTTGCAATGTCCTATTTGCTTTACATGTTGGTAACAATGGAATCAGTTCGTGGTATAAATGTTCCTATGTACACCACCCTGAGACGGACTACTGTAGCTTTTACAATGATTGTTGAGCATATTTTGACACGGCAGAAACATTCATATCCTGTTATGGGCAGTGTGGGGATAATTATACTCGGTGCAATTGTTGCCGGAGCTCGGGATTTGTCATTTGACGCCTATAGCTATGGTGTTGTCTTTGTTGCAAACATATGCACAGCGATATATCTTGCTTCTATAGCTCATATTGGTAAATCCAGTGGTCTTAGTACCTTTGGCCTAATGTGGTGCAATGGAATAATATGTGGACCAATCTTGCTGTTTTGGACATCAATTAACGGTGACCTAGAAGGGATGATAAACTTCCCGCATCTATTCTCCCCTGGGTTTCAGGCTGTGATGCTTCTTTCCTGTGTTATGGCTTTTTCCATAAATTATTGCGTTTTTTGGAATACCACTCTGAATTCTGCTCTCACACAGACAATTTGTGGTAATTTGAAGGATCTTTTTACTATCGGACTTGGCTGGTTACTGTTCGGCGGGCTTCCATTTGATTTGTTAAATGTTGCTGGTCAATCTCTTGGTTTTTTTGGGTCCTGTTTATATGCGTACTGTAAACTCCGAGGGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

429

Amino Acids

47.53

Weight (kDa)

9.32

Isoelectric Point (pI)

53.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 127 - 420 1e-11 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 205
Acc65I GGTACC 1 cut(s) 580
AccB1I GGYRCC 1 cut(s) 580
AccII CGCG 1 cut(s) 334
AciI CCGC 5 cut(s) 332, 334, 399, 1022, 1194
AclWI GGATC 1 cut(s) 1164
AcsI RAATTY 1 cut(s) 1117
AcyI GRCGYC 1 cut(s) 831
AfaI GTAC 8 cut(s) 30, 496, 506, 556, 582, 683, 925, 1265
AfiI CCNNNNNNNGG 3 cut(s) 696, 767, 813
AflIII ACRYGT 1 cut(s) 636
AgsI TTSAA 2 cut(s) 421, 1153
AjnI CCWGG 3 cut(s) 300, 359, 1036
AluBI AGCT 7 cut(s) 194, 371, 572, 710, 812, 840, 896
AluI AGCT 7 cut(s) 194, 371, 572, 710, 812, 840, 896
Alw21I GWGCWC 1 cut(s) 814
Alw26I GTCTC 4 cut(s) 239, 281, 322, 688
AlwI GGATC 1 cut(s) 1164
Ama87I CYCGRG 1 cut(s) 813
AoxI GGCC 2 cut(s) 135, 931
ApeKI GCWGC 2 cut(s) 377, 428
ApoI RAATTY 1 cut(s) 1117
AseI ATTAAT 1 cut(s) 60
Asp700I GAANNNNTTC 1 cut(s) 657
Asp718I GGTACC 1 cut(s) 580
AspS9I GGNCC 4 cut(s) 136, 336, 962, 1248
AsuC2I CCSGG 1 cut(s) 350
AsuHPI GGTGA 2 cut(s) 316, 1007
AvaI CYCGRG 1 cut(s) 813
AvaII GGWCC 3 cut(s) 336, 962, 1248
BanI GGYRCC 1 cut(s) 580
BanII GRGCYC 1 cut(s) 814
Bbv12I GWGCWC 1 cut(s) 814
BbvI GCAGC 2 cut(s) 364, 440
BccI CCATC 2 cut(s) 277, 475
BceAI ACGGC 3 cut(s) 365, 386, 758
BcgI CGANNNNNNTGC 2 cut(s) 508, 542
BciT130I CCWGG 3 cut(s) 302, 361, 1038
BcnI CCSGG 1 cut(s) 350
BcoDI GTCTC 4 cut(s) 239, 281, 322, 688
BfaI CTAG 1 cut(s) 1001
BfmI CTRYAG 3 cut(s) 705, 835, 891
BisI GCNGC 2 cut(s) 378, 429
BlsI GCNGC 2 cut(s) 379, 430
BmcAI AGTACT 1 cut(s) 556
Bme1390I CCNGG 4 cut(s) 302, 350, 361, 1038
Bme18I GGWCC 3 cut(s) 336, 962, 1248
BmeT110I CYCGRG 1 cut(s) 813
BmgT120I GGNCC 4 cut(s) 136, 336, 962, 1248
BmiI GGNNCC 3 cut(s) 138, 582, 1249
BmrFI CCNGG 4 cut(s) 302, 350, 361, 1038
BmsI GCATC 2 cut(s) 1033, 1044
BpuMI CCSGG 1 cut(s) 350
BsaHI GRCGYC 1 cut(s) 831
BsaJI CCNNGG 6 cut(s) 300, 332, 348, 1036, 1037, 1276
Bsc4I CCNNNNNNNGG 3 cut(s) 696, 767, 813
Bse1I ACTGG 3 cut(s) 205, 314, 912
Bse3DI GCAATG 2 cut(s) 624, 952
BseBI CCWGG 3 cut(s) 302, 361, 1038
BseDI CCNNGG 6 cut(s) 300, 332, 348, 1036, 1037, 1276
BseGI GGATG 1 cut(s) 1014
BseLI CCNNNNNNNGG 3 cut(s) 696, 767, 813
BseMI GCAATG 2 cut(s) 624, 952
BseMII CTCAG 1 cut(s) 683
BseNI ACTGG 3 cut(s) 205, 314, 912
BseRI GAGGAG 1 cut(s) 310
BseXI GCAGC 2 cut(s) 364, 440
Bsh1236I CGCG 1 cut(s) 334
BshFI GGCC 2 cut(s) 137, 933
BshNI GGYRCC 1 cut(s) 580
BsiHKAI GWGCWC 1 cut(s) 814
BsiHKCI CYCGRG 1 cut(s) 813
BsiSI CCGG 3 cut(s) 134, 350, 807
BsiWI CGTACG 1 cut(s) 28
BslFI GGGAC 2 cut(s) 112, 193
BslI CCNNNNNNNGG 3 cut(s) 696, 767, 813
BsmAI GTCTC 4 cut(s) 239, 281, 322, 688
BsmBI CGTCTC 2 cut(s) 281, 688
BsmFI GGGAC 2 cut(s) 112, 193
BsnI GGCC 2 cut(s) 137, 933
BsoBI CYCGRG 1 cut(s) 813
Bsp1286I GDGCHC 1 cut(s) 814
Bsp1407I TGTACA 2 cut(s) 494, 681
Bsp143I GATC 2 cut(s) 525, 1156
BspACI CCGC 5 cut(s) 332, 334, 399, 1022, 1194
BspANI GGCC 2 cut(s) 137, 933
BspCNI CTCAG 1 cut(s) 684
BspFNI CGCG 1 cut(s) 334
BspLI GGNNCC 3 cut(s) 138, 582, 1249
BspPI GGATC 1 cut(s) 1164
BspT107I GGYRCC 1 cut(s) 580
BsrDI GCAATG 2 cut(s) 624, 952
BsrGI TGTACA 2 cut(s) 494, 681
BsrI ACTGG 3 cut(s) 205, 314, 912
BssECI CCNNGG 6 cut(s) 300, 332, 348, 1036, 1037, 1276
BssMI GATC 2 cut(s) 525, 1156
BssNI GRCGYC 1 cut(s) 831
Bst2UI CCWGG 3 cut(s) 302, 361, 1038
Bst4CI ACNGT 4 cut(s) 706, 995, 1188, 1268
Bst6I CTCTTC 2 cut(s) 442, 612
BstACI GRCGYC 1 cut(s) 831
BstAPI GCANNNNNTGC 1 cut(s) 803
BstAUI TGTACA 2 cut(s) 494, 681
BstC8I GCNNGC 1 cut(s) 1196
BstDEI CTNAG 2 cut(s) 692, 920
BstDSI CCRYGG 1 cut(s) 332
BstEII GGTNACC 1 cut(s) 995
BstF5I GGATG 1 cut(s) 1014
BstFNI CGCG 1 cut(s) 334
BstKTI GATC 2 cut(s) 528, 1159
BstMAI GTCTC 4 cut(s) 239, 281, 322, 688
BstMBI GATC 2 cut(s) 525, 1156
BstMWI GCNNNNNNNGC 3 cut(s) 377, 803, 893
BstNI CCWGG 3 cut(s) 302, 361, 1038
BstNSI RCATGY 1 cut(s) 640
BstPI GGTNACC 1 cut(s) 995
BstSCI CCNGG 4 cut(s) 300, 348, 359, 1036
BstSFI CTRYAG 3 cut(s) 705, 835, 891
BstUI CGCG 1 cut(s) 334
BstV1I GCAGC 2 cut(s) 364, 440
BstX2I RGATCY 1 cut(s) 1156
BstYI RGATCY 1 cut(s) 1156
BsuRI GGCC 2 cut(s) 137, 933
BtgI CCRYGG 1 cut(s) 332
BtgZI GCGATG 1 cut(s) 368
BtsCI GGATG 1 cut(s) 1014
BtsI GCAGTG 2 cut(s) 148, 778
BtsIMutI CAGTG 4 cut(s) 148, 509, 778, 919
Cac8I GCNNGC 1 cut(s) 1196
Cfr13I GGNCC 4 cut(s) 136, 336, 962, 1248
Cfr42I CCGCGG 1 cut(s) 335
CseI GACGC 2 cut(s) 215, 839
Csp6I GTAC 8 cut(s) 29, 495, 505, 555, 581, 682, 924, 1264
CviAII CATG 2 cut(s) 391, 637
CviQI GTAC 8 cut(s) 29, 495, 505, 555, 581, 682, 924, 1264
DdeI CTNAG 2 cut(s) 692, 920
DpnI GATC 2 cut(s) 527, 1158
DpnII GATC 2 cut(s) 525, 1156
DrdI GACNNNNNNGTC 1 cut(s) 205
DseDI GACNNNNNNGTC 1 cut(s) 205
Eam1104I CTCTTC 2 cut(s) 442, 612
EarI CTCTTC 2 cut(s) 442, 612
EciI GGCGGA 1 cut(s) 388
Ecl136II GAGCTC 1 cut(s) 812
Eco24I GRGCYC 1 cut(s) 814
Eco47I GGWCC 3 cut(s) 336, 962, 1248
Eco53kI GAGCTC 1 cut(s) 812
Eco88I CYCGRG 1 cut(s) 813
Eco91I GGTNACC 1 cut(s) 995
EcoICRI GAGCTC 1 cut(s) 812
EcoO109I RGGNCCY 1 cut(s) 1248
EcoO65I GGTNACC 1 cut(s) 995
EcoRI GAATTC 1 cut(s) 1117
EcoRII CCWGG 3 cut(s) 300, 359, 1036
EcoT38I GRGCYC 1 cut(s) 814
Esp3I CGTCTC 2 cut(s) 281, 688
FaeI CATG 2 cut(s) 394, 640
FaqI GGGAC 2 cut(s) 112, 193
FatI CATG 2 cut(s) 390, 636
FauI CCCGC 2 cut(s) 1029, 1187
FauNDI CATATG 1 cut(s) 866
Fnu4HI GCNGC 2 cut(s) 378, 429
FokI GGATG 1 cut(s) 1021
FriOI GRGCYC 1 cut(s) 814
Fsp4HI GCNGC 2 cut(s) 378, 429
FspBI CTAG 1 cut(s) 1001
GluI GCNGC 2 cut(s) 378, 429
HaeIII GGCC 2 cut(s) 137, 933
HapII CCGG 3 cut(s) 134, 350, 807
HgaI GACGC 2 cut(s) 215, 839
Hin1I GRCGYC 1 cut(s) 831
Hin1II CATG 2 cut(s) 394, 640
HindIII AAGCTT 1 cut(s) 192
HinfI GANTC 6 cut(s) 99, 143, 232, 242, 598, 653
HpaII CCGG 3 cut(s) 134, 350, 807
HphI GGTGA 2 cut(s) 316, 1007
Hpy166II GTNNAC 5 cut(s) 35, 495, 684, 962, 1271
Hpy188I TCNGA 6 cut(s) 231, 247, 561, 1116, 1172, 1277
Hpy188III TCNNGA 5 cut(s) 210, 221, 409, 478, 815
Hpy8I GTNNAC 5 cut(s) 35, 495, 684, 962, 1271
Hpy99I CGWCG 1 cut(s) 493
HpyAV CCTTC 3 cut(s) 242, 998, 1147
HpyCH4III ACNGT 4 cut(s) 706, 995, 1188, 1268
HpyCH4IV ACGT 2 cut(s) 31, 593
HpyCH4V TGCA 7 cut(s) 458, 519, 617, 797, 860, 870, 945
HpyF10VI GCNNNNNNNGC 3 cut(s) 377, 803, 893
HpyF3I CTNAG 2 cut(s) 692, 920
HpySE526I ACGT 2 cut(s) 31, 593
Hsp92I GRCGYC 1 cut(s) 831
Hsp92II CATG 2 cut(s) 394, 640
KpnI GGTACC 1 cut(s) 584
KspI CCGCGG 1 cut(s) 335
Kzo9I GATC 2 cut(s) 525, 1156
LmnI GCTCC 2 cut(s) 368, 809
Lsp1109I GCAGC 2 cut(s) 364, 440
LweI GCATC 2 cut(s) 1033, 1044
MaeI CTAG 1 cut(s) 1001
MaeII ACGT 2 cut(s) 31, 593
MaeIII GTNAC 3 cut(s) 643, 995, 1182
MalI GATC 2 cut(s) 527, 1158
MboI GATC 2 cut(s) 525, 1156
MboII GAAGA 4 cut(s) 275, 429, 535, 599
MfeI CAATTG 1 cut(s) 798
MflI RGATCY 1 cut(s) 1156
MhlI GDGCHC 1 cut(s) 814
MlyI GAGTC 3 cut(s) 137, 236, 241
MmeI TCCRAC 1 cut(s) 348
MnlI CCTC 6 cut(s) 249, 253, 331, 443, 621, 1271
MroXI GAANNNNTTC 1 cut(s) 657
MseI TTAA 5 cut(s) 60, 177, 588, 990, 1214
MslI CAYNNNNRTG 1 cut(s) 514
MspA1I CMGCKG 2 cut(s) 334, 572
MspI CCGG 3 cut(s) 134, 350, 807
MspR9I CCNGG 4 cut(s) 302, 350, 361, 1038
MunI CAATTG 1 cut(s) 798
MvaI CCWGG 3 cut(s) 302, 361, 1038
MvnI CGCG 1 cut(s) 334
MwoI GCNNNNNNNGC 3 cut(s) 377, 803, 893
NciI CCSGG 1 cut(s) 350
NdeI CATATG 1 cut(s) 866
NdeII GATC 2 cut(s) 525, 1156
NlaIII CATG 2 cut(s) 394, 640
NlaIV GGNNCC 3 cut(s) 138, 582, 1249
NmuCI GTSAC 1 cut(s) 995
NspI RCATGY 1 cut(s) 640
PasI CCCWGGG 1 cut(s) 1037
PciI ACATGT 1 cut(s) 636
PdmI GAANNNNTTC 1 cut(s) 657
PfeI GAWTC 3 cut(s) 99, 598, 653
Pfl23II CGTACG 1 cut(s) 28
PkrI GCNGC 2 cut(s) 379, 430
PleI GAGTC 3 cut(s) 137, 236, 240
PpsI GAGTC 3 cut(s) 137, 236, 240
PpuMI RGGWCCY 1 cut(s) 1248
PscI ACATGT 1 cut(s) 636
PshBI ATTAAT 1 cut(s) 60
Psp124BI GAGCTC 1 cut(s) 814
Psp5II RGGWCCY 1 cut(s) 1248
Psp6I CCWGG 3 cut(s) 300, 359, 1036
PspEI GGTNACC 1 cut(s) 995
PspGI CCWGG 3 cut(s) 300, 359, 1036
PspLI CGTACG 1 cut(s) 28
PspN4I GGNNCC 3 cut(s) 138, 582, 1249
PspPI GGNCC 4 cut(s) 136, 336, 962, 1248
PspPPI RGGWCCY 1 cut(s) 1248
PsuI RGATCY 1 cut(s) 1156
PvuII CAGCTG 1 cut(s) 572
RsaI GTAC 8 cut(s) 30, 496, 506, 556, 582, 683, 925, 1265
RsaNI GTAC 8 cut(s) 29, 495, 505, 555, 581, 682, 924, 1264
RseI CAYNNNNRTG 1 cut(s) 514
SacI GAGCTC 1 cut(s) 814
SacII CCGCGG 1 cut(s) 335
SaqAI TTAA 5 cut(s) 60, 177, 588, 990, 1214
SatI GCNGC 2 cut(s) 378, 429
Sau3AI GATC 2 cut(s) 525, 1156
Sau96I GGNCC 4 cut(s) 136, 336, 962, 1248
ScaI AGTACT 1 cut(s) 556
SchI GAGTC 3 cut(s) 137, 236, 241
ScrFI CCNGG 4 cut(s) 302, 350, 361, 1038
SduI GDGCHC 1 cut(s) 814
SfaNI GCATC 2 cut(s) 1033, 1044
SfcI CTRYAG 3 cut(s) 705, 835, 891
Sfr303I CCGCGG 1 cut(s) 335
SgrBI CCGCGG 1 cut(s) 335
SinI GGWCC 3 cut(s) 336, 962, 1248
SmiMI CAYNNNNRTG 1 cut(s) 514
SsiI CCGC 5 cut(s) 332, 334, 399, 1022, 1194
SspI AATATT 2 cut(s) 7, 121
SspMI CTAG 1 cut(s) 1001
SstI GAGCTC 1 cut(s) 814
StyD4I CCNGG 4 cut(s) 300, 348, 359, 1036
TaaI ACNGT 4 cut(s) 706, 995, 1188, 1268
TaiI ACGT 2 cut(s) 34, 596
TaqI TCGA 1 cut(s) 197
TatI WGTACW 3 cut(s) 494, 554, 681
TfiI GAWTC 3 cut(s) 99, 598, 653
Tru1I TTAA 5 cut(s) 60, 177, 588, 990, 1214
Tru9I TTAA 5 cut(s) 60, 177, 588, 990, 1214
TscAI CASTG 4 cut(s) 155, 516, 778, 919
TseFI GTSAC 1 cut(s) 995
TseI GCWGC 2 cut(s) 377, 428
Tsp45I GTSAC 1 cut(s) 995
TspDTI ATGAA 2 cut(s) 17, 744
TspGWI ACGGA 3 cut(s) 114, 305, 712
TspRI CASTG 4 cut(s) 155, 516, 778, 919
VpaK11BI GGWCC 3 cut(s) 336, 962, 1248
VspI ATTAAT 1 cut(s) 60
XapI RAATTY 1 cut(s) 1117
XceI RCATGY 1 cut(s) 640
XmnI GAANNNNTTC 1 cut(s) 657
XspI CTAG 1 cut(s) 1001
ZrmI AGTACT 1 cut(s) 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.