Rh2CG031600

UDP-sugar transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0009640
Physical Location & Seq
Forward (+)
2386763 .. 2390795
4033 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG031600.1

Sequence Viewer

Length: 702 bp
ATGGTATCGTCATGTGCATTGCTGTATGCACTGAAATACTGGAAGATTATTTCTTTCACAGTCGAGCCACATAGCACTACGAACAATCCAGTTACCCTTGTACCATTGAAGACGTTGGTACACACTCTTCCTCTCGCGATGTCTTATTTGCTGTACATGTTGGTTACAATGGAATCAGTCCGTGGTATAAATGTTCCCATGTACACCACCCTTAGACGAACCACTATAGCTTTTACAATGGTCGTTGAGTATATTTTGACGGGGCAGAAACATTCATATCGTGTTTTGGGCAGTGTGGGGATAATTATACTGGGTGCATTTATTGCTGGAGCTCGGGATCTATCATTTGATGCCTATGGCTATGCTGTTGTCTTTGTTGCAAACATCTCTACAGCAATATATCTTGCTTCTATAGCTCATATTGGTAAATCAAGTGGTCTTAGTACGTTTGGCTTAATGTGGTGCAATGGAATAATATGTGGACCAGTCTTGCTGTTTTGGACATCAATCAGAGGTGATCTAACAGGGATGATGAACTTCTCACATATATTCTCCCCTGGTTTTCAGGCCGTGATGCTTCTTTCCTGTGTTATGGCTTTTTCAATAAATTATTGCGTGTTTTGGAATACAACCCTCAATTCAGCTCTCACACAGACAATTTGTGGTAATCTGAAGGTGTGTAACATTCATTTCGGACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

233

Amino Acids

25.59

Weight (kDa)

9.0

Isoelectric Point (pI)

29.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 31 - 225 1.6e-06 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 137
AclWI GGATC 1 cut(s) 345
AcuI CTGAAG 1 cut(s) 692
AfaI GTAC 5 cut(s) 102, 120, 155, 203, 445
AflIII ACRYGT 1 cut(s) 156
AgsI TTSAA 2 cut(s) 109, 603
AjnI CCWGG 1 cut(s) 556
AluBI AGCT 4 cut(s) 230, 332, 416, 644
AluI AGCT 4 cut(s) 230, 332, 416, 644
Alw21I GWGCWC 1 cut(s) 334
AlwI GGATC 1 cut(s) 345
Ama87I CYCGRG 1 cut(s) 333
AoxI GGCC 1 cut(s) 567
AspS9I GGNCC 2 cut(s) 482, 695
AsuHPI GGTGA 1 cut(s) 527
AvaI CYCGRG 1 cut(s) 333
AvaII GGWCC 2 cut(s) 482, 695
BaeI ACNNNNGTAYC 2 cut(s) 84, 117
BanII GRGCYC 1 cut(s) 334
BarI GAAGNNNNNNTAC 2 cut(s) 111, 143
BbsI GAAGAC 1 cut(s) 116
Bbv12I GWGCWC 1 cut(s) 334
BceAI ACGGC 1 cut(s) 554
BciT130I CCWGG 1 cut(s) 558
BfmI CTRYAG 3 cut(s) 225, 390, 411
Bme1390I CCNGG 1 cut(s) 558
Bme18I GGWCC 2 cut(s) 482, 695
BmeT110I CYCGRG 1 cut(s) 333
BmgT120I GGNCC 2 cut(s) 482, 695
BmrFI CCNGG 1 cut(s) 558
BmrI ACTGGG 1 cut(s) 320
BmsI GCATC 2 cut(s) 340, 564
BmuI ACTGGG 1 cut(s) 320
BpiI GAAGAC 1 cut(s) 116
BpmI CTGGAG 1 cut(s) 348
BsaJI CCNNGG 2 cut(s) 181, 556
Bse1I ACTGG 4 cut(s) 44, 89, 315, 485
Bse3DI GCAATG 2 cut(s) 17, 472
BseBI CCWGG 1 cut(s) 558
BseDI CCNNGG 2 cut(s) 181, 556
BseGI GGATG 1 cut(s) 534
BseMI GCAATG 2 cut(s) 17, 472
BseNI ACTGG 4 cut(s) 44, 89, 315, 485
Bsh1236I CGCG 1 cut(s) 137
BshFI GGCC 1 cut(s) 569
BsiHKAI GWGCWC 1 cut(s) 334
BsiHKCI CYCGRG 1 cut(s) 333
BsnI GGCC 1 cut(s) 569
BsoBI CYCGRG 1 cut(s) 333
Bsp1286I GDGCHC 1 cut(s) 334
Bsp1407I TGTACA 2 cut(s) 153, 201
Bsp143I GATC 2 cut(s) 337, 517
Bsp68I TCGCGA 1 cut(s) 137
BspANI GGCC 1 cut(s) 569
BspFNI CGCG 1 cut(s) 137
BspPI GGATC 1 cut(s) 345
BsrDI GCAATG 2 cut(s) 17, 472
BsrGI TGTACA 2 cut(s) 153, 201
BsrI ACTGG 4 cut(s) 44, 89, 315, 485
BssECI CCNNGG 2 cut(s) 181, 556
BssMI GATC 2 cut(s) 337, 517
Bst2UI CCWGG 1 cut(s) 558
Bst4CI ACNGT 1 cut(s) 61
Bst6I CTCTTC 1 cut(s) 132
BstAPI GCANNNNNTGC 1 cut(s) 323
BstAUI TGTACA 2 cut(s) 153, 201
BstDEI CTNAG 3 cut(s) 212, 440, 699
BstDSI CCRYGG 1 cut(s) 181
BstF5I GGATG 1 cut(s) 534
BstFNI CGCG 1 cut(s) 137
BstKTI GATC 2 cut(s) 340, 520
BstMBI GATC 2 cut(s) 337, 517
BstMWI GCNNNNNNNGC 2 cut(s) 323, 413
BstNI CCWGG 1 cut(s) 558
BstNSI RCATGY 1 cut(s) 160
BstSCI CCNGG 1 cut(s) 556
BstSFI CTRYAG 3 cut(s) 225, 390, 411
BstUI CGCG 1 cut(s) 137
BstV2I GAAGAC 1 cut(s) 116
BstX2I RGATCY 1 cut(s) 337
BstYI RGATCY 1 cut(s) 337
BsuRI GGCC 1 cut(s) 569
BtgI CCRYGG 1 cut(s) 181
BtgZI GCGATG 1 cut(s) 152
BtsCI GGATG 1 cut(s) 534
BtsI GCAGTG 1 cut(s) 298
BtsIMutI CAGTG 2 cut(s) 29, 298
BtuMI TCGCGA 1 cut(s) 137
Cfr13I GGNCC 2 cut(s) 482, 695
Csp6I GTAC 5 cut(s) 101, 119, 154, 202, 444
CviAII CATG 3 cut(s) 12, 157, 199
CviJI RGCY 9 cut(s) 67, 230, 332, 360, 416, 453, 569, 596, 644
CviKI_1 RGCY 9 cut(s) 67, 230, 332, 360, 416, 453, 569, 596, 644
CviQI GTAC 5 cut(s) 101, 119, 154, 202, 444
DdeI CTNAG 3 cut(s) 212, 440, 699
DpnI GATC 2 cut(s) 339, 519
DpnII GATC 2 cut(s) 337, 517
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Ecl136II GAGCTC 1 cut(s) 332
Eco24I GRGCYC 1 cut(s) 334
Eco47I GGWCC 2 cut(s) 482, 695
Eco53kI GAGCTC 1 cut(s) 332
Eco57I CTGAAG 1 cut(s) 692
Eco88I CYCGRG 1 cut(s) 333
EcoICRI GAGCTC 1 cut(s) 332
EcoRII CCWGG 1 cut(s) 556
EcoT38I GRGCYC 1 cut(s) 334
FaeI CATG 3 cut(s) 15, 160, 202
FatI CATG 3 cut(s) 11, 156, 198
FokI GGATG 1 cut(s) 541
FriOI GRGCYC 1 cut(s) 334
GsuI CTGGAG 1 cut(s) 348
HaeIII GGCC 1 cut(s) 569
Hin1II CATG 3 cut(s) 15, 160, 202
HinfI GANTC 1 cut(s) 173
HphI GGTGA 1 cut(s) 527
Hpy166II GTNNAC 3 cut(s) 121, 204, 482
Hpy188I TCNGA 3 cut(s) 512, 672, 695
Hpy188III TCNNGA 2 cut(s) 136, 335
Hpy8I GTNNAC 3 cut(s) 121, 204, 482
HpyAV CCTTC 1 cut(s) 667
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4IV ACGT 2 cut(s) 113, 446
HpyCH4V TGCA 5 cut(s) 17, 29, 317, 380, 465
HpyF10VI GCNNNNNNNGC 2 cut(s) 323, 413
HpyF3I CTNAG 3 cut(s) 212, 440, 699
HpySE526I ACGT 2 cut(s) 113, 446
Hsp92II CATG 3 cut(s) 15, 160, 202
Kzo9I GATC 2 cut(s) 337, 517
LmnI GCTCC 1 cut(s) 329
LweI GCATC 2 cut(s) 340, 564
MaeII ACGT 2 cut(s) 113, 446
MaeIII GTNAC 3 cut(s) 91, 163, 680
MalI GATC 2 cut(s) 339, 519
MboI GATC 2 cut(s) 337, 517
MboII GAAGA 3 cut(s) 55, 119, 121
MflI RGATCY 1 cut(s) 337
MhlI GDGCHC 1 cut(s) 334
MluCI AATT 4 cut(s) 303, 607, 637, 657
MnlI CCTC 3 cut(s) 141, 506, 644
MseI TTAA 1 cut(s) 455
MspR9I CCNGG 1 cut(s) 558
MvaI CCWGG 1 cut(s) 558
MvnI CGCG 1 cut(s) 137
MwoI GCNNNNNNNGC 2 cut(s) 323, 413
NdeII GATC 2 cut(s) 337, 517
NlaIII CATG 3 cut(s) 15, 160, 202
NruI TCGCGA 1 cut(s) 137
NspI RCATGY 1 cut(s) 160
PciI ACATGT 1 cut(s) 156
PfeI GAWTC 1 cut(s) 173
PscI ACATGT 1 cut(s) 156
Psp124BI GAGCTC 1 cut(s) 334
Psp6I CCWGG 1 cut(s) 556
PspGI CCWGG 1 cut(s) 556
PspPI GGNCC 2 cut(s) 482, 695
PsuI RGATCY 1 cut(s) 337
RruI TCGCGA 1 cut(s) 137
RsaI GTAC 5 cut(s) 102, 120, 155, 203, 445
RsaNI GTAC 5 cut(s) 101, 119, 154, 202, 444
SacI GAGCTC 1 cut(s) 334
SaqAI TTAA 1 cut(s) 455
Sau3AI GATC 2 cut(s) 337, 517
Sau96I GGNCC 2 cut(s) 482, 695
ScrFI CCNGG 1 cut(s) 558
SduI GDGCHC 1 cut(s) 334
SetI ASST 9 cut(s) 116, 232, 334, 418, 449, 517, 646, 678, 700
SfaNI GCATC 2 cut(s) 340, 564
SfcI CTRYAG 3 cut(s) 225, 390, 411
SinI GGWCC 2 cut(s) 482, 695
Sse9I AATT 4 cut(s) 303, 607, 637, 657
SstI GAGCTC 1 cut(s) 334
StyD4I CCNGG 1 cut(s) 556
TaaI ACNGT 1 cut(s) 61
TaiI ACGT 2 cut(s) 116, 449
TaqI TCGA 1 cut(s) 63
TasI AATT 4 cut(s) 303, 607, 637, 657
TatI WGTACW 2 cut(s) 153, 201
TfiI GAWTC 1 cut(s) 173
Tru1I TTAA 1 cut(s) 455
Tru9I TTAA 1 cut(s) 455
TscAI CASTG 2 cut(s) 36, 298
TspDTI ATGAA 3 cut(s) 264, 548, 677
TspGWI ACGGA 1 cut(s) 170
TspRI CASTG 2 cut(s) 36, 298
VpaK11BI GGWCC 2 cut(s) 482, 695
XceI RCATGY 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.