Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009640

Physical Location & Seq

Genomic Coordinates Reverse (-)

90074488 .. 90078329

Gene Structure 3842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00153310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGAGACAGAGAAGAACCAGAAATTACCAGTCTTGAACCAGAAACGTCCGGCAATGACCAAGAAAGGAGCTTATGCTGCCATCTCGTATATGGCCTCCGCAGTTCTCTTGATAATGTTCAACAAAGCAGCCCTTTCTTCATACAATTTCCAATCTGCAAATGTCATCACTCTTTTTCAGATGGTATCATCATGTGCATTGCTGTATGCACTGAAATACTGGAAGATTATTTCATTCACAGTCGAGCCACATAGCACTACAAACAATCCAGTTACCCTTGTACCATTGAAGACGTTGGTACACACTCTTCCTCTCGCGATGTCTTATTTGCTTTACATGGACTTCATCAGTGTGGGGATAATTATACTGGGTGCATTTATTGCTGGAGCTCGGGATCTGTCATTTGATGCCTATGGCTATGCTGTTGTCTTTGTTGCAAACATCTCTACAGCAATATATCTTGCTTCTATAGCTCATATTGGTAAATCAAGTGGTCTTAGTACGTTTGGCTTAATGTGGTGCAATGGAATAATATGTGGACCAGTCTTGCTGTTTTGGACATCAATCAGAGGTGATCTAACAGGGATGATGAACTTCTCACATATATTCTCCCCTGGTTTTCAGGCCGTGATGCTTCTTTCCTGTGTTATGGCTTTTTCAATAAATTATTGCGTGTTTTGGAATACAACCCTCAATTCAGCTCTCACACAGACAATTTGTGGTAATCTGAAGGATCTTCTGACTATTGGACTTGGCTGGTTGCTATTTGGAGGACTTCCATTTGATTTGTTAAATGTTGCTGGCCAATCTCTTGGTTTTCTCGGGTCCTGCTTATATGCTTACTGTAAACTCAGAGGGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

287

Amino Acids

31.32

Weight (kDa)

9.07

Isoelectric Point (pI)

36.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009640)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02630 FvH4_1g02630 FvH4_1g02630
malus_domestica	MD02G1027300.v1.1
prunus_persica	Prupe.7G247800_v2.0.a1 Prupe.7G247800_v2.0.a1 Prupe.7G247800_v2.0.a1 Prupe.7G247800_v2.0.a1 Prupe.7G247800_v2.0.a1 Prupe.7G247800_v2.0.a1 Prupe.7G247800_v2.0.a1
pyrus_communis	pycom02g02220
rosa_chinensis	RchiOBHm_Chr2g0087661
rosa_laevigata	RLG00000015890
rosa_multiflora	Rmu_sc0009180.1_g000001
rosa_roxburghii	Rroxscaffold_2G00153310
rosa_rugosa	Rorug01G0478000
rosa_samantha	Rh2AG032100 Rh2BG031100 Rh2CG031600 Rh2DG031600
rosa_wichuraiana	Rw2G002500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	317
AciI	CCGC	1 cut(s)	99
AclWI	GGATC	2 cut(s)	402, 741
AcoI	YGGCCR	1 cut(s)	802
AcuI	CTGAAG	1 cut(s)	749
AfaI	GTAC	3 cut(s)	282, 300, 502
AgsI	TTSAA	4 cut(s)	37, 121, 289, 660
AjnI	CCWGG	1 cut(s)	613
AluBI	AGCT	4 cut(s)	71, 389, 473, 701
AluI	AGCT	4 cut(s)	71, 389, 473, 701
Alw21I	GWGCWC	1 cut(s)	391
AlwI	GGATC	2 cut(s)	402, 741
Ama87I	CYCGRG	2 cut(s)	390, 821
AoxI	GGCC	3 cut(s)	93, 624, 802
ApeKI	GCWGC	2 cut(s)	77, 128
AspS9I	GGNCC	2 cut(s)	539, 825
AsuHPI	GGTGA	1 cut(s)	584
AvaI	CYCGRG	2 cut(s)	390, 821
AvaII	GGWCC	2 cut(s)	539, 825
BaeI	ACNNNNGTAYC	2 cut(s)	264, 297
BalI	TGGCCA	1 cut(s)	804
BanII	GRGCYC	1 cut(s)	391
BarI	GAAGNNNNNNTAC	2 cut(s)	291, 323
BbsI	GAAGAC	1 cut(s)	296
Bbv12I	GWGCWC	1 cut(s)	391
BbvI	GCAGC	2 cut(s)	64, 140
BccI	CCATC	2 cut(s)	89, 175
BceAI	ACGGC	1 cut(s)	611
BciT130I	CCWGG	1 cut(s)	615
BfmI	CTRYAG	2 cut(s)	447, 468
BisI	GCNGC	2 cut(s)	78, 129
BlsI	GCNGC	2 cut(s)	79, 130
Bme1390I	CCNGG	1 cut(s)	615
Bme18I	GGWCC	2 cut(s)	539, 825
BmeT110I	CYCGRG	2 cut(s)	390, 821
BmgT120I	GGNCC	2 cut(s)	539, 825
BmiI	GGNNCC	1 cut(s)	826
BmrFI	CCNGG	1 cut(s)	615
BmrI	ACTGGG	1 cut(s)	377
BmsI	GCATC	2 cut(s)	397, 621
BmuI	ACTGGG	1 cut(s)	377
BpiI	GAAGAC	1 cut(s)	296
BpmI	CTGGAG	1 cut(s)	405
BsaJI	CCNNGG	1 cut(s)	613
Bse1I	ACTGG	5 cut(s)	29, 224, 269, 372, 542
Bse3DI	GCAATG	3 cut(s)	60, 197, 529
BseBI	CCWGG	1 cut(s)	615
BseDI	CCNNGG	1 cut(s)	613
BseGI	GGATG	1 cut(s)	591
BseMI	GCAATG	3 cut(s)	60, 197, 529
BseNI	ACTGG	5 cut(s)	29, 224, 269, 372, 542
BseXI	GCAGC	2 cut(s)	64, 140
Bsh1236I	CGCG	1 cut(s)	317
BshFI	GGCC	3 cut(s)	95, 626, 804
BsiHKAI	GWGCWC	1 cut(s)	391
BsiHKCI	CYCGRG	2 cut(s)	390, 821
BsiSI	CCGG	1 cut(s)	50
BsnI	GGCC	3 cut(s)	95, 626, 804
BsoBI	CYCGRG	2 cut(s)	390, 821
Bsp1286I	GDGCHC	1 cut(s)	391
Bsp143I	GATC	3 cut(s)	394, 574, 733
Bsp68I	TCGCGA	1 cut(s)	317
BspACI	CCGC	1 cut(s)	99
BspANI	GGCC	3 cut(s)	95, 626, 804
BspCNI	CTCAG	1 cut(s)	864
BspFNI	CGCG	1 cut(s)	317
BspLI	GGNNCC	1 cut(s)	826
BspPI	GGATC	2 cut(s)	402, 741
BsrDI	GCAATG	3 cut(s)	60, 197, 529
BsrI	ACTGG	5 cut(s)	29, 224, 269, 372, 542
BssECI	CCNNGG	1 cut(s)	613
BssMI	GATC	3 cut(s)	394, 574, 733
Bst2UI	CCWGG	1 cut(s)	615
Bst4CI	ACNGT	2 cut(s)	241, 845
Bst6I	CTCTTC	1 cut(s)	312
BstAPI	GCANNNNNTGC	1 cut(s)	380
BstC8I	GCNNGC	1 cut(s)	802
BstDEI	CTNAG	2 cut(s)	497, 851
BstF5I	GGATG	1 cut(s)	591
BstFNI	CGCG	1 cut(s)	317
BstKTI	GATC	3 cut(s)	397, 577, 736
BstMBI	GATC	3 cut(s)	394, 574, 733
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 380, 470
BstNI	CCWGG	1 cut(s)	615
BstSCI	CCNGG	1 cut(s)	613
BstSFI	CTRYAG	2 cut(s)	447, 468
BstUI	CGCG	1 cut(s)	317
BstV1I	GCAGC	2 cut(s)	64, 140
BstV2I	GAAGAC	1 cut(s)	296
BstX2I	RGATCY	2 cut(s)	394, 733
BstXI	CCANNNNNNTGG	1 cut(s)	812
BstYI	RGATCY	2 cut(s)	394, 733
BsuRI	GGCC	3 cut(s)	95, 626, 804
BtgZI	GCGATG	1 cut(s)	332
BtsCI	GGATG	1 cut(s)	591
BtsIMutI	CAGTG	2 cut(s)	209, 355
BtuMI	TCGCGA	1 cut(s)	317
Cac8I	GCNNGC	1 cut(s)	802
Cfr13I	GGNCC	2 cut(s)	539, 825
Csp6I	GTAC	3 cut(s)	281, 299, 501
CviAII	CATG	2 cut(s)	192, 337
CviQI	GTAC	3 cut(s)	281, 299, 501
DdeI	CTNAG	2 cut(s)	497, 851
DpnI	GATC	3 cut(s)	396, 576, 735
DpnII	GATC	3 cut(s)	394, 574, 733
EaeI	YGGCCR	1 cut(s)	802
Eam1104I	CTCTTC	1 cut(s)	312
EarI	CTCTTC	1 cut(s)	312
Ecl136II	GAGCTC	1 cut(s)	389
Eco24I	GRGCYC	1 cut(s)	391
Eco47I	GGWCC	2 cut(s)	539, 825
Eco53kI	GAGCTC	1 cut(s)	389
Eco57I	CTGAAG	1 cut(s)	749
Eco88I	CYCGRG	2 cut(s)	390, 821
EcoICRI	GAGCTC	1 cut(s)	389
EcoO109I	RGGNCCY	1 cut(s)	825
EcoRII	CCWGG	1 cut(s)	613
EcoT38I	GRGCYC	1 cut(s)	391
FaeI	CATG	2 cut(s)	195, 340
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
FatI	CATG	2 cut(s)	191, 336
Fnu4HI	GCNGC	2 cut(s)	78, 129
FokI	GGATG	1 cut(s)	598
FriOI	GRGCYC	1 cut(s)	391
Fsp4HI	GCNGC	2 cut(s)	78, 129
GluI	GCNGC	2 cut(s)	78, 129
GsuI	CTGGAG	1 cut(s)	405
HaeIII	GGCC	3 cut(s)	95, 626, 804
HapII	CCGG	1 cut(s)	50
Hin1II	CATG	2 cut(s)	195, 340
HpaII	CCGG	1 cut(s)	50
HphI	GGTGA	1 cut(s)	584
Hpy166II	GTNNAC	3 cut(s)	301, 539, 848
Hpy188I	TCNGA	5 cut(s)	180, 569, 729, 741, 854
Hpy188III	TCNNGA	4 cut(s)	34, 109, 316, 392
Hpy8I	GTNNAC	3 cut(s)	301, 539, 848
HpyAV	CCTTC	1 cut(s)	724
HpyCH4III	ACNGT	2 cut(s)	241, 845
HpyCH4IV	ACGT	3 cut(s)	46, 293, 503
HpyCH4V	TGCA	6 cut(s)	158, 197, 209, 374, 437, 522
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 380, 470
HpyF3I	CTNAG	2 cut(s)	497, 851
HpySE526I	ACGT	3 cut(s)	46, 293, 503
Hsp92II	CATG	2 cut(s)	195, 340
Kzo9I	GATC	3 cut(s)	394, 574, 733
LmnI	GCTCC	2 cut(s)	68, 386
Lsp1109I	GCAGC	2 cut(s)	64, 140
LweI	GCATC	2 cut(s)	397, 621
MaeII	ACGT	3 cut(s)	46, 293, 503
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	3 cut(s)	396, 576, 735
MboI	GATC	3 cut(s)	394, 574, 733
MboII	GAAGA	6 cut(s)	25, 129, 235, 299, 301, 728
MflI	RGATCY	2 cut(s)	394, 733
MhlI	GDGCHC	1 cut(s)	391
MlsI	TGGCCA	1 cut(s)	804
MluCI	AATT	6 cut(s)	23, 145, 360, 664, 694, 714
MluNI	TGGCCA	1 cut(s)	804
MnlI	CCTC	6 cut(s)	106, 321, 563, 701, 764, 848
Mox20I	TGGCCA	1 cut(s)	804
MscI	TGGCCA	1 cut(s)	804
MseI	TTAA	2 cut(s)	512, 791
MslI	CAYNNNNRTG	1 cut(s)	350
Msp20I	TGGCCA	1 cut(s)	804
MspI	CCGG	1 cut(s)	50
MspR9I	CCNGG	1 cut(s)	615
MvaI	CCWGG	1 cut(s)	615
MvnI	CGCG	1 cut(s)	317
MwoI	GCNNNNNNNGC	3 cut(s)	77, 380, 470
NdeII	GATC	3 cut(s)	394, 574, 733
NlaIII	CATG	2 cut(s)	195, 340
NlaIV	GGNNCC	1 cut(s)	826
NruI	TCGCGA	1 cut(s)	317
PkrI	GCNGC	2 cut(s)	79, 130
PpuMI	RGGWCCY	1 cut(s)	825
Psp124BI	GAGCTC	1 cut(s)	391
Psp5II	RGGWCCY	1 cut(s)	825
Psp6I	CCWGG	1 cut(s)	613
PspGI	CCWGG	1 cut(s)	613
PspN4I	GGNNCC	1 cut(s)	826
PspPI	GGNCC	2 cut(s)	539, 825
PspPPI	RGGWCCY	1 cut(s)	825
PsuI	RGATCY	2 cut(s)	394, 733
RruI	TCGCGA	1 cut(s)	317
RsaI	GTAC	3 cut(s)	282, 300, 502
RsaNI	GTAC	3 cut(s)	281, 299, 501
RseI	CAYNNNNRTG	1 cut(s)	350
SacI	GAGCTC	1 cut(s)	391
SaqAI	TTAA	2 cut(s)	512, 791
SatI	GCNGC	2 cut(s)	78, 129
Sau3AI	GATC	3 cut(s)	394, 574, 733
Sau96I	GGNCC	2 cut(s)	539, 825
ScrFI	CCNGG	1 cut(s)	615
SduI	GDGCHC	1 cut(s)	391
SetI	ASST	8 cut(s)	49, 73, 296, 391, 475, 506, 574, 703
SfaNI	GCATC	2 cut(s)	397, 621
SfcI	CTRYAG	2 cut(s)	447, 468
SinI	GGWCC	2 cut(s)	539, 825
SmiMI	CAYNNNNRTG	1 cut(s)	350
Sse9I	AATT	6 cut(s)	23, 145, 360, 664, 694, 714
SsiI	CCGC	1 cut(s)	99
SstI	GAGCTC	1 cut(s)	391
StyD4I	CCNGG	1 cut(s)	613
TaaI	ACNGT	2 cut(s)	241, 845
TaiI	ACGT	3 cut(s)	49, 296, 506
TaqI	TCGA	1 cut(s)	243
TasI	AATT	6 cut(s)	23, 145, 360, 664, 694, 714
Tru1I	TTAA	2 cut(s)	512, 791
Tru9I	TTAA	2 cut(s)	512, 791
TscAI	CASTG	2 cut(s)	216, 355
TseI	GCWGC	2 cut(s)	77, 128
TspDTI	ATGAA	4 cut(s)	129, 222, 334, 605
TspRI	CASTG	2 cut(s)	216, 355
VpaK11BI	GGWCC	2 cut(s)	539, 825
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.