Rh2DG031600

UDP-sugar transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0009640
Physical Location & Seq
Forward (+)
1936889 .. 1941347
4459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG031600.1

Sequence Viewer

Length: 807 bp
ATGGTATCGTCATGTGCATTGCTGTATGCAATGAAATACTGGAAGATTATTTCTTTCACAGTCGAGCCACATAGCACTACGAACAATCCAGTTACCCTTGTACCATTGAAGACGTTGGTACACACTCTTCCTCTCGCGATGTCTTATTTGCTTTACATGTTGGTTACAATGGAATCAGTCCGTGGTATAAATGTTCCCATGTACACCACCCTTAGACGAACCACTATAGCTTTTACAATGGTCGTTGAGTATATTTTGATGGGGCAGAAACATTCATATCGTGTTTTGGGCAGTGTGGGGATAATTATACTGGGTGCATTTATTGCTGGAGCTCGGGATCTATCATTTGATGCCTATGGCTATGCTGTTGTCTTTGTTGCAAACATCTCTACAGCAATATATCTTGCTTCTATAGCTCATATTGGTAAATCAAGTGGTCTTAGTACGTTTGGCTTAATGTGGTGCAATGGAATAATATGTGGACCAGTCTTGCTGTTTTGGACATCAATCAGAGGTGATCTAACAGGGATGATGAACTTCTCACATATATTCTCCCCTGGTTTTCAGGCCGTGATGCTTCTTTCCTGTGTTATGGCTTTTTCAATAAATTATTGCGTGTTTTGGAATACAACCATCAATTCAGCTCTCACACAGACAATTTGTGGTAATCTGAAGGATCTTCTGACCATTGGACTTGGCTGGTTGCTATTTGGAGGACTTCCATTTGATTTGTTAAATGTTGCTGGCCAATCTCTTGGTTTTCTCGGGTCCTGCTTGTATGCTTACTGTAAACTCAGAGGGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

268

Amino Acids

29.35

Weight (kDa)

9.01

Isoelectric Point (pI)

33.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 31 - 260 1.6e-10 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 137
AclWI GGATC 2 cut(s) 345, 684
AcoI YGGCCR 1 cut(s) 745
AcuI CTGAAG 1 cut(s) 692
AfaI GTAC 4 cut(s) 102, 120, 203, 445
AflIII ACRYGT 1 cut(s) 156
AgsI TTSAA 2 cut(s) 109, 603
AjnI CCWGG 1 cut(s) 556
AluBI AGCT 4 cut(s) 230, 332, 416, 644
AluI AGCT 4 cut(s) 230, 332, 416, 644
Alw21I GWGCWC 1 cut(s) 334
AlwI GGATC 2 cut(s) 345, 684
Ama87I CYCGRG 2 cut(s) 333, 764
AoxI GGCC 2 cut(s) 567, 745
AspS9I GGNCC 2 cut(s) 482, 768
AsuHPI GGTGA 1 cut(s) 527
AvaI CYCGRG 2 cut(s) 333, 764
AvaII GGWCC 2 cut(s) 482, 768
BaeI ACNNNNGTAYC 2 cut(s) 84, 117
BalI TGGCCA 1 cut(s) 747
BanII GRGCYC 1 cut(s) 334
BarI GAAGNNNNNNTAC 2 cut(s) 111, 143
BbsI GAAGAC 1 cut(s) 116
Bbv12I GWGCWC 1 cut(s) 334
BccI CCATC 2 cut(s) 253, 641
BceAI ACGGC 1 cut(s) 554
BciT130I CCWGG 1 cut(s) 558
BfmI CTRYAG 3 cut(s) 225, 390, 411
Bme1390I CCNGG 1 cut(s) 558
Bme18I GGWCC 2 cut(s) 482, 768
BmeT110I CYCGRG 2 cut(s) 333, 764
BmgT120I GGNCC 2 cut(s) 482, 768
BmiI GGNNCC 1 cut(s) 769
BmrFI CCNGG 1 cut(s) 558
BmrI ACTGGG 1 cut(s) 320
BmsI GCATC 2 cut(s) 340, 564
BmuI ACTGGG 1 cut(s) 320
BpiI GAAGAC 1 cut(s) 116
BpmI CTGGAG 1 cut(s) 348
BsaJI CCNNGG 2 cut(s) 181, 556
Bse1I ACTGG 4 cut(s) 44, 89, 315, 485
Bse3DI GCAATG 3 cut(s) 17, 36, 472
BseBI CCWGG 1 cut(s) 558
BseDI CCNNGG 2 cut(s) 181, 556
BseGI GGATG 1 cut(s) 534
BseMI GCAATG 3 cut(s) 17, 36, 472
BseNI ACTGG 4 cut(s) 44, 89, 315, 485
Bsh1236I CGCG 1 cut(s) 137
BshFI GGCC 2 cut(s) 569, 747
BsiHKAI GWGCWC 1 cut(s) 334
BsiHKCI CYCGRG 2 cut(s) 333, 764
BsnI GGCC 2 cut(s) 569, 747
BsoBI CYCGRG 2 cut(s) 333, 764
Bsp1286I GDGCHC 1 cut(s) 334
Bsp1407I TGTACA 1 cut(s) 201
Bsp143I GATC 3 cut(s) 337, 517, 676
Bsp68I TCGCGA 1 cut(s) 137
BspANI GGCC 2 cut(s) 569, 747
BspCNI CTCAG 1 cut(s) 807
BspFNI CGCG 1 cut(s) 137
BspLI GGNNCC 1 cut(s) 769
BspPI GGATC 2 cut(s) 345, 684
BsrDI GCAATG 3 cut(s) 17, 36, 472
BsrGI TGTACA 1 cut(s) 201
BsrI ACTGG 4 cut(s) 44, 89, 315, 485
BssECI CCNNGG 2 cut(s) 181, 556
BssMI GATC 3 cut(s) 337, 517, 676
Bst2UI CCWGG 1 cut(s) 558
Bst4CI ACNGT 2 cut(s) 61, 788
Bst6I CTCTTC 1 cut(s) 132
BstAPI GCANNNNNTGC 1 cut(s) 323
BstAUI TGTACA 1 cut(s) 201
BstC8I GCNNGC 1 cut(s) 745
BstDEI CTNAG 3 cut(s) 212, 440, 794
BstDSI CCRYGG 1 cut(s) 181
BstF5I GGATG 1 cut(s) 534
BstFNI CGCG 1 cut(s) 137
BstKTI GATC 3 cut(s) 340, 520, 679
BstMBI GATC 3 cut(s) 337, 517, 676
BstMWI GCNNNNNNNGC 2 cut(s) 323, 413
BstNI CCWGG 1 cut(s) 558
BstNSI RCATGY 1 cut(s) 160
BstSCI CCNGG 1 cut(s) 556
BstSFI CTRYAG 3 cut(s) 225, 390, 411
BstUI CGCG 1 cut(s) 137
BstV2I GAAGAC 1 cut(s) 116
BstX2I RGATCY 2 cut(s) 337, 676
BstXI CCANNNNNNTGG 1 cut(s) 755
BstYI RGATCY 2 cut(s) 337, 676
BsuRI GGCC 2 cut(s) 569, 747
BtgI CCRYGG 1 cut(s) 181
BtgZI GCGATG 1 cut(s) 152
BtsCI GGATG 1 cut(s) 534
BtsI GCAGTG 1 cut(s) 298
BtsIMutI CAGTG 1 cut(s) 298
BtuMI TCGCGA 1 cut(s) 137
Cac8I GCNNGC 1 cut(s) 745
Cfr13I GGNCC 2 cut(s) 482, 768
Csp6I GTAC 4 cut(s) 101, 119, 202, 444
CviAII CATG 3 cut(s) 12, 157, 199
CviQI GTAC 4 cut(s) 101, 119, 202, 444
DdeI CTNAG 3 cut(s) 212, 440, 794
DpnI GATC 3 cut(s) 339, 519, 678
DpnII GATC 3 cut(s) 337, 517, 676
EaeI YGGCCR 1 cut(s) 745
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Ecl136II GAGCTC 1 cut(s) 332
Eco24I GRGCYC 1 cut(s) 334
Eco47I GGWCC 2 cut(s) 482, 768
Eco53kI GAGCTC 1 cut(s) 332
Eco57I CTGAAG 1 cut(s) 692
Eco88I CYCGRG 2 cut(s) 333, 764
EcoICRI GAGCTC 1 cut(s) 332
EcoO109I RGGNCCY 1 cut(s) 768
EcoRII CCWGG 1 cut(s) 556
EcoT38I GRGCYC 1 cut(s) 334
FaeI CATG 3 cut(s) 15, 160, 202
FatI CATG 3 cut(s) 11, 156, 198
FokI GGATG 1 cut(s) 541
FriOI GRGCYC 1 cut(s) 334
GsuI CTGGAG 1 cut(s) 348
HaeIII GGCC 2 cut(s) 569, 747
Hin1II CATG 3 cut(s) 15, 160, 202
HinfI GANTC 1 cut(s) 173
HphI GGTGA 1 cut(s) 527
Hpy166II GTNNAC 4 cut(s) 121, 204, 482, 791
Hpy188I TCNGA 4 cut(s) 512, 672, 684, 797
Hpy188III TCNNGA 2 cut(s) 136, 335
Hpy8I GTNNAC 4 cut(s) 121, 204, 482, 791
HpyAV CCTTC 1 cut(s) 667
HpyCH4III ACNGT 2 cut(s) 61, 788
HpyCH4IV ACGT 2 cut(s) 113, 446
HpyCH4V TGCA 5 cut(s) 17, 29, 317, 380, 465
HpyF10VI GCNNNNNNNGC 2 cut(s) 323, 413
HpyF3I CTNAG 3 cut(s) 212, 440, 794
HpySE526I ACGT 2 cut(s) 113, 446
Hsp92II CATG 3 cut(s) 15, 160, 202
Kzo9I GATC 3 cut(s) 337, 517, 676
LmnI GCTCC 1 cut(s) 329
LweI GCATC 2 cut(s) 340, 564
MaeII ACGT 2 cut(s) 113, 446
MaeIII GTNAC 2 cut(s) 91, 163
MalI GATC 3 cut(s) 339, 519, 678
MboI GATC 3 cut(s) 337, 517, 676
MboII GAAGA 4 cut(s) 55, 119, 121, 671
MflI RGATCY 2 cut(s) 337, 676
MhlI GDGCHC 1 cut(s) 334
MlsI TGGCCA 1 cut(s) 747
MluCI AATT 4 cut(s) 303, 607, 637, 657
MluNI TGGCCA 1 cut(s) 747
MnlI CCTC 4 cut(s) 141, 506, 707, 791
Mox20I TGGCCA 1 cut(s) 747
MscI TGGCCA 1 cut(s) 747
MseI TTAA 2 cut(s) 455, 734
Msp20I TGGCCA 1 cut(s) 747
MspR9I CCNGG 1 cut(s) 558
MvaI CCWGG 1 cut(s) 558
MvnI CGCG 1 cut(s) 137
MwoI GCNNNNNNNGC 2 cut(s) 323, 413
NdeII GATC 3 cut(s) 337, 517, 676
NlaIII CATG 3 cut(s) 15, 160, 202
NlaIV GGNNCC 1 cut(s) 769
NruI TCGCGA 1 cut(s) 137
NspI RCATGY 1 cut(s) 160
PciI ACATGT 1 cut(s) 156
PfeI GAWTC 1 cut(s) 173
PpuMI RGGWCCY 1 cut(s) 768
PscI ACATGT 1 cut(s) 156
Psp124BI GAGCTC 1 cut(s) 334
Psp5II RGGWCCY 1 cut(s) 768
Psp6I CCWGG 1 cut(s) 556
PspGI CCWGG 1 cut(s) 556
PspN4I GGNNCC 1 cut(s) 769
PspPI GGNCC 2 cut(s) 482, 768
PspPPI RGGWCCY 1 cut(s) 768
PsuI RGATCY 2 cut(s) 337, 676
RruI TCGCGA 1 cut(s) 137
RsaI GTAC 4 cut(s) 102, 120, 203, 445
RsaNI GTAC 4 cut(s) 101, 119, 202, 444
SacI GAGCTC 1 cut(s) 334
SaqAI TTAA 2 cut(s) 455, 734
Sau3AI GATC 3 cut(s) 337, 517, 676
Sau96I GGNCC 2 cut(s) 482, 768
ScrFI CCNGG 1 cut(s) 558
SduI GDGCHC 1 cut(s) 334
SetI ASST 7 cut(s) 116, 232, 334, 418, 449, 517, 646
SfaNI GCATC 2 cut(s) 340, 564
SfcI CTRYAG 3 cut(s) 225, 390, 411
SinI GGWCC 2 cut(s) 482, 768
Sse9I AATT 4 cut(s) 303, 607, 637, 657
SstI GAGCTC 1 cut(s) 334
StyD4I CCNGG 1 cut(s) 556
TaaI ACNGT 2 cut(s) 61, 788
TaiI ACGT 2 cut(s) 116, 449
TaqI TCGA 1 cut(s) 63
TasI AATT 4 cut(s) 303, 607, 637, 657
TatI WGTACW 1 cut(s) 201
TfiI GAWTC 1 cut(s) 173
Tru1I TTAA 2 cut(s) 455, 734
Tru9I TTAA 2 cut(s) 455, 734
TscAI CASTG 1 cut(s) 298
TspDTI ATGAA 3 cut(s) 47, 264, 548
TspGWI ACGGA 1 cut(s) 170
TspRI CASTG 1 cut(s) 298
VpaK11BI GGWCC 2 cut(s) 482, 768
XceI RCATGY 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.