Prupe.7G247800_v2.0.a1

UDP-sugar transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0009640
Physical Location & Seq
Forward (+)
21041784 .. 21046678
4895 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G247800.5

Sequence Viewer

Length: 1011 bp
ATGGAAGCGGAAAGCAACCAGAAATTACCAGTCTCTAGCTCTTCGCAGAGCCAAGAGAGGCTTAAGAAAGGCCCCAAAATGACCAGGAAAGGAGCTTATGCTGCCATTTCCTACATGGCCTCCGCAGTTCTCTTGATAATGTTCAACAAAGCAGCCCTGTCTTCATACAATTTCCCATCTACAAATGTCATCACACTTTTCCAGATGCTATCATCATGTACATTGCTTTATGCAATGAAATGTTGGAAGATTATTTCTTTCACAACTGAACCACAGATCACTACAAACAATCCAGTAACTCTGATACCATTTAAGACGTTGGTTCACACTCTTCCTCTTGCAATATCCTATTTGCTTTATATGTTGGTTACAATGGCATCAGTGCGTGGTATAAATGTTCCCATGTACACCACCCTCAGACGGACTACAGTTGCTTTTACAATGATTGTTGAGTATATTTTGACAAGGCAGAAACATTCATATCCTGTTGTGGGCAGTGTCGGGATAATTATACTTGGCGCAGTTGTTGCCGGAGCTCGGGATTTGTCATTTGATGCCTATAGTTATGGTGTTGTTTTTGTTGCAAATATCTGTACAGCAATATATCTTGCTTCTATAGCTCATATTGGTAAGTCCAGTGGTCTTAGTACCTTTGGCCTAATGTGGTGCAACGGAATAATATGTGGACCAATCTTGCTGTTTTGGACCTCAATCAGTGGTGACCTAGGAAGGATGATAAACTTCCCGCATTTATTCTCCCATGGGTTTCAGGCTGTGATGCTTTTTTCCTGTGTTATGGCTTTTTCAATAAATTATTGCGTATTTTGGAATACAACACTCAATTCAGCTCTCACGCAGACAATTTGTGGTAATTTGAAGGATCTTTTTACAGTTGGACTTGGCTGGTTACTGTTTGGCGGGCTCCCGTTTGATTTGTTGAATGTTGCTGGCCAATCTCTTGGTTTTCTTGGGTCCTGTTTATACGCTTACTGTAAACTCCAAGGGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

337

Amino Acids

36.8

Weight (kDa)

9.27

Isoelectric Point (pI)

40.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 8, 123, 746, 918
AclWI GGATC 1 cut(s) 888
AcoI YGGCCR 1 cut(s) 949
AfaI GTAC 4 cut(s) 220, 407, 595, 649
AfiI CCNNNNNNNGG 3 cut(s) 420, 491, 537
AflII CTTAAG 1 cut(s) 62
AgsI TTSAA 4 cut(s) 145, 807, 877, 940
AjnI CCWGG 1 cut(s) 83
AluBI AGCT 5 cut(s) 39, 95, 536, 620, 848
AluI AGCT 5 cut(s) 39, 95, 536, 620, 848
Alw21I GWGCWC 1 cut(s) 538
Alw26I GTCTC 1 cut(s) 37
AlwI GGATC 1 cut(s) 888
Ama87I CYCGRG 1 cut(s) 537
AoxI GGCC 4 cut(s) 70, 117, 655, 949
ApeKI GCWGC 2 cut(s) 101, 152
AspA2I CCTAGG 1 cut(s) 724
AspLEI GCGC 1 cut(s) 521
AspS9I GGNCC 4 cut(s) 71, 686, 705, 972
AsuHPI GGTGA 1 cut(s) 731
AvaI CYCGRG 1 cut(s) 537
AvaII GGWCC 3 cut(s) 686, 705, 972
AvrII CCTAGG 1 cut(s) 724
BalI TGGCCA 1 cut(s) 951
BanII GRGCYC 2 cut(s) 538, 924
BbsI GAAGAC 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 538
BbvI GCAGC 2 cut(s) 88, 164
BccI CCATC 1 cut(s) 184
BciT130I CCWGG 1 cut(s) 85
BcoDI GTCTC 1 cut(s) 37
BfaI CTAG 2 cut(s) 36, 725
BfmI CTRYAG 3 cut(s) 426, 559, 615
BfrI CTTAAG 1 cut(s) 62
BisI GCNGC 2 cut(s) 102, 153
BlnI CCTAGG 1 cut(s) 724
BlsI GCNGC 2 cut(s) 103, 154
Bme1390I CCNGG 1 cut(s) 85
Bme18I GGWCC 3 cut(s) 686, 705, 972
BmeT110I CYCGRG 1 cut(s) 537
BmgT120I GGNCC 4 cut(s) 71, 686, 705, 972
BmiI GGNNCC 3 cut(s) 73, 923, 973
BmrFI CCNGG 1 cut(s) 85
BmsI GCATC 4 cut(s) 195, 386, 544, 768
BpiI GAAGAC 1 cut(s) 153
BsaJI CCNNGG 3 cut(s) 724, 760, 1000
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 3 cut(s) 420, 491, 537
Bse1I ACTGG 3 cut(s) 29, 293, 636
Bse3DI GCAATG 2 cut(s) 221, 240
BseBI CCWGG 1 cut(s) 85
BseDI CCNNGG 3 cut(s) 724, 760, 1000
BseGI GGATG 1 cut(s) 738
BseLI CCNNNNNNNGG 3 cut(s) 420, 491, 537
BseMI GCAATG 2 cut(s) 221, 240
BseMII CTCAG 1 cut(s) 430
BseNI ACTGG 3 cut(s) 29, 293, 636
BseXI GCAGC 2 cut(s) 88, 164
BshFI GGCC 4 cut(s) 72, 119, 657, 951
BsiHKAI GWGCWC 1 cut(s) 538
BsiHKCI CYCGRG 1 cut(s) 537
BsiSI CCGG 1 cut(s) 531
BslI CCNNNNNNNGG 3 cut(s) 420, 491, 537
BsmAI GTCTC 1 cut(s) 37
BsnI GGCC 4 cut(s) 72, 119, 657, 951
BsoBI CYCGRG 1 cut(s) 537
Bsp1286I GDGCHC 2 cut(s) 538, 924
Bsp1407I TGTACA 3 cut(s) 218, 405, 593
Bsp143I GATC 2 cut(s) 276, 880
Bsp19I CCATGG 1 cut(s) 760
BspACI CCGC 4 cut(s) 8, 123, 746, 918
BspANI GGCC 4 cut(s) 72, 119, 657, 951
BspCNI CTCAG 1 cut(s) 429
BspLI GGNNCC 3 cut(s) 73, 923, 973
BspPI GGATC 1 cut(s) 888
BspQI GCTCTTC 1 cut(s) 46
BspTI CTTAAG 1 cut(s) 62
BsrDI GCAATG 2 cut(s) 221, 240
BsrGI TGTACA 3 cut(s) 218, 405, 593
BsrI ACTGG 3 cut(s) 29, 293, 636
BssECI CCNNGG 3 cut(s) 724, 760, 1000
BssMI GATC 2 cut(s) 276, 880
BssT1I CCWWGG 3 cut(s) 724, 760, 1000
Bst2UI CCWGG 1 cut(s) 85
Bst4CI ACNGT 4 cut(s) 430, 892, 912, 992
Bst6I CTCTTC 2 cut(s) 46, 336
BstAFI CTTAAG 1 cut(s) 62
BstAPI GCANNNNNTGC 1 cut(s) 527
BstAUI TGTACA 3 cut(s) 218, 405, 593
BstC8I GCNNGC 2 cut(s) 920, 949
BstDEI CTNAG 2 cut(s) 416, 644
BstDSI CCRYGG 1 cut(s) 760
BstEII GGTNACC 1 cut(s) 719
BstF5I GGATG 1 cut(s) 738
BstHHI GCGC 1 cut(s) 521
BstKTI GATC 2 cut(s) 279, 883
BstMAI GTCTC 1 cut(s) 37
BstMBI GATC 2 cut(s) 276, 880
BstMWI GCNNNNNNNGC 3 cut(s) 101, 527, 617
BstNI CCWGG 1 cut(s) 85
BstPI GGTNACC 1 cut(s) 719
BstSCI CCNGG 1 cut(s) 83
BstSFI CTRYAG 3 cut(s) 426, 559, 615
BstV1I GCAGC 2 cut(s) 88, 164
BstV2I GAAGAC 1 cut(s) 153
BstX2I RGATCY 1 cut(s) 880
BstXI CCANNNNNNTGG 1 cut(s) 959
BstYI RGATCY 1 cut(s) 880
BsuRI GGCC 4 cut(s) 72, 119, 657, 951
BtgI CCRYGG 1 cut(s) 760
BtsCI GGATG 1 cut(s) 738
BtsI GCAGTG 1 cut(s) 502
BtsIMutI CAGTG 4 cut(s) 387, 502, 643, 721
Cac8I GCNNGC 2 cut(s) 920, 949
CfoI GCGC 1 cut(s) 521
Cfr13I GGNCC 4 cut(s) 71, 686, 705, 972
Csp6I GTAC 4 cut(s) 219, 406, 594, 648
CviAII CATG 4 cut(s) 115, 216, 403, 761
CviQI GTAC 4 cut(s) 219, 406, 594, 648
DdeI CTNAG 2 cut(s) 416, 644
DpnI GATC 2 cut(s) 278, 882
DpnII GATC 2 cut(s) 276, 880
EaeI YGGCCR 1 cut(s) 949
Eam1104I CTCTTC 2 cut(s) 46, 336
EarI CTCTTC 2 cut(s) 46, 336
Ecl136II GAGCTC 1 cut(s) 536
Eco130I CCWWGG 3 cut(s) 724, 760, 1000
Eco24I GRGCYC 2 cut(s) 538, 924
Eco47I GGWCC 3 cut(s) 686, 705, 972
Eco53kI GAGCTC 1 cut(s) 536
Eco88I CYCGRG 1 cut(s) 537
Eco91I GGTNACC 1 cut(s) 719
EcoICRI GAGCTC 1 cut(s) 536
EcoO109I RGGNCCY 2 cut(s) 71, 972
EcoO65I GGTNACC 1 cut(s) 719
EcoRII CCWGG 1 cut(s) 83
EcoT14I CCWWGG 3 cut(s) 724, 760, 1000
EcoT38I GRGCYC 2 cut(s) 538, 924
ErhI CCWWGG 3 cut(s) 724, 760, 1000
FaeI CATG 4 cut(s) 118, 219, 406, 764
FalI AAGNNNNNCTT 2 cut(s) 45, 77
FatI CATG 4 cut(s) 114, 215, 402, 760
FauI CCCGC 2 cut(s) 753, 911
Fnu4HI GCNGC 2 cut(s) 102, 153
FokI GGATG 1 cut(s) 745
FriOI GRGCYC 2 cut(s) 538, 924
Fsp4HI GCNGC 2 cut(s) 102, 153
FspBI CTAG 2 cut(s) 36, 725
GlaI GCGC 1 cut(s) 520
GluI GCNGC 2 cut(s) 102, 153
HaeIII GGCC 4 cut(s) 72, 119, 657, 951
HapII CCGG 1 cut(s) 531
HhaI GCGC 1 cut(s) 521
Hin1II CATG 4 cut(s) 118, 219, 406, 764
Hin6I GCGC 1 cut(s) 519
HinP1I GCGC 1 cut(s) 519
HpaII CCGG 1 cut(s) 531
HphI GGTGA 1 cut(s) 731
Hpy166II GTNNAC 4 cut(s) 325, 408, 686, 995
Hpy188I TCNGA 2 cut(s) 303, 419
Hpy188III TCNNGA 4 cut(s) 133, 202, 502, 539
Hpy8I GTNNAC 4 cut(s) 325, 408, 686, 995
HpyAV CCTTC 2 cut(s) 723, 871
HpyCH4III ACNGT 4 cut(s) 430, 892, 912, 992
HpyCH4IV ACGT 1 cut(s) 317
HpyCH4V TGCA 4 cut(s) 233, 341, 584, 669
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 527, 617
HpyF3I CTNAG 2 cut(s) 416, 644
HpySE526I ACGT 1 cut(s) 317
Hsp92II CATG 4 cut(s) 118, 219, 406, 764
HspAI GCGC 1 cut(s) 519
Kzo9I GATC 2 cut(s) 276, 880
LguI GCTCTTC 1 cut(s) 46
LmnI GCTCC 3 cut(s) 92, 533, 927
Lsp1109I GCAGC 2 cut(s) 88, 164
LweI GCATC 4 cut(s) 195, 386, 544, 768
MaeI CTAG 2 cut(s) 36, 725
MaeII ACGT 1 cut(s) 317
MaeIII GTNAC 4 cut(s) 295, 367, 719, 906
MalI GATC 2 cut(s) 278, 882
MboI GATC 2 cut(s) 276, 880
MboII GAAGA 4 cut(s) 33, 153, 259, 323
MflI RGATCY 1 cut(s) 880
MhlI GDGCHC 2 cut(s) 538, 924
MlsI TGGCCA 1 cut(s) 951
MluCI AATT 7 cut(s) 23, 169, 507, 811, 841, 861, 871
MluNI TGGCCA 1 cut(s) 951
MmeI TCCRAC 2 cut(s) 224, 874
MnlI CCTC 5 cut(s) 51, 130, 345, 425, 718
Mox20I TGGCCA 1 cut(s) 951
MscI TGGCCA 1 cut(s) 951
MseI TTAA 2 cut(s) 63, 312
Msp20I TGGCCA 1 cut(s) 951
MspCI CTTAAG 1 cut(s) 62
MspI CCGG 1 cut(s) 531
MspR9I CCNGG 1 cut(s) 85
MvaI CCWGG 1 cut(s) 85
MwoI GCNNNNNNNGC 3 cut(s) 101, 527, 617
NcoI CCATGG 1 cut(s) 760
NdeII GATC 2 cut(s) 276, 880
NlaIII CATG 4 cut(s) 118, 219, 406, 764
NlaIV GGNNCC 3 cut(s) 73, 923, 973
NmuCI GTSAC 1 cut(s) 719
PciSI GCTCTTC 1 cut(s) 46
PkrI GCNGC 2 cut(s) 103, 154
PpuMI RGGWCCY 1 cut(s) 972
Psp124BI GAGCTC 1 cut(s) 538
Psp5II RGGWCCY 1 cut(s) 972
Psp6I CCWGG 1 cut(s) 83
PspEI GGTNACC 1 cut(s) 719
PspGI CCWGG 1 cut(s) 83
PspN4I GGNNCC 3 cut(s) 73, 923, 973
PspPI GGNCC 4 cut(s) 71, 686, 705, 972
PspPPI RGGWCCY 1 cut(s) 972
PsuI RGATCY 1 cut(s) 880
RsaI GTAC 4 cut(s) 220, 407, 595, 649
RsaNI GTAC 4 cut(s) 219, 406, 594, 648
SacI GAGCTC 1 cut(s) 538
SapI GCTCTTC 1 cut(s) 46
SaqAI TTAA 2 cut(s) 63, 312
SatI GCNGC 2 cut(s) 102, 153
Sau3AI GATC 2 cut(s) 276, 880
Sau96I GGNCC 4 cut(s) 71, 686, 705, 972
ScrFI CCNGG 1 cut(s) 85
SduI GDGCHC 2 cut(s) 538, 924
SetI ASST 9 cut(s) 41, 97, 320, 538, 622, 653, 710, 726, 850
SfaNI GCATC 4 cut(s) 195, 386, 544, 768
SfcI CTRYAG 3 cut(s) 426, 559, 615
SinI GGWCC 3 cut(s) 686, 705, 972
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
Sse9I AATT 7 cut(s) 23, 169, 507, 811, 841, 861, 871
SsiI CCGC 4 cut(s) 8, 123, 746, 918
SspMI CTAG 2 cut(s) 36, 725
SstI GAGCTC 1 cut(s) 538
StyD4I CCNGG 1 cut(s) 83
StyI CCWWGG 3 cut(s) 724, 760, 1000
TaaI ACNGT 4 cut(s) 430, 892, 912, 992
TaiI ACGT 1 cut(s) 320
TasI AATT 7 cut(s) 23, 169, 507, 811, 841, 861, 871
TatI WGTACW 3 cut(s) 218, 405, 593
Tru1I TTAA 2 cut(s) 63, 312
Tru9I TTAA 2 cut(s) 63, 312
TscAI CASTG 4 cut(s) 387, 502, 643, 721
TseFI GTSAC 1 cut(s) 719
TseI GCWGC 2 cut(s) 101, 152
Tsp45I GTSAC 1 cut(s) 719
TspDTI ATGAA 3 cut(s) 153, 251, 468
TspGWI ACGGA 2 cut(s) 436, 687
TspRI CASTG 4 cut(s) 387, 502, 643, 721
Vha464I CTTAAG 1 cut(s) 62
VpaK11BI GGWCC 3 cut(s) 686, 705, 972
XcmI CCANNNNNNNNNTGG 1 cut(s) 112
XmaJI CCTAGG 1 cut(s) 724
XspI CTAG 2 cut(s) 36, 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.