Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0005513

Physical Location & Seq

Genomic Coordinates Reverse (-)

1700070 .. 1700568

Gene Structure 499 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g03011.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGCATTCGCAACAAACAATAGGGTTTCCATCATCACGCTGCTAGCACTACTCGTGCTAGCAGCATCATCAGCAGCTTTTGCTCGTAGTGTAAGTGATGATCACGCATCGTCTCCCATTCAGTCAGAAGGTTCTGCTAAGCCGGAGGATATAGTCGACATAGGTCTATGTGCCATCGAGTGTGCTGGTAAGTGCCTTCATAAGAGATCCAGTTTGGGTAAGGCGTTTTGTATGGCCAAATGCTTGGTCAAGTGCAGCATTAACCAGGCGAATGTGAAGCCAGAGCTCTATCATTGTGCTCTTGGATGTGCATATAAATCTTCTGCTGAAACAACATTTTCTGGTTCAGATGCTCATGTAGATAACAACTATTTGGGTTCTTGCTACAACAAGTGCGAGGAGAGCTTTCAAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

14.56

Weight (kDa)

6.39

Isoelectric Point (pI)

52.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005513)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g03011 FvH4_1g03012
rosa_laevigata	RLG00000015946 RLG00000015949 RLG00000026127 RLG00000026132 RLG00000026133
rosa_multiflora	Rmu_co8406007.1_g000001 Rmu_sc0004235.1_g000018
rosa_roxburghii	Rroxscaffold_2G00152720 Rroxscaffold_4G00277610 Rroxscaffold_4G00277620
rosa_rugosa	Rorug01G0438300 Rorug01G0483400
rosa_samantha	Rh1AG464000 Rh1AG464600 Rh1BG421200 Rh1BG421300 Rh1CG434700 Rh1CG435300 Rh1DG453800 Rh1DG453900 Rh2AG038200 Rh2BG037500 Rh2BG037700 Rh2CG038600 Rh2DG038200
rosa_wichuraiana	Rw1G040810 Rw1G040820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	156
AclWI	GGATC	1 cut(s)	201
AcoI	YGGCCR	1 cut(s)	234
AgsI	TTSAA	1 cut(s)	410
AjnI	CCWGG	1 cut(s)	264
AluBI	AGCT	3 cut(s)	77, 286, 405
AluI	AGCT	3 cut(s)	77, 286, 405
Alw21I	GWGCWC	2 cut(s)	288, 301
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	1 cut(s)	201
AoxI	GGCC	1 cut(s)	234
ApeKI	GCWGC	4 cut(s)	40, 62, 74, 255
ArsI	GACNNNNNNTTYG	2 cut(s)	231, 263
AsuNHI	GCTAGC	2 cut(s)	43, 58
BalI	TGGCCA	1 cut(s)	236
BanII	GRGCYC	1 cut(s)	288
BauI	CACGAG	1 cut(s)	53
Bbv12I	GWGCWC	2 cut(s)	288, 301
BbvI	GCAGC	4 cut(s)	27, 74, 86, 267
BccI	CCATC	2 cut(s)	38, 182
BciT130I	CCWGG	1 cut(s)	266
BclI	TGATCA	1 cut(s)	100
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	2 cut(s)	44, 59
BisI	GCNGC	4 cut(s)	41, 63, 75, 256
BlpI	GCTNAGC	1 cut(s)	138
BlsI	GCNGC	4 cut(s)	42, 64, 76, 257
Bme1390I	CCNGG	1 cut(s)	266
BmrFI	CCNGG	1 cut(s)	266
BmsI	GCATC	3 cut(s)	74, 116, 340
BmtI	GCTAGC	2 cut(s)	47, 62
BoxI	GACNNNNGTC	1 cut(s)	162
Bpu1102I	GCTNAGC	1 cut(s)	138
Bse1I	ACTGG	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	266
BseGI	GGATG	1 cut(s)	311
BseNI	ACTGG	1 cut(s)	210
BseRI	GAGGAG	1 cut(s)	413
BseXI	GCAGC	4 cut(s)	27, 74, 86, 267
BsgI	GTGCAG	1 cut(s)	274
BshFI	GGCC	1 cut(s)	236
BsiHKAI	GWGCWC	2 cut(s)	288, 301
BsiSI	CCGG	1 cut(s)	143
BsmAI	GTCTC	1 cut(s)	117
BsmBI	CGTCTC	1 cut(s)	117
BsmI	GAATGC	1 cut(s)	5
BsnI	GGCC	1 cut(s)	236
Bsp1286I	GDGCHC	2 cut(s)	288, 301
Bsp143I	GATC	2 cut(s)	100, 206
Bsp1720I	GCTNAGC	1 cut(s)	138
BspANI	GGCC	1 cut(s)	236
BspOI	GCTAGC	2 cut(s)	47, 62
BspPI	GGATC	1 cut(s)	201
BsrI	ACTGG	1 cut(s)	210
BssMI	GATC	2 cut(s)	100, 206
BssSI	CACGAG	1 cut(s)	53
Bst2BI	CACGAG	1 cut(s)	53
Bst2UI	CCWGG	1 cut(s)	266
BstAPI	GCANNNNNTGC	1 cut(s)	80
BstC8I	GCNNGC	2 cut(s)	45, 60
BstDEI	CTNAG	1 cut(s)	138
BstF5I	GGATG	1 cut(s)	311
BstKTI	GATC	2 cut(s)	103, 209
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	2 cut(s)	100, 206
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 80, 402
BstNI	CCWGG	1 cut(s)	266
BstPAI	GACNNNNGTC	1 cut(s)	162
BstSCI	CCNGG	1 cut(s)	264
BstV1I	GCAGC	4 cut(s)	27, 74, 86, 267
BstX2I	RGATCY	1 cut(s)	206
BstXI	CCANNNNNNTGG	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	206
BsuRI	GGCC	1 cut(s)	236
BtsCI	GGATG	1 cut(s)	311
Cac8I	GCNNGC	2 cut(s)	45, 60
CviAII	CATG	1 cut(s)	356
CviJI	RGCY	6 cut(s)	77, 142, 236, 280, 286, 405
CviKI_1	RGCY	6 cut(s)	77, 142, 236, 280, 286, 405
DdeI	CTNAG	1 cut(s)	138
DpnI	GATC	2 cut(s)	102, 208
DpnII	GATC	2 cut(s)	100, 206
EaeI	YGGCCR	1 cut(s)	234
Ecl136II	GAGCTC	1 cut(s)	286
Eco24I	GRGCYC	1 cut(s)	288
Eco53kI	GAGCTC	1 cut(s)	286
EcoICRI	GAGCTC	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	264
EcoT38I	GRGCYC	1 cut(s)	288
Esp3I	CGTCTC	1 cut(s)	117
FaeI	CATG	1 cut(s)	359
FaiI	YATR	8 cut(s)	152, 161, 169, 201, 233, 313, 315, 357
FatI	CATG	1 cut(s)	355
FbaI	TGATCA	1 cut(s)	100
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	4 cut(s)	41, 63, 75, 256
FokI	GGATG	1 cut(s)	318
FriOI	GRGCYC	1 cut(s)	288
Fsp4HI	GCNGC	4 cut(s)	41, 63, 75, 256
FspBI	CTAG	2 cut(s)	44, 59
GluI	GCNGC	4 cut(s)	41, 63, 75, 256
HaeIII	GGCC	1 cut(s)	236
HapII	CCGG	1 cut(s)	143
Hin1II	CATG	1 cut(s)	359
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HpaII	CCGG	1 cut(s)	143
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	2 cut(s)	127, 349
Hpy8I	GTNNAC	1 cut(s)	157
HpyAV	CCTTC	2 cut(s)	122, 206
HpyCH4V	TGCA	2 cut(s)	255, 311
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 80, 402
HpyF3I	CTNAG	1 cut(s)	138
Hsp92II	CATG	1 cut(s)	359
Ksp22I	TGATCA	1 cut(s)	100
Kzo9I	GATC	2 cut(s)	100, 206
LpnPI	CCDG	7 cut(s)	156, 171, 223, 251, 278, 294, 327
Lsp1109I	GCAGC	4 cut(s)	27, 74, 86, 267
LweI	GCATC	3 cut(s)	74, 116, 340
MaeI	CTAG	2 cut(s)	44, 59
MalI	GATC	2 cut(s)	102, 208
MboI	GATC	2 cut(s)	100, 206
MboII	GAAGA	1 cut(s)	312
MflI	RGATCY	1 cut(s)	206
MhlI	GDGCHC	2 cut(s)	288, 301
MlsI	TGGCCA	1 cut(s)	236
MluNI	TGGCCA	1 cut(s)	236
MnlI	CCTC	2 cut(s)	139, 391
Mox20I	TGGCCA	1 cut(s)	236
MscI	TGGCCA	1 cut(s)	236
MseI	TTAA	1 cut(s)	261
Msp20I	TGGCCA	1 cut(s)	236
MspI	CCGG	1 cut(s)	143
MspR9I	CCNGG	1 cut(s)	266
Mva1269I	GAATGC	1 cut(s)	5
MvaI	CCWGG	1 cut(s)	266
MwoI	GCNNNNNNNGC	3 cut(s)	71, 80, 402
NdeII	GATC	2 cut(s)	100, 206
NheI	GCTAGC	2 cut(s)	43, 58
NlaIII	CATG	1 cut(s)	359
PctI	GAATGC	1 cut(s)	5
PkrI	GCNGC	4 cut(s)	42, 64, 76, 257
PshAI	GACNNNNGTC	1 cut(s)	162
Psp124BI	GAGCTC	1 cut(s)	288
Psp6I	CCWGG	1 cut(s)	264
PspGI	CCWGG	1 cut(s)	264
PsuI	RGATCY	1 cut(s)	206
SacI	GAGCTC	1 cut(s)	288
SalI	GTCGAC	1 cut(s)	155
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	4 cut(s)	41, 63, 75, 256
Sau3AI	GATC	2 cut(s)	100, 206
ScrFI	CCNGG	1 cut(s)	266
SduI	GDGCHC	2 cut(s)	288, 301
SetI	ASST	6 cut(s)	79, 133, 166, 288, 407, 415
SfaNI	GCATC	3 cut(s)	74, 116, 340
SspMI	CTAG	2 cut(s)	44, 59
SstI	GAGCTC	1 cut(s)	288
StyD4I	CCNGG	1 cut(s)	264
TaqI	TCGA	2 cut(s)	156, 177
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TseI	GCWGC	4 cut(s)	40, 62, 74, 255
TspDTI	ATGAA	1 cut(s)	188
XmiI	GTMKAC	1 cut(s)	156
XspI	CTAG	2 cut(s)	44, 59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.