Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0005513

Physical Location & Seq

Genomic Coordinates Reverse (-)

1702846 .. 1703427

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g03012.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCATTCACAACATACAGTAGGGTTTCCATGATGATGCTACTAGCACTACTCGTGCTAGCAACAACAACTCTTGCTCGTAAGGAAGGTGATGACCATGAAACGCCTCCCATTCAATCTCTTCCATCGTCAGAAGGTTCGGGTTCTGATCAGCAGGAGGATGTTGTTGACATAGGTCTGTGTGCCATCCAATGTGCTGCTAGGTGCCTTGGTGGTAAGGCTAAGGCATCCATGATAGCATCACCTAATAAGTTTAGCTTTCGCAAAATCTGGGGAAAAATTAACTTCCATAAGGCGATTTGTGTTAGTAAGTGCATGGTCGAGTGCGCCATTGACAATGCGAATGTGAAGCCGGAGCTCTATCATTGTACTCTTGGATGTACTTATATGTCTGCTGCTAAAACAAAATTAACTAGTTCAGATGCAGATGCAGATGCTCATACAGCTGAGAACAACTGCTACAACAAGTGCTCGGAGAGCTATCAAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

164

Amino Acids

17.59

Weight (kDa)

6.4

Isoelectric Point (pI)

43.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005513)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g03011 FvH4_1g03012
rosa_laevigata	RLG00000015946 RLG00000015949 RLG00000026127 RLG00000026132 RLG00000026133
rosa_multiflora	Rmu_co8406007.1_g000001 Rmu_sc0004235.1_g000018
rosa_roxburghii	Rroxscaffold_2G00152720 Rroxscaffold_4G00277610 Rroxscaffold_4G00277620
rosa_rugosa	Rorug01G0438300 Rorug01G0483400
rosa_samantha	Rh1AG464000 Rh1AG464600 Rh1BG421200 Rh1BG421300 Rh1CG434700 Rh1CG435300 Rh1DG453800 Rh1DG453900 Rh2AG038200 Rh2BG037500 Rh2BG037700 Rh2CG038600 Rh2DG038200
rosa_wichuraiana	Rw1G040810 Rw1G040820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	204
AfaI	GTAC	2 cut(s)	370, 382
AgsI	TTSAA	1 cut(s)	116
AhlI	ACTAGT	1 cut(s)	413
AluBI	AGCT	4 cut(s)	258, 358, 446, 480
AluI	AGCT	4 cut(s)	258, 358, 446, 480
Alw21I	GWGCWC	2 cut(s)	360, 473
ApeKI	GCWGC	2 cut(s)	197, 395
AspLEI	GCGC	1 cut(s)	329
AsuHPI	GGTGA	2 cut(s)	101, 234
AsuNHI	GCTAGC	1 cut(s)	58
BanI	GGYRCC	1 cut(s)	204
BanII	GRGCYC	1 cut(s)	360
BauI	CACGAG	1 cut(s)	53
Bbv12I	GWGCWC	2 cut(s)	360, 473
BbvI	GCAGC	2 cut(s)	184, 382
BccI	CCATC	2 cut(s)	133, 194
BclI	TGATCA	1 cut(s)	148
BcuI	ACTAGT	1 cut(s)	413
BfaI	CTAG	4 cut(s)	44, 59, 201, 414
BisI	GCNGC	2 cut(s)	198, 396
BlsI	GCNGC	2 cut(s)	199, 397
BmiI	GGNNCC	1 cut(s)	206
BmsI	GCATC	6 cut(s)	27, 236, 248, 412, 418, 424
BmtI	GCTAGC	1 cut(s)	62
BoxI	GACNNNNGTC	1 cut(s)	174
Bpu10I	CCTNAGC	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	208
BseDI	CCNNGG	1 cut(s)	208
BseGI	GGATG	4 cut(s)	166, 186, 227, 383
BseMII	CTCAG	1 cut(s)	438
BseXI	GCAGC	2 cut(s)	184, 382
BshNI	GGYRCC	1 cut(s)	204
BsiHKAI	GWGCWC	2 cut(s)	360, 473
BsiSI	CCGG	1 cut(s)	353
BsmI	GAATGC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	360, 473
Bsp143I	GATC	1 cut(s)	148
BspCNI	CTCAG	1 cut(s)	439
BspLI	GGNNCC	1 cut(s)	206
BspOI	GCTAGC	1 cut(s)	62
BspT107I	GGYRCC	1 cut(s)	204
BssECI	CCNNGG	1 cut(s)	208
BssMI	GATC	1 cut(s)	148
BssSI	CACGAG	1 cut(s)	53
BssT1I	CCWWGG	1 cut(s)	208
Bst2BI	CACGAG	1 cut(s)	53
Bst4CI	ACNGT	1 cut(s)	20
Bst6I	CTCTTC	1 cut(s)	126
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	2 cut(s)	222, 447
BstF5I	GGATG	4 cut(s)	166, 186, 227, 383
BstHHI	GCGC	1 cut(s)	329
BstKTI	GATC	1 cut(s)	151
BstMBI	GATC	1 cut(s)	148
BstMWI	GCNNNNNNNGC	2 cut(s)	443, 477
BstPAI	GACNNNNGTC	1 cut(s)	174
BstV1I	GCAGC	2 cut(s)	184, 382
BtsCI	GGATG	4 cut(s)	166, 186, 227, 383
Cac8I	GCNNGC	1 cut(s)	60
CfoI	GCGC	1 cut(s)	329
Csp6I	GTAC	2 cut(s)	369, 381
CviAII	CATG	4 cut(s)	31, 98, 232, 316
CviJI	RGCY	6 cut(s)	221, 258, 352, 358, 446, 480
CviKI_1	RGCY	6 cut(s)	221, 258, 352, 358, 446, 480
CviQI	GTAC	2 cut(s)	369, 381
DdeI	CTNAG	2 cut(s)	222, 447
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	126
EarI	CTCTTC	1 cut(s)	126
Ecl136II	GAGCTC	1 cut(s)	358
Eco130I	CCWWGG	1 cut(s)	208
Eco24I	GRGCYC	1 cut(s)	360
Eco53kI	GAGCTC	1 cut(s)	358
EcoICRI	GAGCTC	1 cut(s)	358
EcoT14I	CCWWGG	1 cut(s)	208
EcoT38I	GRGCYC	1 cut(s)	360
ErhI	CCWWGG	1 cut(s)	208
FaeI	CATG	4 cut(s)	34, 101, 235, 319
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FatI	CATG	4 cut(s)	30, 97, 231, 315
FbaI	TGATCA	1 cut(s)	148
Fnu4HI	GCNGC	2 cut(s)	198, 396
FokI	GGATG	4 cut(s)	173, 173, 214, 390
FriOI	GRGCYC	1 cut(s)	360
Fsp4HI	GCNGC	2 cut(s)	198, 396
FspBI	CTAG	4 cut(s)	44, 59, 201, 414
GlaI	GCGC	1 cut(s)	328
GluI	GCNGC	2 cut(s)	198, 396
HapII	CCGG	1 cut(s)	353
HhaI	GCGC	1 cut(s)	329
Hin1II	CATG	4 cut(s)	34, 101, 235, 319
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HpaII	CCGG	1 cut(s)	353
HphI	GGTGA	2 cut(s)	101, 234
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	4 cut(s)	133, 148, 421, 475
Hpy8I	GTNNAC	1 cut(s)	169
HpyAV	CCTTC	2 cut(s)	80, 128
HpyCH4III	ACNGT	1 cut(s)	20
HpyCH4V	TGCA	3 cut(s)	315, 425, 431
HpyF10VI	GCNNNNNNNGC	2 cut(s)	443, 477
HpyF3I	CTNAG	2 cut(s)	222, 447
Hsp92II	CATG	4 cut(s)	34, 101, 235, 319
HspAI	GCGC	1 cut(s)	327
Ksp22I	TGATCA	1 cut(s)	148
Kzo9I	GATC	1 cut(s)	148
LmnI	GCTCC	1 cut(s)	355
LpnPI	CCDG	3 cut(s)	140, 256, 366
Lsp1109I	GCAGC	2 cut(s)	184, 382
LweI	GCATC	6 cut(s)	27, 236, 248, 412, 418, 424
MaeI	CTAG	4 cut(s)	44, 59, 201, 414
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MboII	GAAGA	1 cut(s)	113
MhlI	GDGCHC	2 cut(s)	360, 473
MluCI	AATT	2 cut(s)	279, 407
MnlI	CCTC	2 cut(s)	117, 151
MseI	TTAA	2 cut(s)	282, 410
MslI	CAYNNNNRTG	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	446
MspI	CCGG	1 cut(s)	353
Mva1269I	GAATGC	1 cut(s)	5
MwoI	GCNNNNNNNGC	2 cut(s)	443, 477
NdeII	GATC	1 cut(s)	148
NheI	GCTAGC	1 cut(s)	58
NlaIII	CATG	4 cut(s)	34, 101, 235, 319
NlaIV	GGNNCC	1 cut(s)	206
PctI	GAATGC	1 cut(s)	5
PkrI	GCNGC	2 cut(s)	199, 397
PshAI	GACNNNNGTC	1 cut(s)	174
Psp124BI	GAGCTC	1 cut(s)	360
PspN4I	GGNNCC	1 cut(s)	206
PsrI	GAACNNNNNNTAC	2 cut(s)	443, 475
PvuII	CAGCTG	1 cut(s)	446
RsaI	GTAC	2 cut(s)	370, 382
RsaNI	GTAC	2 cut(s)	369, 381
RseI	CAYNNNNRTG	1 cut(s)	35
SacI	GAGCTC	1 cut(s)	360
SaqAI	TTAA	2 cut(s)	282, 410
SatI	GCNGC	2 cut(s)	198, 396
Sau3AI	GATC	1 cut(s)	148
SduI	GDGCHC	2 cut(s)	360, 473
SfaNI	GCATC	6 cut(s)	27, 236, 248, 412, 418, 424
SmiMI	CAYNNNNRTG	1 cut(s)	35
SpeI	ACTAGT	1 cut(s)	413
Sse9I	AATT	2 cut(s)	279, 407
SspMI	CTAG	4 cut(s)	44, 59, 201, 414
SstI	GAGCTC	1 cut(s)	360
StyI	CCWWGG	1 cut(s)	208
TaaI	ACNGT	1 cut(s)	20
TaqI	TCGA	1 cut(s)	321
TasI	AATT	2 cut(s)	279, 407
TatI	WGTACW	2 cut(s)	368, 380
Tru1I	TTAA	2 cut(s)	282, 410
Tru9I	TTAA	2 cut(s)	282, 410
TseI	GCWGC	2 cut(s)	197, 395
TspDTI	ATGAA	1 cut(s)	114
XspI	CTAG	4 cut(s)	44, 59, 201, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.