Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005513

Physical Location & Seq

Genomic Coordinates Forward (+)

67979334 .. 67979935

Gene Structure 602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG464000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGCATTCGCAACAGACAGTAGGGTTTCCATTTTCGTGCTACTAATACTAGTGCTAGCAGCAGCAGCTTTTGCTCACAATGAAGGTGATGATCATGCAACGCCTCCGATTCGGTCTCCAAATCCATTATCGCCATCATCAGATGGTTCGGGTTCTGCTGAACCGGAGGGTTTAGTCGATGTAGGTCTATGTGCCATTCAATGTGGTGCTAAGTGTTTTGGTCGCAAGGCATCCCTGATTTCACCTGATAAGTTTCACTTTCCCAAAATTCATTTTCGTGGACCTGTTTGTTTTGGTACATGCATGCTAGAGTGCACCATGAATCAGGGGAATGTGAAGCCAGAGCTCTATCATTGTACACTTGGATGTGCTTATAAGTTTGCTGCTAAAACAAAATCAACTGGTTCAGAGGGAATAACTATTTGGGTTCTTGCTACAACAAGTGCGAGAAGAACTATCAAGGTTGACAACTTTGGAGATCGAGTAGTCGTTTCAAACAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

17.78

Weight (kDa)

8.13

Isoelectric Point (pI)

36.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005513)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g03011 FvH4_1g03012
rosa_laevigata	RLG00000015946 RLG00000015949 RLG00000026127 RLG00000026132 RLG00000026133
rosa_multiflora	Rmu_co8406007.1_g000001 Rmu_sc0004235.1_g000018
rosa_roxburghii	Rroxscaffold_2G00152720 Rroxscaffold_4G00277610 Rroxscaffold_4G00277620
rosa_rugosa	Rorug01G0438300 Rorug01G0483400
rosa_samantha	Rh1AG464000 Rh1AG464600 Rh1BG421200 Rh1BG421300 Rh1CG434700 Rh1CG435300 Rh1DG453800 Rh1DG453900 Rh2AG038200 Rh2BG037500 Rh2BG037700 Rh2CG038600 Rh2DG038200
rosa_wichuraiana	Rw1G040810 Rw1G040820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	375
AcsI	RAATTY	1 cut(s)	267
AfaI	GTAC	2 cut(s)	298, 358
AgsI	TTSAA	2 cut(s)	200, 495
AhlI	ACTAGT	1 cut(s)	49
AjuI	GAANNNNNNNTTGG	2 cut(s)	406, 438
AluBI	AGCT	2 cut(s)	68, 346
AluI	AGCT	2 cut(s)	68, 346
Alw21I	GWGCWC	2 cut(s)	317, 348
Alw26I	GTCTC	1 cut(s)	120
Alw44I	GTGCAC	1 cut(s)	313
ApaLI	GTGCAC	1 cut(s)	313
ApeKI	GCWGC	4 cut(s)	59, 62, 65, 383
ApoI	RAATTY	1 cut(s)	267
AspS9I	GGNCC	1 cut(s)	281
AsuHPI	GGTGA	2 cut(s)	98, 234
AsuNHI	GCTAGC	1 cut(s)	55
AvaII	GGWCC	1 cut(s)	281
BaeGI	GKGCMC	1 cut(s)	317
BanII	GRGCYC	1 cut(s)	348
Bbv12I	GWGCWC	2 cut(s)	317, 348
BbvI	GCAGC	4 cut(s)	71, 74, 77, 370
BccI	CCATC	2 cut(s)	137, 142
BclI	TGATCA	1 cut(s)	91
BcoDI	GTCTC	1 cut(s)	120
BcuI	ACTAGT	1 cut(s)	49
BfaI	CTAG	3 cut(s)	50, 56, 308
BisI	GCNGC	4 cut(s)	60, 63, 66, 384
BlsI	GCNGC	4 cut(s)	61, 64, 67, 385
Bme18I	GGWCC	1 cut(s)	281
BmgT120I	GGNCC	1 cut(s)	281
BmsI	GCATC	1 cut(s)	239
BmtI	GCTAGC	1 cut(s)	59
BsaI	GGTCTC	1 cut(s)	120
BsaWI	WCCGGW	1 cut(s)	163
BsaXI	ACNNNNNCTCC	2 cut(s)	468, 498
Bse1I	ACTGG	1 cut(s)	406
BseGI	GGATG	2 cut(s)	230, 371
BseNI	ACTGG	1 cut(s)	406
BseSI	GKGCMC	1 cut(s)	317
BseXI	GCAGC	4 cut(s)	71, 74, 77, 370
BsiHKAI	GWGCWC	2 cut(s)	317, 348
BsiSI	CCGG	1 cut(s)	164
BsmAI	GTCTC	1 cut(s)	120
BsmI	GAATGC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	120
Bsp1286I	GDGCHC	2 cut(s)	317, 348
Bsp1407I	TGTACA	1 cut(s)	356
Bsp143I	GATC	2 cut(s)	91, 478
BspOI	GCTAGC	1 cut(s)	59
BspTNI	GGTCTC	1 cut(s)	120
BsrGI	TGTACA	1 cut(s)	356
BsrI	ACTGG	1 cut(s)	406
BssMI	GATC	2 cut(s)	91, 478
Bst4CI	ACNGT	1 cut(s)	20
BstAPI	GCANNNNNTGC	1 cut(s)	71
BstAUI	TGTACA	1 cut(s)	356
BstC8I	GCNNGC	2 cut(s)	57, 305
BstDEI	CTNAG	1 cut(s)	210
BstF5I	GGATG	2 cut(s)	230, 371
BstKTI	GATC	2 cut(s)	94, 481
BstMAI	GTCTC	1 cut(s)	120
BstMBI	GATC	2 cut(s)	91, 478
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 71
BstNSI	RCATGY	2 cut(s)	303, 307
BstSLI	GKGCMC	1 cut(s)	317
BstV1I	GCAGC	4 cut(s)	71, 74, 77, 370
BtsCI	GGATG	2 cut(s)	230, 371
Cac8I	GCNNGC	2 cut(s)	57, 305
Cfr13I	GGNCC	1 cut(s)	281
Csp6I	GTAC	2 cut(s)	297, 357
CviAII	CATG	4 cut(s)	95, 300, 304, 319
CviJI	RGCY	3 cut(s)	68, 340, 346
CviKI_1	RGCY	3 cut(s)	68, 340, 346
CviQI	GTAC	2 cut(s)	297, 357
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	2 cut(s)	93, 480
DpnII	GATC	2 cut(s)	91, 478
Ecl136II	GAGCTC	1 cut(s)	346
Eco24I	GRGCYC	1 cut(s)	348
Eco31I	GGTCTC	1 cut(s)	120
Eco47I	GGWCC	1 cut(s)	281
Eco53kI	GAGCTC	1 cut(s)	346
EcoICRI	GAGCTC	1 cut(s)	346
EcoT22I	ATGCAT	1 cut(s)	305
EcoT38I	GRGCYC	1 cut(s)	348
FaeI	CATG	4 cut(s)	98, 303, 307, 322
FaiI	YATR	6 cut(s)	96, 190, 301, 305, 320, 375
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FatI	CATG	4 cut(s)	94, 299, 303, 318
FbaI	TGATCA	1 cut(s)	91
Fnu4HI	GCNGC	4 cut(s)	60, 63, 66, 384
FokI	GGATG	2 cut(s)	217, 378
FriOI	GRGCYC	1 cut(s)	348
Fsp4HI	GCNGC	4 cut(s)	60, 63, 66, 384
FspBI	CTAG	3 cut(s)	50, 56, 308
GluI	GCNGC	4 cut(s)	60, 63, 66, 384
HapII	CCGG	1 cut(s)	164
Hin1II	CATG	4 cut(s)	98, 303, 307, 322
HincII	GTYRAC	1 cut(s)	466
HindII	GTYRAC	1 cut(s)	466
HinfI	GANTC	2 cut(s)	109, 322
HpaII	CCGG	1 cut(s)	164
HphI	GGTGA	2 cut(s)	98, 234
Hpy166II	GTNNAC	4 cut(s)	281, 315, 359, 466
Hpy188I	TCNGA	3 cut(s)	108, 142, 409
Hpy8I	GTNNAC	4 cut(s)	281, 315, 359, 466
HpyAV	CCTTC	1 cut(s)	77
HpyCH4III	ACNGT	1 cut(s)	20
HpyCH4V	TGCA	3 cut(s)	98, 303, 315
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 71
HpyF3I	CTNAG	1 cut(s)	210
Hsp92II	CATG	4 cut(s)	98, 303, 307, 322
Ksp22I	TGATCA	1 cut(s)	91
Kzo9I	GATC	2 cut(s)	91, 478
LpnPI	CCDG	7 cut(s)	177, 248, 258, 297, 311, 354, 387
Lsp1109I	GCAGC	4 cut(s)	71, 74, 77, 370
LweI	GCATC	1 cut(s)	239
MaeI	CTAG	3 cut(s)	50, 56, 308
MalI	GATC	2 cut(s)	93, 480
MboI	GATC	2 cut(s)	91, 478
MboII	GAAGA	1 cut(s)	462
MhlI	GDGCHC	2 cut(s)	317, 348
MluCI	AATT	2 cut(s)	267, 499
MnlI	CCTC	3 cut(s)	114, 160, 403
Mph1103I	ATGCAT	1 cut(s)	305
MseI	TTAA	1 cut(s)	502
MslI	CAYNNNNRTG	3 cut(s)	35, 276, 364
MspI	CCGG	1 cut(s)	164
Mva1269I	GAATGC	1 cut(s)	5
MwoI	GCNNNNNNNGC	2 cut(s)	65, 71
NdeII	GATC	2 cut(s)	91, 478
NheI	GCTAGC	1 cut(s)	55
NlaIII	CATG	4 cut(s)	98, 303, 307, 322
NsiI	ATGCAT	1 cut(s)	305
NspI	RCATGY	2 cut(s)	303, 307
PaeI	GCATGC	1 cut(s)	307
PctI	GAATGC	1 cut(s)	5
PfeI	GAWTC	2 cut(s)	109, 322
PkrI	GCNGC	4 cut(s)	61, 64, 67, 385
PsiI	TTATAA	1 cut(s)	375
Psp124BI	GAGCTC	1 cut(s)	348
PspPI	GGNCC	1 cut(s)	281
RsaI	GTAC	2 cut(s)	298, 358
RsaNI	GTAC	2 cut(s)	297, 357
RseI	CAYNNNNRTG	3 cut(s)	35, 276, 364
SacI	GAGCTC	1 cut(s)	348
SaqAI	TTAA	1 cut(s)	502
SatI	GCNGC	4 cut(s)	60, 63, 66, 384
Sau3AI	GATC	2 cut(s)	91, 478
Sau96I	GGNCC	1 cut(s)	281
SduI	GDGCHC	2 cut(s)	317, 348
SetI	ASST	7 cut(s)	70, 88, 187, 247, 286, 348, 465
SfaNI	GCATC	1 cut(s)	239
SinI	GGWCC	1 cut(s)	281
SmiMI	CAYNNNNRTG	3 cut(s)	35, 276, 364
SpeI	ACTAGT	1 cut(s)	49
SphI	GCATGC	1 cut(s)	307
Sse9I	AATT	2 cut(s)	267, 499
SspMI	CTAG	3 cut(s)	50, 56, 308
SstI	GAGCTC	1 cut(s)	348
TaaI	ACNGT	1 cut(s)	20
TaqI	TCGA	2 cut(s)	177, 481
TaqII	GACCGA	1 cut(s)	102
TasI	AATT	2 cut(s)	267, 499
TatI	WGTACW	1 cut(s)	356
TfiI	GAWTC	2 cut(s)	109, 322
Tru1I	TTAA	1 cut(s)	502
Tru9I	TTAA	1 cut(s)	502
TseI	GCWGC	4 cut(s)	59, 62, 65, 383
TspDTI	ATGAA	3 cut(s)	96, 260, 335
VneI	GTGCAC	1 cut(s)	313
VpaK11BI	GGWCC	1 cut(s)	281
XapI	RAATTY	1 cut(s)	267
XceI	RCATGY	2 cut(s)	303, 307
XspI	CTAG	3 cut(s)	50, 56, 308
Zsp2I	ATGCAT	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.